miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_shortStem_nonpairedHIGH (370 loci)

block2128666 [novel_lenNOK_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.047	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	3	11	3arm	137	nd	0.37	2	2	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------AGGCUGU--------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	------------------------------------------------------------------AAGGCTGTGGGCAAGGTCA---	19	1	1
rat	ggaaagctgtggcatgatggccatggggcagcccagaacatcattcctacatccactggtgctgccAAGGCTGTGGGCAAGGTCAtcc
	****************************************************************************************
rat	(((..(((...((...((((((....((((((((((...................)))).))))))..))))))..))..)))..)))	0.730 -31.91

rat

chromosome:7:75589877:75589964:-1

intergenic

block2398237 [novel_lenNOK_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.229	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	3	11	3arm	137	nd	0.37	2	2	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------AGGCUGU--------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	------------------------------------------------------------------AAGGCTGTGGGCAAGGTCA---	19	1	1
rat	ggaaagctgtggcgtgatggccgtggggcagcccagaacatcatccctgcatccactggtgctgccAAGGCTGTGGGCAAGGTCAtcc
	****************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000046446 ENSRNOG00000033711 Q8K4T8_RAT
rat	(((..(((...((...((((((....((((((((((...................)))).))))))..))))))..))..)))..)))	0.810 -31.91

rat

chromosome:8:44322293:44322380:1

block1393214 [novel_lenNOK_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.393	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	1	11	3arm	137	nd	0.32	3	2	2	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------AGGCUGU------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	----------------------------------------------------------AAGGCTGTGGGCAAGGTCA-	19	1	1
rat	gtggcgtgatggctgtggggcagcccagaacatcatccctgcatccactggtgctgccAAGGCTGTGGGCAAGGTCAt
	******************************************************************************
rat	(((((.((((((((....((((((((((...................)))).))))))..))))))...))..)))))	0.450 -26.21

rat

chromosome:3:97329538:97329615:-1

intergenic

novel_lenNOK_Multihit_shortStem (355 loci)

block751 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.083	no	no	0.56/0.56	18/18/0.00	0.0	0.0	2	0	1	0	2	22	5arm	20	nd	0.28	3	2	1	na	na

		reads	miRBase family seed
seed	---GGAGCAC------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T3S1
	--GGGAGCACATCATGGTCT--------------------------------------------------------------------------	18	2
rat	ttGGGAGCACATCATGGTCTgttatgatcttagaaaagcaaggatgcttgaggagtttaagtcatggaaggccttctttaagtctgctttggat
	**********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000061709 ENSRNOG00000040121 RGD1565158_predicted
rat	((.((((((.((...(((((.((((((.((((((....((((....)))).....)))))))))))).)))))........)).)))))).)).	0.900 -24.70

rat

chromosome:10:1381588:1381681:-1

block85339 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.58/0.58	19/19/0.00	0.5	0.5	2	0	2	0	0	12	5arm	105	nd	0.21	2	2	2	na	na

		reads	miRBase family seed
seed	--ACCUCAU---------------------------------------------------------------	1	novel
seed	-GACCUCA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1	T4S2
	-GACCTCATGGCCTACATGG----------------------------------------------------	19	-	1
	GGACCTCATGGCCTACATG-----------------------------------------------------	19	1	-
rat	GGACCTCATGGCCTACATGGcctccaaggagtaagaaaccctggatcacccaccctagcccaggaaggatct
	************************************************************************
	----------------------------------------------------------------------------------	ENSRNOT00000049846 ENSRNOG00000007019 Accn1
rat	(((((((.(((.(((..(((..(((.(((.((.....))))))))....)))...))).))).)).)).)))	0.570 -17.70

rat

chromosome:10:70056853:70056924:1

Opposite_strand|Intronic_coding|ENSRNOT00000049846|ENSRNOG00000007019 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000009348|ENSRNOG00000007019 ## ENSRNOG00000007019|protein_coding|Accn1|Amiloride-sensitive cation channel 1, neuronal (Amiloride-sensitive brain sodium channel) (Amiloride-sensitive brain sodium channel 2) (Amiloride-sensitive cation channel neuronal 1) (Acid-sensing ion channel 2) (Brain sodium channel 1) (BNaC1) (BNC1) (Ma [Source:UniProtKB/Swiss-Prot;Acc:Q62962]

block148024 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.380	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	1	27	5arm	18	nd	0.00	0	1	1	na	na

		reads	miRBase family seed
seed	--CUUAGAC------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	-CCTTAGACATGGTTGCTTG-------------------------------------------------------------------------------------------	19	1
rat	cCCTTAGACATGGTTGCTTGtgtgtaggcccggctgtgctgatgatgagaccacacagagacccccgagagctggctccgcgttcaatgagctaatcatgtctttttaagg
	***************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000013159 ENSRNOG00000009920 LOC307023
rat	.((((((((((((((((((((.((..((.((((((((.(((.((.((....)))))))..)).......)))))).))..))....)))))).))))))))))....))))	0.870 -33.01

rat

chromosome:11:17719651:17719761:1

block156125 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.339	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	1	0	3arm	21	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------UACCUGA------------	1	novel
		len	cloning frequencies
			T2S2
	--------------------------------GTACCTGAAGGTCAAAGGG-	19	1
rat	tctaagattgaccgccatatgtatcacatcctGTACCTGAAGGTCAAAGGGa
	****************************************************
rat	(((....((((((..((...((((........)))).))..))))))..)))	0.990 -8.90

rat

chromosome:11:38432158:38432209:1

intergenic

block160578 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.615	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	3	4	3arm	136	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------UCAAGAU--------------	1	novel
		len	cloning frequencies
			T4S1
	-----------------------------------------------------CTCAAGATTGTCAGCAATG---	19	1
rat	tgccccttctgctgatgcccctatgtttgaaccatgagaaatatgacaactcaCTCAAGATTGTCAGCAATGcat
	***************************************************************************
rat	(((......(((((((.........(((((....((((...........)))).)))))...)))))))..))).	0.420 -10.50

rat

chromosome:11:50959539:50959613:1

intergenic

block178857 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.144	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	4	29	3arm	15	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------------AUUUCCC---------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------------------------------------------------------------------------------CATTTCCCACAGCAGTACT----	19	1
rat	ggattatctgtttatgtttctctgcttggggactggagtgtggagggttttctagcaaaataaagcaagcagaatttacttatgaagcctgcaggctCATTTCCCACAGCAGTACTatcc
	************************************************************************************************************************
rat	((((...........((....(((((((((((...((((.((.(((.((((((.((............)))))..........))).))).)).))))..)))))).))))).)).))))	0.520 -32.00

rat

chromosome:12:4788089:4788208:-1

intergenic

block184841 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.454	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	1	6	3arm	88	nd	0.21	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------UAAGUCU------------	1	novel
		len	cloning frequencies
			T5S1
	------------------------------------------CTAAGTCTGTGGCTCGCAT-	19	1
rat	atgacgagatccgccaccactggggaggcaacgtcctgggtcCTAAGTCTGTGGCTCGCATt
	**************************************************************
	------------------------------------------------------------------------	ENSRNOT00000051565 ENSRNOG00000001241 Iqce_predicted
	------------------------------------------------------------------------	ENSRNOT00000001667 ENSRNOG00000001241 Iqce_predicted
rat	(((.(((.....(((((.(((.((((..((......))..)))).)))..))))))))))).	0.980 -17.20