miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_shortStem (355 loci)

block1911273 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.113	no	no	0.58/0.58	19/19/0.00	0.0	0.0	3	0	1	0	1	24	5arm	84	nd	0.16	2	3	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------GCAGUGU-----------------------------------	1	novel
seed	--GCAGUGU---------------------------------------------------------------------------------------------	1	novel
seed	-------------------------------GCAGUGU----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	-----------------------------------------------------------AGCAGTGTACCCTCTCCAG------------------------	19	1
	------------------------------AGCAGTGTACCCTCTCCAG-----------------------------------------------------	19	1
	-AGCAGTGTACCCTCTCCAG----------------------------------------------------------------------------------	19	1
rat	gAGCAGTGTACCCTCTCCAGgcttggggtgAGCAGTGTACCCTCTCCAGgcttggggcgAGCAGTGTACCCTCTCCAGgcttggggcgagcagtataccctc
	******************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000061746 ENSRNOG00000040136 1700011E24Rik
rat	(((..((((((.((((((((((((((((...(((.(((..((((.........))))...))).))).....)))))))))))))..)))..)))))).)))	0.990 -39.90

rat

chromosome:6:10913358:10913459:-1

Same_strand|Intronic_coding|ENSRNOT00000061746|ENSRNOG00000040136 ## ENSRNOG00000040136|protein_coding|1700011E24Rik|RIKEN cDNA 1700011E24 gene Gene [Source:MGI Symbol;Acc:MGI:1922717] ## {Repeats: trf 1649 1668 0 class=trf}

block1911274 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.141	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	1	0	1	8	5arm	84	nd	0.16	1	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------GCAGUGU-------------------------------------	1	novel
seed	--GCAGUGU------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	------------------------------AGCAGTGTACCCTCTCCAG--------------------------	19	1
	-AGCAGTGTACCCTCTCCAG-------------------------------------------------------	19	1
rat	gAGCAGTGTACCCTCTCCAGgcttggggtgAGCAGTGTACCCTCTCCAGgcttggggcgagcagtgtaccctctc
	***************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000061746 ENSRNOG00000040136 1700011E24Rik
rat	(((.((.((((.((((((((((((((((...............)))))))))))))).....)).)))).)))))	1.000 -28.86

rat

chromosome:6:10913385:10913459:-1

block1911275 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.519	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	4	8	5arm	84	nd	0.16	2	1	1	na	na

		reads	miRBase family seed
seed	-----GCAGUGU--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	----AGCAGTGTACCCTCTCCAG---------------------------------------------------------	19	1
rat	ggtgAGCAGTGTACCCTCTCCAGgcttggggcgagcagtgtaccctctacaggcttggggcgagcagtgtaccctctcca
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000061746 ENSRNOG00000040136 1700011E24Rik
rat	((.(((..((((((.((((((((((((((((...........)))....))))))))))..)))..)))))).))).)).	1.000 -27.00

rat

chromosome:6:10913499:10913578:-1

block1911276 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.517	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	1	0	3	23	5arm	84	nd	0.11	1	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------GCAGUGU---------------------------------------------	1	novel
seed	----GCAGUGU-------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	---AGCAGTGTACCCTCTCCAG--------------------------------------------------------------------------------------------	19	1
	-------------------------------------------------------------AGCAGTGTACCCTCTCCAG----------------------------------	19	1
rat	gcgAGCAGTGTACCCTCTCCAGgcttggggcgagcagtataccctctacagacttagggtgAGCAGTGTACCCTCTCCAGgcttggggcgagcagtgtaccctctacaggcttg
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000061746 ENSRNOG00000040136 1700011E24Rik
rat	.(((((((.((((.((((((((((((((((...(((((.((((((..........)))))).))..))).....)))))))))))))).....)).)))).))......)))))	0.490 -38.20

rat

chromosome:6:10913522:10913635:-1

block255796 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.011	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	4	34	3arm	137	nd	0.26	3	2	2	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------AGGCUGU---------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	----------------------------------------------------------------------------------------AAGGCTGTGGGCAAGGTCA----	19	1	1
rat	gaagactatgaatggcccctttggaaagctgtggtgggatggccatggagcatcccaaaacgtcatccctgcatccactgctgctaccAAGGCTGTGGGCAAGGTCAttcc
	***************************************************************************************************************
rat	(((((((.((.((((((...((((..(((.((((.((((((((..(((......)))....)))))))).....)))).)))....))))))))))...)).)))).))).	0.910 -42.30

rat

chromosome:13:41885800:41885910:-1

intergenic

block1281756 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.058	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	0	12	5arm	137	nd	0.21	2	2	2	na	na

		reads	miRBase family seed
seed	-AGGCUGU----------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	AAGGCTGTGGGCAAGGTCA-----------------------------------------------	19	1	1
rat	AAGGCTGTGGGCAAGGTCAtcccagagctgaagaagaaactcactggcatggccttccatgttcct
	******************************************************************
rat	.(((..(((((..(((((((.((((...(((.........))))))).))))))))))))...)))	1.000 -20.60

rat

chromosome:2:112022819:112022884:1

intergenic

block2652249 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.092	no	no	0.44/0.47	18/19/0.00	1.0	1.5	2	0	2	0	0	19	3arm	18	nd	0.28	3	2	2	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------UUCUUAA-----------	1	novel
seed	----------------------------------------------------------------CCUUCUU-------------	1	novel
		len	cloning frequencies
			T1S2	T3S2
	---------------------------------------------------------------GCCTTCTTAAATGGTCCT---	18	1	-
	-----------------------------------------------------------------CTTCTTAAATGGTCCTGGC	19	-	1
rat	gccaatcagaagggaaggcgggcttttccgggtgccttggtgtagtattcgcgtagtagctaaGCCTTCTTAAATGGTCCTGGC
	************************************************************************************
rat	((((((((...((((((((.((((....(((((((.........)))))))......))))..))))))))...))))..))))	0.920 -27.90

rat

chromosome:9:113030413:113030496:1

intergenic

block2652839 [novel_lenNOK_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.044	no	no	0.44/0.47	18/19/0.00	1.0	1.5	2	0	2	0	1	19	3arm	18	nd	0.28	3	2	2	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------CCUUCUU--------------	1	novel
seed	------------------------------------------------------------------UUCUUAA------------	1	novel
		len	cloning frequencies
			T1S2	T3S2
	---------------------------------------------------------------GCCTTCTTAAATGGTCCT----	18	1	-
	-----------------------------------------------------------------CTTCTTAAATGGTCCTGGC-	19	-	1
rat	gccaatcagaagagaaggcgggcttttccgggtgccttggtgtagtattcgcgcagtagctaaGCCTTCTTAAATGGTCCTGGCt
	*************************************************************************************
rat	((((((((...((((((((.((((....(((((((.........)))))))......))))..))))))))...))))..)))).	0.880 -29.90

rat

chromosome:9:113397742:113397826:1

intergenic

novel_lenNOK_shortStem_randfoldOK_bulgeHIGH (350 loci)

block1062 [novel_lenNOK_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	4	16	3arm	2	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------GGGACAC--------------	1	novel
		len	cloning frequencies
			T3S2
	----------------------------------------------------------------------TGGGACACACCTGTTTAC----	18	1
rat	ggaggtggtattgttttttagtgttcatcatttcctttattgtgctttttctttgtaaataaaggtttatTGGGACACACCTGTTTACctct
	********************************************************************************************
rat	((((((((....((......((((((.......((((((((.(((.........))))))))))).......))))))))....))))))))	0.850 -23.04

rat

chromosome:10:1984481:1984572:-1

intergenic

block1448 [novel_lenNOK_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	0	8	3arm	1	nd	0.24	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------AGCCAUG----------	1	novel
		len	cloning frequencies
			T1S2
	-------------------------------------------AAGCCATGCATGTGCAAG	18	1
rat	cttgtacatatgggtcttagatttaactcccagttgggagtaaAAGCCATGCATGTGCAAG
	*************************************************************
rat	(((((((((...(((......(((.((((((....)))))).))))))....)))))))))	0.910 -21.70