miR-Intess: classification

other hairpins

block1812577 [novel_lenNOK_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.534	no	no	0.44/0.67	18/20/0.22	2.8 0.0	3.5 0.0	8 1	0 0	5 1	0 0	6 3	5 16	3arm 3arm	1 1	nd nd	0.05 0.22	1 3	9	5	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GUGGAGC---------------------	2	novel
seed	-------------------------------------------------------------CGGUGGA-----------------------	2	novel
seed	-----------------------------------------------------------------GGAGCGU-------------------	1	novel
seed	-----------------------------------------------------------------------UAAGCAU-------------	1	novel
seed	-------------------------------------------------------------------AGCGUAA-----------------	1	novel
seed	------------------------------------------------------------GCGGUGG------------------------	1	novel
seed	--------------------------------------------------------------GGUGGAG----------------------	1	novel
		len	cloning frequencies
			T1S2	T2S1	T2S2	T3S1	T3S2
	-----------------------------------------------------------CGCGGTGGAGCGTAAGCA--------------	18	-	-	-	-	1
	----------------------------------------------------------------------GTAAGCATGTTGAGCTAC---	18	-	-	-	-	1
	--------------------------------------------------------------GGTGGAGCGTAAGCATGT-----------	18	-	-	-	1	-
	--------------------------------------------------------------GGTGGAGCGTAAGCATGTTG---------	20	-	-	-	1	-
	----------------------------------------------------------------TGGAGCGTAAGCATGTTG---------	18	-	-	-	1	-
	-------------------------------------------------------------CGGTGGAGCGTAAGCATGTT----------	20	-	1	-	-	-
	------------------------------------------------------------GCGGTGGAGCGTAAGCAT-------------	18	-	-	-	1	-
	------------------------------------------------------------------GAGCGTAAGCATGTTGAGC------	19	1	-	-	-	-
	------------------------------------------------------------GCGGTGGAGCGTAAGCATG------------	19	-	-	1	-	-
rat	gcggagcctacatgagcaccttaggcttgcacacgctgggccacttcctttccgggcagCGCGGTGGAGCGTAAGCATGTTGAGCTACgtg
	*******************************************************************************************
rat	(((.(((..(((((.....((((.((((.(((.(((...(((............)))...)))))))))).)))))))))...))).))).	0.950 -30.60

rat

chromosome:5:8840422:8840512:1

intergenic

block1848954 [novel_lenNOK_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.079	no	no	0.53/0.63	19/19/0.00	2.0	2.0	3	0	3	0	20	8	5arm	1	nd	0.26	3	3	3	na	na

		reads	miRBase family seed
seed	-----------------------CAGAGAC-------------------------------------------------------------------------------	1	novel
seed	-------------------------GAGACAG-----------------------------------------------------------------------------	1	novel
seed	---------------------UCCAGAG---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1	T3S2	T4S2
	------------------------AGAGACAGAGTGAGCGCGC------------------------------------------------------------------	19	-	-	1
	----------------------CCAGAGACAGAGTGAGCGC--------------------------------------------------------------------	19	-	1	-
	--------------------TTCCAGAGACAGAGTGAGC----------------------------------------------------------------------	19	1	-	-
rat	tccagtcatcctggccaggaTTCCAGAGACAGAGTGAGCGCGCgcaggggctccggctctctgcggtgcacatttacctcgaagcctaggaacccggtgggaggcagga
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000059183 ENSRNOG00000024501 Rgs3
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000021287 ENSRNOG00000024501 Rgs3
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000059181 ENSRNOG00000024501 Rgs3
rat	(((.(((.((((.(((.((.((((.(((...(((((.((((.(((((((((....)))).))))))))).)))))..)))........)))))).)))))))))).)))	0.940 -45.50

rat

chromosome:5:79705602:79705710:1

block1887940 [novel_lenNOK_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.591	no	no	0.65/0.74	18/20/0.40	2.0	1.6	5	0	4	0	13	22	3arm	2	nd	0.26	2	5	4	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------UGGUGGG-----------------------------	2	novel
seed	--------------------------------------------------------------------------------CGUGGUG-------------------------------	1	novel
seed	---------------------------------------------------------------------------------------GGGAUGG------------------------	1	novel
seed	-------------------------------------------------------------------------------------UGGGGAU--------------------------	1	novel
		len	cloning frequencies
			T2S1	T3S1	T4S1	T5S1
	---------------------------------------------------------------------------------GTGGTGGGGATGGTGAGGAG-----------------	20	-	-	2	-
	--------------------------------------------------------------------------------------GGGGATGGTGAGGAGCGCC-------------	19	1	-	-	-
	------------------------------------------------------------------------------------GTGGGGATGGTGAGGAGC----------------	18	-	1	-	-
	-------------------------------------------------------------------------------CCGTGGTGGGGATGGTGAG--------------------	19	-	-	-	1
rat	tgctccgtgggacttttgtgtccccgccctccccctgggaccgcagcgggctgacagagccgggcgagcgctggcagttCCGTGGTGGGGATGGTGAGGAGCGCCggcttcgcgagca
	**********************************************************************************************************************
rat	.(((.(((((..((...(((..((((((.((((((((((((.((((((((((.....)))).......)))).)).)))))..)).))))).)))).))..))).))..)))))))).	0.410 -54.11

rat

chromosome:5:152639860:152639977:1

intergenic

novel_lenNOK_cloningOK_shortStem (308 loci)

block2199 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.235	no	no	0.67/0.67	18/18/0.00	0.0	0.0	8	0	3	0	2	25	3arm	2	nd	0.28	2	12	3	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------AGCAGCA------------	12	miR-15b/16/195/322/497
		len	cloning frequencies
			T3S1	T4S1	T4S2
	-----------------------------------------------------------------------CAGCAGCAGCCTGGTCTC--	18	2	8	2
rat	ctgctgcctgctctgcaatggacttgggcaggtctgaggtgtccaacattgtggggttgctaaagtggaacCAGCAGCAGCCTGGTCTCag
	*******************************************************************************************
rat	(((..(((.(((((((..(((((((.(((((.((((..(((.....)))..)))).))))).))))....))))))).)))..)))..)))	0.440 -31.50

rat

chromosome:10:4659292:4659382:-1

intergenic

block7160 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.120	no	no	0.44/0.44	18/18/0.00	0.0	0.0	11	0	4	0	1	7	5arm	1	nd	0.28	3	13	4	na	na

		reads	miRBase family seed
seed	--GUAGUGU------------------------------------------------------------	13	miR-142
		len	cloning frequencies
			T3S1	T3S2	T4S1	T5S2
	-TGTAGTGTTTCCATGGTG--------------------------------------------------	18	7	4	1	1
rat	cTGTAGTGTTTCCATGGTGtgtcctgctaacactcttcaggattttctccttatgtgatgctctgtagc
	*********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000025451 ENSRNOG00000018834 Sstr5
rat	((((((.((.(((((((...((((((...........)))))).....))..))).)).)).)))))).	0.760 -14.10

rat

chromosome:10:14744408:14744476:-1

block10231 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.179	no	no	0.35/0.39	18/20/0.63	0.0	0.0	10	0	6	0	1	29	5arm	1	nd	0.30	3	19	6	na	na

		reads	miRBase family seed
seed	--GGGGGUU---------------------------------------------------------------------------------------------------	19	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T4S2
	-TGGGGGTTTCTTTTTCTTTT---------------------------------------------------------------------------------------	20	7	-	3	-	1	1
	-TGGGGGTTTCTTTTTCTT-----------------------------------------------------------------------------------------	18	2	1	1	-	-	-
	-TGGGGGTTTCTTTTTCTTT----------------------------------------------------------------------------------------	19	1	-	1	1	-	-
rat	gTGGGGGTTTCTTTTTCTTTTcctttttcttgaagatttattttatgtatgtgagtacgttgttgctgtcctcagacacaccaggaaagggcgctggatcctgttaca
	************************************************************************************************************
rat	((((.((..(((...(((((((((.....((((.(((.......((((((....)))))).......))).)))).......)))))))))....)))..)).)))).	0.840 -25.74

rat

chromosome:10:20928548:20928655:-1

intergenic ## {Repeats: dust 20928635 20928648 0 class=dust,trf 11 24 0 class=trf}

block10851 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.101	no	no	0.44/0.47	18/20/0.04	0.0	0.0	21	0	10	0	2	10	5arm	1	nd	0.22	2	26	10	na	na

		reads	miRBase family seed
seed	---GGCUCAG----------------------------------------------------------------------	26	miR-24
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--TGGCTCAGAAGTAGTCTT------------------------------------------------------------	18	5	3	-	2	1	1	1	5	3	3
	--TGGCTCAGAAGTAGTCTTCT----------------------------------------------------------	20	-	-	-	-	-	-	-	-	-	1
	--TGGCTCAGAAGTAGTCTTC-----------------------------------------------------------	19	-	-	1	-	-	-	-	-	-	-
rat	ctTGGCTCAGAAGTAGTCTTctcactcttggggacgagtttgtacatcgttagtcaggagacttacatagttggcccaaa
	********************************************************************************
rat	.((((..(((..((((((((((.(((((((....)))).............))).)))))))).))....)))..)))).	0.750 -22.21

rat

chromosome:10:22907710:22907789:-1

intergenic

block11103 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.250	no	no	0.37/0.39	18/19/0.00	0.2	0.0	11	0	6	0	4	15	5arm	1	nd	0.26	3	11	6	na	na

		reads	miRBase family seed
seed	------GAACUUU-------------------------------------------------------------------------------	9	novel
seed	-----AGAACUU--------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S2	T2S1	T2S2	T3S1	T4S1	T5S1
	-----AGAACTTTGAAGAGAGAC---------------------------------------------------------------------	18	-	2	3	1	2	1
	----AAGAACTTTGAAGAGAGAC---------------------------------------------------------------------	19	1	1	-	-	-	-
rat	tcaaAAGAACTTTGAAGAGAGACttgcctctgcatttccagatgattgagatgaaagaaaaaaaagtctcttatttttgtgtttcctattgg
	********************************************************************************************
rat	.(((.((.((...((.(((((((((...(((.((((((.........))))))..))).....))))))))).))...)).....)).))).	0.830 -17.50

rat

chromosome:10:23669621:23669712:-1

intergenic

block26254 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.157	no	no	0.39/0.40	18/20/0.10	0.0	0.2	10	0	6	0	4	21	5arm	1	nd	0.20	2	10	6	na	na

		reads	miRBase family seed
seed	-----AACUGUG---------------------------------------------------------------------------------------------	10	novel
		len	cloning frequencies
			T1S1	T1S2	T4S1	T4S2	T5S1	T5S2
	----CAACTGTGCTGAATTAGT-----------------------------------------------------------------------------------	18	1	2	2	1	2	1
	----CAACTGTGCTGAATTAGTCA---------------------------------------------------------------------------------	20	1	-	-	-	-	-
rat	acatCAACTGTGCTGAATTAGTCAtttcatataaacagtctgtgctcaaccttgctcattatctgaaatgtggactttctggtgattattttagtcctggtatgt
	*********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000040746 ENSRNOG00000023143 LOC687766
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000037546 ENSRNOG00000023143 LOC687766
rat	((((..(((..((((((.((((((((((((((...(((..((.((........)).))....)))..))))))).......))))))).))))))...)))))))	0.960 -20.71

rat

chromosome:10:57988328:57988432:-1

block37689 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.011	no	no	0.44/0.47	18/19/0.00	0.0	0.3	10	0	6	0	1	38	3arm	1	nd	0.17	3	10	6	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------------GGGGGUU------------	10	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T4S2
	----------------------------------------------------------------------------------------------------TGGGGGTTAAACGTTTCA--	18	3	1	1	1	-	1
	----------------------------------------------------------------------------------------------------TGGGGGTTAAACGTTTCAG-	19	-	-	-	-	1	2
rat	tctgaaacctgataaccctgacccccataattctagggtgtggcagaagtctgtcgttgtttgccttctttttctgccttccttctaagtcttaaattttTGGGGGTTAAACGTTTCAGt
	************************************************************************************************************************
rat	.(((((((..........((((((((((((..((((((...((((((((......((.....))......))))))))..))))...))..)))......)))))))))...))))))).	0.820 -33.42