miR-Intess: classification

other hairpins

block1001847 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.174	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	2	25	3arm	12	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------UUGGUGG----------------	1	novel
		len	cloning frequencies
			T5S2
	------------------------------------------------------------------------CTTGGTGGCCAAAGCTGTTTCA--	22	1
rat	catgttggcggtggtgctctcaggcagggcagagcagacgcaggcctttgttcattctagcttggtgcctggCTTGGTGGCCAAAGCTGTTTCAtg
	************************************************************************************************
rat	((((..((((((..((((..(((((.((((((((((((.((((....))))....))).))))..))))).)))))..)).))..)))))).))))	0.910 -34.20

rat

chromosome:1:136114363:136114458:1

intergenic

novel_lenNOK_Multihit_loopOverlap (282 loci)

block26215 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.026	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	15	-1	3arm	33	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------UGCAUAA-------------------------	1	novel
		len	cloning frequencies
			T4S1
	--------------------------------------ATGCATAAAACACTTACA---------------	18	1
rat	tgggtttttttgtttgtttgtttgtttatatgcagtgtATGCATAAAACACTTACAtaacctgttttacct
	***********************************************************************
rat	.((((......((((((..((..((((.((((((.....))))))))))))..))).))).......))))	1.000 -13.72

rat

chromosome:10:57932918:57932988:-1

intergenic

block41495 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.341	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	17	-2	3arm_loop	26	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------UGUUUCU----------------------------	1	novel
		len	cloning frequencies
			T1S1
	------------------------------------------TTGTTTCTGTCACCTGACT-----------------	19	1
rat	ctggagaccccagctttgtaatcatgtgattggtcagaaacaTTGTTTCTGTCACCTGACTtcccagccagtgtctgg
	******************************************************************************
rat	(((((.((....(((......(((.((((.....(((((((...))))))))))).)))......)))..)).)))))	0.530 -17.80

rat

chromosome:10:88930610:88930687:-1

intergenic

block129637 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.289	no	no	0.40/0.50	19/20/0.50	0.0 0.0	0.0 0.3	1 3	0 0	1 1	0 0	8 0	-2 6	3arm_loop 3arm	18 18	nd nd	0.15 0.11	1 1	4	2	na	na

		reads	miRBase family seed
seed	---------------------------------------------GCAUUUU------------	3	novel
seed	-------------------------------------AGAUGCA--------------------	1	novel
		len	cloning frequencies
			T1S1	T5S2
	--------------------------------------------AGCATTTTGAACTGGGAGG-	19	-	2
	------------------------------------GAGATGCAAGCATTTTGAAC--------	20	1	-
	--------------------------------------------AGCATTTTGAACTGGGAGGC	20	-	1
rat	gcccaactgcagatctaagaggatgctagctattaaGAGATGCAAGCATTTTGAACTGGGAGGC
	****************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000003999 ENSRNOG00000002994 Popdc2
rat	(((...((.(((.((....((((((((.((.(((....))))).)))))))))).))))).)))	0.760 -14.20

rat

chromosome:11:64166758:64166821:-1

block321987 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.293	no	no	0.32/0.33	18/19/0.00	0.0	0.5	6	0	1	0	15	-3	3arm_loop	16	nd	0.28	2	6	1	na	na

		reads	miRBase family seed
seed	-------------------------------------AGGCAUA--------------------------	6	novel
		len	cloning frequencies
			T5S1
	------------------------------------TAGGCATAAGATGGTAAA----------------	18	3
	------------------------------------TAGGCATAAGATGGTAAAT---------------	19	3
rat	catctgattttagtcataggccctctctattgtgccTAGGCATAAGATGGTAAATcgcagagtctccgtg
	**********************************************************************
	--------------------------------------------------------------------------------	ENSRNOT00000058496 ENSRNOG00000003138 Fcgr2b
rat	.....((((((.((.((..(((.(((....(((((....)))))))).)))..)).))))))))......	0.950 -15.80

rat

chromosome:13:86880382:86880451:1

block332198 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	20	-3	3arm_loop	14	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------GAGGGCU------------------------------	1	novel
		len	cloning frequencies
			T4S2
	--------------------------------------TGAGGGCTTAGGAAAATT--------------------	18	1
rat	gggggaccttcttagttaggttttcctgggatcccaacTGAGGGCTTAGGAAAATTctcagggcaagtgggcctct
	****************************************************************************
rat	(((((.((..(((.(((.((((((((((((..(((......))))))))))))))).....))))))..)))))))	0.990 -28.30

rat

chromosome:14:120987:121062:-1

intergenic

block352565 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.654	no	no	0.44/0.55	18/20/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	35 28	-1 4	3arm 3arm	130 130	nd nd	0.39 0.30	3 3	2	2	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------GAUGGUG----------------------------------------	1	novel
seed	----------------------------------------------------GACAAGA---------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S2
	---------------------------------------------------AGACAAGATGGTGAAGGT-----------------------------------	18	1	-
	--------------------------------------------------------AGATGGTGAAGGTCGGTGTG----------------------------	20	-	1
rat	cctgttccagagacagccgcatctccttgtgcagcgccagcctcgtctcatAGACAAGATGGTGAAGGTCGGTGTGaagggatttggccgtattgggcgcctgg
	********************************************************************************************************
	...............................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000002985 ENSRNOG00000002195
rat	((.((.((....((.((((.(((.((((.((((.((((.((((((((.....)))..)).)))...)).)).))))))))))).)))).))....)).))..))	0.990 -33.60

rat

chromosome:14:47764831:47764934:-1

Same_strand|Boundary_non-coding|ENSRNOT00000002985|ENSRNOG00000002195 ## ENSRNOG00000002195|pseudogene||

block353544 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.105	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	40	-2	3arm_loop	28	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------CCUAGAA---------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	-----------------------------------------------------ACCTAGAATACCATGTGGA----------------------------------------	19	1
rat	gaataataacattgtagctgggtctgaatctgagttcaagaatggtatgagcaACCTAGAATACCATGTGGAttccttctggagaacatgcccaggatggaggtgaaagttc
	****************************************************************************************************************
rat	((((....((.((.((.((((((.((..((((((((((...(((((((.((....))...))))))).))))))).....)))...)).))))))..)).))))....))))	0.810 -28.60

rat

chromosome:14:49097119:49097230:-1

intergenic

block353640 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.026	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	40	-2	3arm_loop	28	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CCUAGAA---------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------------------------------------------ACCTAGAATACCATGTGGA----------------------------------------	19	1
rat	gaataataccttgtagctgggtctgaatctgagttcaagaatggtatgagcaACCTAGAATACCATGTGGAttccttctggagaacatgcccagaattgtggtgaaagttc
	***************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000049147 ENSRNOG00000032644
rat	((((..((((......((((((.((..((((((((((...(((((((.((....))...))))))).))))))).....)))...)).))))))......))))...))))	0.820 -32.20

rat

chromosome:14:49141075:49141185:-1

Opposite_strand|Intronic_coding|ENSRNOT00000049147|ENSRNOG00000032644 ## ENSRNOG00000032644|protein_coding||

block353644 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.026	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	40	-2	3arm_loop	28	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CCUAGAA---------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------------------------------------------ACCTAGAATACCATGTGGA----------------------------------------	19	1
rat	gaataataccttgtagctgggtctgaatctgagttcaagaatggtatgagcaACCTAGAATACCATGTGGAttccttctggagaacatgcccagaattgtggtgaaagttc
	***************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000049147 ENSRNOG00000032644
rat	((((..((((......((((((.((..((((((((((...(((((((.((....))...))))))).))))))).....)))...)).))))))......))))...))))	0.820 -32.20