other hairpins
novel_randfoldOK_nonpairedHIGH (271 loci)
block1576557 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.65/0.65 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 31 | 6 | 5arm | 8 | nd | 0.40 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------GGCCUGG------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------GGCCUGG----------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---------------------------------------------------------------------------GGGCCTGGGTGTAGTGTGCA----------------------- | 20 | 1 | |
| -------------------------------GGGCCTGGGTGTAGTGTGCA------------------------------------------------------------------- | 20 | 1 | |
| rat | gtgtgcattggacctgggtgtggtgtgcacaGGGCCTGGGTGTAGTGTGCAttggacctgggtgtagtgtgcacaGGGCCTGGGTGTAGTGTGCAccgggcctgggtgtggtgtgcac | ||
| ********************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000023856 ENSRNOG00000017720 Mxd1 | ||
| rat | (((..(((((.(((..(((.(((((..(((...(((..(((...(((..(((((.((....)).)))))..)))...)))..)))...)))..))))).)))..))).)))))..))) | 1.000 -72.00 |
| rat | chromosome:4:120811092:120811209:-1 | Same_strand|Intronic_coding|ENSRNOT00000023856|ENSRNOG00000017720 ## ENSRNOG00000017720|protein_coding|Mxd1|Max dimerization protein 1 (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q6TV20] ## {Repeats: trf 337 357 0 class=trf} |
block1696110 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.32/0.35 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 26 | 13 5 | 5arm 5arm | 1 1 | nd nd | 0.40 0.32 | 4 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------UUACAGG------------------------------------------------------------------------ | 1 | novel |
| seed | ---------------------ACAGUUU------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TACAGTTTTACAGGTTGTCT------------------------------------------------------------------ | 20 | 1 | |
| --------------------------TTTACAGGTTGTCTATGAAAGT---------------------------------------------------------- | 22 | 1 | |
| rat | tagtatcttgttccttggtcTACAGTTTTACAGGTTGTCTATGAAAGTaggccatttggcctattgctccttggactgctgtcttcctggagctaagggttactag | ||
| ********************************************************************************************************** | |||
| rat | (((((......(((((((.((.(((....((((...(((((.((.((((((((....))))))))..))..)))))..))))....))).))))))))).))))). | 0.990 -37.50 |
| rat | chromosome:4:164258465:164258570:1 | intergenic |
block1696404 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 5 | 3arm | 1 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------AGUAACA-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------TAGTAACATACCCAAAGTGAC------------------- | 21 | 1 | |
| rat | ggatggtctggaggtcactgtcaggattctgcataaagaaccttctttTAGTAACATACCCAAAGTGACtgcttggcccaggccacca | ||
| **************************************************************************************** | |||
| rat | ((.((((((((.(((((((....((((..(((..(((((....)))))..)))..)).))...))))))).......)))))))))). | 0.470 -28.90 |
| rat | chromosome:4:164270292:164270379:1 | intergenic |
block913078 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 10 | 27 | 5arm | 1 | nd | 0.35 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CUGCUCA------------------------------------------------------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ----------ACTGCTCAGGAGATCAGAGA------------------------------------------------------------------------------------------ | 20 | 1 | 1 | |
| rat | tcccatgtgaACTGCTCAGGAGATCAGAGAgtgagtgaggcaggtgtagttttgttcccatagaacaaggtatgtgtgagagagctcagacttggatggcttgtatagtgtcacctgggt | |||
| ************************************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000025847 ENSRNOG00000018985 Adrbk1 | |||
| rat | .((((.((((((((..((((..(((.(((..(((((....((..((((.((((((((.....))))))))))))..)).....)))))..))).)))..))))..)))).)))).)))). | 1.000 -39.70 | ||
| rat | chromosome:1:206891819:206891938:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000025847|ENSRNOG00000018985 ## ENSRNOG00000018985|protein_coding|Adrbk1|Beta-adrenergic receptor kinase 1 (EC 2.7.11.15) (Beta-ARK-1) (G- protein-coupled receptor kinase 2). [Source:UniProtKB/Swiss-Prot;Acc:P26817] |
block1848579 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 11 | 16 | 5arm | 1 | nd | 0.39 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------ACCUCAC--------------------------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----------TACCTCACCACATCTCTTTCTCT------------------------------------------------------------------------ | 23 | 1 | 1 | |
| rat | ctctatccttcTACCTCACCACATCTCTTTCTCTgaggacatttgcttggtttctctgagttccaacagtccttcagacagttgggggaggaaagaagaggagaga | |||
| ********************************************************************************************************** | ||||
| rat | ((((.(((((((.((((.((.((...((...(((((((((....((((((.....)))))).......))))).)))).)).)))).))))..))))).)))))). | 0.970 -33.50 | ||
| rat | chromosome:5:79249027:79249132:1 | intergenic |
block1889614 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.62/0.62 | 21/21/1.00 | 0.0 | 0.0 | 4 | 0 | 1 | 0 | 6 | 25 | 5arm | 1 | nd | 0.33 | 3 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------CACAUCA------------------------------------------------------------------------------------------------------ | 4 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------TCACATCAGCCTGAGGGACCC----------------------------------------------------------------------------------------- | 21 | 4 | |
| rat | gagcctTCACATCAGCCTGAGGGACCCaggagcctgcagaggaagcctacgacttagaaatcgtaggccaccgtgtggacttctgctcacgtcttcacttttgttagaggaggctc | ||
| ******************************************************************************************************************** | |||
| rat | (((((((((((..((..((((((...((((((.(((((..((..((((((((........))))))))..)).))))).))))))......))))))))..)))....)))))))) | 0.930 -45.70 |
| rat | chromosome:5:154401566:154401681:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (265 loci)
block1067479 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.448 | no | no | 0.45/0.50 | 20/26/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 25 30 20 | -4 -15 -3 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.70 0.62 0.50 | 5 6 4 | 3 | 2 | 0 | 4 |
| reads | miRBase family seed | |||
| seed | -------------------------------AGUAAAC---------------------------------------------- | 1 | novel | |
| seed | --------------------------ACCGCAG--------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------AUGCAAA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| --------------------------------------------AATGCAAACCACGAAACCAG-------------------- | 20 | 1 | - | |
| ------------------------------CAGTAAACAGCTCCAATGCAAACCAC---------------------------- | 26 | - | 1 | |
| -------------------------TACCGCAGTAAACAGCTCCA--------------------------------------- | 20 | - | 1 | |
| rat | ttcctcgtctctcatctcatggctgTACCGCAGTAAACAGCTCCAATGCAAACCACGAAACCAGccagctacaagaattgtgaa | |||
| ************************************************************************************ | ||||
| rat | .((..((..(((.......((((((...((..((.....((......))..))..))....))))))......)))..)).)). | 0.490 -12.02 | ||
| rat | chromosome:20:13214144:13214227:-1 | intergenic |
sblock10049 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.030 | no | no | 0.30/0.50 | 18/20/0.50 | 0.0 0.7 | 0.0 1.0 | 1 3 | 0 0 | 1 1 | 0 0 | 11 15 | -3 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.50 0.42 | 4 4 | 4 | 2 | 4 | 8 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------CAACUCU--------------------------- | 2 | novel | |
| seed | ------------UUCAGAG-------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------CACAACU----------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ----------------------------------------ACAACTCTGATTTCTTTTGT--------------- | 20 | - | 2 | |
| --------------------------------------CCACAACTCTGATTTCTTT------------------ | 19 | - | 1 | |
| -----------ATTCAGAGCTTCGGTCAC---------------------------------------------- | 18 | 1 | - | |
| rat | gcttcggtagaATTCAGAGCTTCGGTCACtttaacaaaCCACAACTCTGATTTCTTTTGTtttccaccctaaagc | |||
| *************************************************************************** | ||||
| rat | ((((.(((((((.((((((....(((...........)))....)))))).))))..........)))...)))) | 0.860 -14.70 | ||
| rat | chromosome:6:108496193:108496267:-1 | intergenic |
sblock10070 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.430 | no | no | 0.30/0.37 | 19/20/0.57 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 4 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 24 6 0 | -1 18 24 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.45 0.47 0.67 | 4 5 10 | 7 | 1 | 0 | -13 |
| reads | miRBase family seed | ||
| seed | -------------------------ACAAGUU---------------------------------------------------------- | 4 | novel |
| seed | ------------------------------------------------------------------------ACCAUCA----------- | 2 | novel |
| seed | ------------------------------------------------------------------AUUGAAA----------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------TACAAGTTGATGATGATACA---------------------------------------------- | 20 | 4 | |
| -----------------------------------------------------------------------AACCATCAGATGAAATCCA | 19 | 2 | |
| -----------------------------------------------------------------CATTGAAACCATCAGATGA------ | 19 | 1 | |
| rat | ctgtgggaagcagtgcctggaaaaTACAAGTTGATGATGATACAttggtgggcatctccttgtctcattgaAACCATCAGATGAAATCCA | ||
| ****************************************************************************************** | |||
| rat | ((((((....(((((...(((.....((((..((((....(((....)))..))))..))))))))))))...))).))).......... | 0.510 -19.20 |
| rat | chromosome:6:122552530:122552619:-1 | intergenic |
sblock10089 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.35/0.45 | 19/22/0.67 | 0.8 1.0 0.0 | 0.5 0.0 0.3 | 4 2 3 | 0 0 0 | 1 1 2 | 0 0 0 | 3 23 20 | 16 -4 10 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.35 0.45 0.42 | 4 5 4 | 9 | 2 | -6 | -6 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------GAGAAUA-------------------------------- | 3 | novel | |
| seed | ----AGAGCAA--------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -------GCAAGAC------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------UUACACA------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------ACACAAG----------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---TAGAGCAAGACAAGGTCTCA--------------------------------------------------------------------------- | 20 | - | 3 | |
| ----------------------------------------------------------TGAGAATAATGCTTTGGGA--------------------- | 19 | - | 2 | |
| -----------------------TTTACACAAGAGTTCCTTCTGA----------------------------------------------------- | 22 | - | 1 | |
| -------------------------TACACAAGAGTTCCTTCTGA----------------------------------------------------- | 20 | - | 1 | |
| ------AGCAAGACAAGGTCTCATT------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------------TGAGAATAATGCTTTGGGAT-------------------- | 20 | 1 | - | |
| rat | gtcTAGAGCAAGACAAGGTCTCATTTACACAAGAGTTCCTTCTGAtaaaggggaagctTGAGAATAATGCTTTGGGATgatttttaaggctctgggcc | |||
| ************************************************************************************************** | ||||
| rat | (((((((((....((((((...((((...((((..((((((.......))))))..)))).))))...))))))..............))))))))). | 0.490 -27.37 | ||
| rat | chromosome:6:122561536:122561633:-1 | intergenic |
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