other hairpins
block563832 [novel_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.467 | no | no | 0.65/0.65 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 30 | 5 | 3arm | 1 | 0 | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------UGGCCCC------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ------------------------------------------------------------------ATGGCCCCACACCTCCGTAG------------------------------ | 20 | 1 | |
| rat | tgggcctgggtgagctcgggtgctggtgcgacgggtgcggggcgatgggcgatgggctctggcttcATGGCCCCACACCTCCGTAGagagatgccccgatcgctacgctggtgcag | ||
| ******************************************************************************************************************** | |||
| >>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027126 ENSRNOG00000019990 NP_001100775.1 | ||
| rat | ((.(((..((((((((((((.((...((((..(((((.(((((.((((((...........))).))).))))).))))).)))).......)))))))..))).))))))).)). | 0.750 -51.20 |
| rat | chromosome:16:19428879:19428994:1 | Same_strand|Intronic_coding|ENSRNOT00000027126|ENSRNOG00000019990 ## ENSRNOG00000019990|protein_coding|NP_001100775.1| |
block811946 [novel_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.053 | no | no | 0.50/0.52 | 18/21/0.75 | 0.0 | 0.8 | 4 | 0 | 2 | 0 | 7 | 3 | 3arm | 1 | 0 | 0.28 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------AGGACAC-------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ----------------------------------------AAGGACACCTCTCTTCCTCA-------- | 20 | 2 | - | |
| ----------------------------------------AAGGACACCTCTCTTCCTCAG------- | 21 | - | 1 | |
| ----------------------------------------AAGGACACCTCTCTTCCT---------- | 18 | - | 1 | |
| rat | aagggataggaggaaggcagggacccagaggaaagcattcAAGGACACCTCTCTTCCTCAGgtgtttt | |||
| ******************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000022721 ENSRNOG00000016348 Tat | |||
| rat | ((((.((..((((((((.(((..((..(((.......)))..))...))).))))))))..)).)))) | 1.000 -20.60 | ||
| rat | chromosome:19:39861812:39861879:1 | Same_strand|Intronic_coding|ENSRNOT00000022721|ENSRNOG00000016348 ## ENSRNOG00000016348|protein_coding|Tat|Tyrosine aminotransferase (EC 2.6.1.5) (L-tyrosine:2-oxoglutarate aminotransferase) (TAT). [Source:UniProtKB/Swiss-Prot;Acc:P04694] |
block1310405 [novel_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.50/0.57 | 18/23/0.80 | 0.0 | 3.2 | 5 | 0 | 3 | 0 | 20 | 4 | 3arm | 1 | 3 | 0.22 | 2 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------UACCUAC----------------------------------- | 5 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| -------------------------------------------------------------------------TTACCTACTCCCACTCTGCCCA--------------------- | 22 | 1 | - | 1 | |
| -------------------------------------------------------------------------TTACCTACTCCCACTCTG------------------------- | 18 | - | 1 | - | |
| -------------------------------------------------------------------------TTACCTACTCCCACTCTGCCC---------------------- | 21 | 1 | - | - | |
| -------------------------------------------------------------------------TTACCTACTCCCACTCTGCCCAC-------------------- | 23 | - | - | 1 | |
| rat | catcctgcatacatctactgtactgtgtaatttcctgcagagtggtctgtggtctgaacttactgtcttgtccTTACCTACTCCCACTCTGCCCACcagtgattgatggtctggat | ||||
| ******************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000026514 ENSRNOG00000019590 LOC681012 | ||||
| rat | .((((......((((.....(((((.((........(((((((((...(((((....((..........))....))).))..)))))))))..)))))))...))))....)))) | 0.870 -29.30 | |||
| rat | chromosome:2:180472997:180473112:1 | Same_strand|Intronic_coding|ENSRNOT00000026514|ENSRNOG00000019590 ## ENSRNOG00000019590|protein_coding|LOC681012| |
block884602 [novel_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.32/0.38 | 19/23/0.75 | 0.8 | 1.9 | 8 | 0 | 4 | 0 | 14 | 15 | 3arm | 1 | 4 | 0.25 | 2 | 8 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------------------ACACUAA----------------------------- | 6 | novel | |||
| seed | ---------------------------------------------------------------------------------UACACUA------------------------------ | 2 | novel | |||
| len | cloning frequencies | |||||
| T3S1 | T3S2 | T4S1 | T4S2 | |||
| ---------------------------------------------------------------------------------TACACTAACAATTGTCTTC------------------ | 19 | 1 | - | 1 | - | |
| ---------------------------------------------------------------------------------TACACTAACAATTGTCTTCCAA--------------- | 22 | - | 1 | - | 1 | |
| ---------------------------------------------------------------------------------TACACTAACAATTGTCTTCCAAG-------------- | 23 | 1 | - | - | 1 | |
| --------------------------------------------------------------------------------CTACACTAACAATTGTCTTCC----------------- | 21 | - | 1 | - | - | |
| --------------------------------------------------------------------------------CTACACTAACAATTGTCTTC------------------ | 20 | - | 1 | - | - | |
| rat | cttaggtctgctgtgcaggggaggtggctggtaggtatgctgggtgaggtcatatgtggatgtagacatgtcctaaactgCTACACTAACAATTGTCTTCCAAGacagttgccctagg | |||||
| ********************************************************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000018021 ENSRNOG00000012002 NP_001101959.1 | |||||
| rat | ((((((...(((((....(((((..((.((.((((((.((.((...(((..((((((........)))))))))...))))))).))).)).))..)))))...)))))...)))))) | 0.510 -36.50 | ||||
| rat | chromosome:1:136584655:136584772:-1 | Same_strand|Intronic_coding|ENSRNOT00000018021|ENSRNOG00000012002 ## ENSRNOG00000012002|protein_coding|NP_001101959.1|IQ motif containing GTPase activating protein 1 [Source:RefSeq_peptide;Acc:NP_001101959] |
novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH (250 loci)
sblock10034 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.277 | no | no | 0.44/0.67 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 19 0 | 11 43 | 5arm 3arm | 1 1 | nd nd | 0.39 0.71 | 2 11 | 2 | 1 | 0 | -12 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------------UACACUG---------- | 1 | novel |
| seed | --------------------UCCCCGU------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -------------------ATCCCCGTCACTCACCCC--------------------------------------------------------------------------------- | 18 | 1 | |
| ----------------------------------------------------------------------------------------------------CTACACTGTTCCTGAGTA | 18 | 1 | |
| rat | agtgtccagagagcagagcATCCCCGTCACTCACCCCcgacccctgccaaggtcagaggctgcacaaaggaggagcatggggttgttcccctctgggtccCTACACTGTTCCTGAGTA | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000008374 ENSRNOG00000005602 Mthfd1 | ||
| rat | (((((((((((....(((((.((((((..(((..((.........(((.........)))........))..))).)))))).)))))..))))))......)))))........... | 0.650 -36.93 |
| rat | chromosome:6:98888287:98888404:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000008374|ENSRNOG00000005602 ## ENSRNOG00000005602|protein_coding|Mthfd1|C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3.4.3)]. [Source:UniProtKB/Swiss-Prot;Acc:P27653] |
sblock1015 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.045 | no | no | 0.56/0.83 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 9 4 | 11 18 | 5arm 3arm | 1 2 | nd nd | 0.33 0.33 | 3 2 | 2 | 2 | 4 | 5 |
| reads | miRBase family seed | |||
| seed | ----------UUACCAG---------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------UGGGAAG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S2 | |||
| -----------------------------------------------------------------CTGGGAAGGGGGCGGGGC---- | 18 | 1 | - | |
| ---------GTTACCAGACTCTGGAGC------------------------------------------------------------ | 18 | - | 1 | |
| rat | tctaaccctGTTACCAGACTCTGGAGCtcatagctttgcatcaatcccagagtgacactgggcttCTGGGAAGGGGGCGGGGCagac | |||
| *************************************************************************************** | ||||
| rat | (((..((((((..((...(((.((((((((..((((((.........)))))).....)))))))).)))..))..)))))).))). | 0.570 -32.00 | ||
| rat | chromosome:1:212465877:212465963:-1 | intergenic |
sblock10184 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.562 | no | no | 0.50/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 19 8 | 3 13 | 5arm 3arm | 1 1 | nd nd | 0.33 0.39 | 3 4 | 3 | 3 | 15 | 15 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------GGGGUAG------------------ | 2 | novel | ||
| seed | --------------------UCCUGUG---------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S2 | |||
| -----------------------------------------------------------TGGGGTAGTAGGAAACCA-------- | 18 | - | 1 | 1 | |
| -------------------CTCCTGTGACTGCTGTAG------------------------------------------------ | 18 | 1 | - | - | |
| rat | gggcacccaggggttcaccCTCCTGTGACTGCTGTAGaggtctcatcctcagagataggTGGGGTAGTAGGAAACCAggcgttcc | ||||
| ************************************************************************************* | |||||
| rat | ((((.((..((..(((((((((((((..((.((...((((......))))))))))))).)))))....)))..)).)).)))). | 0.540 -26.10 | |||
| rat | chromosome:6:137017689:137017773:-1 | intergenic |
sblock10192 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.247 | no | no | 0.55/0.63 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 6 10 | 8 7 | 5arm 3arm | 4 4 | nd nd | 0.50 0.37 | 3 2 | 2 | 1 | -5 | -4 |
| reads | miRBase family seed | ||
| seed | -------AGCACAC------------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------------------GGCCUGG--------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------TAGCACACTGAGGGTAGCTC------------------------------------------------ | 20 | 1 | |
| ---------------------------------------------GGGCCTGGACACACAGCAT---------- | 19 | 1 | |
| rat | tcagagTAGCACACTGAGGGTAGCTCagcctggacacttcccaagGGGCCTGGACACACAGCATgcatctctgg | ||
| ************************************************************************** | |||
| rat | .(((((..(((..(((...((..((..(((((((....)))....))))..))..)).)))..)))..))))). | 0.570 -22.10 |
| rat | chromosome:6:138236754:138236827:-1 | intergenic |
sblock10193 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.143 | no | no | 0.55/0.63 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 6 10 | 8 7 | 5arm 3arm | 4 4 | nd nd | 0.50 0.37 | 3 2 | 2 | 1 | -5 | -4 |
| reads | miRBase family seed | ||
| seed | -------AGCACAC------------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------------------GGCCUGG--------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------TAGCACACTGAGGGTAGCTC------------------------------------------------ | 20 | 1 | |
| ---------------------------------------------GGGCCTGGACACACAGCAT---------- | 19 | 1 | |
| rat | tcagagTAGCACACTGAGGGTAGCTCagcctggatacttcccaagGGGCCTGGACACACAGCATgcatctctgg | ||
| ************************************************************************** | |||
| rat | .(((((..(((..(((...((..((..(((((((....)))....))))..))..)).)))..)))..))))). | 0.850 -23.00 |
| rat | chromosome:6:138240640:138240713:-1 | intergenic |
sblock10230 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.56/0.63 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 13 | 19 14 | 5arm 3arm | 1 1 | nd nd | 0.32 0.39 | 3 2 | 2 | 2 | -5 | -5 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------AGGAGCU----------------------- | 1 | miR-28/708 | |
| seed | -----CCUCGGG------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -----------------------------------------------------------------AAGGAGCTCACAGTTCCC------------- | 18 | - | 1 | |
| ----TCCTCGGGTCCTGCTTGGT------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | cgccTCCTCGGGTCCTGCTTGGTactatcaagtcacagaggagagaatcagtcctcagtggtttaAAGGAGCTCACAGTTCCCtgagtgcagaggt | |||
| ************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010927 ENSRNOG00000007907 MGC94782 | |||
| rat | .(((((((((((..(((...(((.((...((..(((.(((((.........))))).)))..))...)).)))..)))..))).)))....))))) | 0.700 -30.50 | ||
| rat | chromosome:6:3927496:3927591:1 | Same_strand|Intronic_coding|ENSRNOT00000010927|ENSRNOG00000007907 ## ENSRNOG00000007907|protein_coding|MGC94782|Transmembrane protein 178 precursor. [Source:UniProtKB/Swiss-Prot;Acc:Q68FV0] |
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