other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (249 loci)
sblock9910 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.54/0.58 | 19/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 33 26 | -5 7 | 5arm_loop 3arm | 1 1 | nd nd | 0.46 0.32 | 6 2 | 2 | 1 | 10 | 0 |
| reads | miRBase family seed | ||
| seed | ----------------------------------CCGCUCA------------------------------------------------------------------------ | 1 | novel |
| seed | ---------------------------------------------------------------------AGCAGUU------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ---------------------------------GCCGCTCACTCTCAGTAGCTTAGA-------------------------------------------------------- | 24 | 1 | |
| --------------------------------------------------------------------GAGCAGTTTGGTGCCACTC-------------------------- | 19 | 1 | |
| rat | agtgttcctggtttgtgtctgtgagcgtctgcgGCCGCTCACTCTCAGTAGCTTAGAtaacgcatgtaGAGCAGTTTGGTGCCACTCgctcacacgaggggcccaggacactg | ||
| ***************************************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000009581 ENSRNOG00000007006 Slc3a1 | ||
| rat | ((((.((((((...((.((((((((((..((..((((...((((((..((((.........)).))..))).))).))))..))..))))))))...)).)))))))))))). | 0.940 -39.50 |
| rat | chromosome:6:8417909:8418021:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000009581|ENSRNOG00000007006 ## ENSRNOG00000007006|protein_coding|Slc3a1|Neutral and basic amino acid transport protein rBAT (B(0,+)-type amino acid transport protein) (NAA-TR) (D2). [Source:UniProtKB/Swiss-Prot;Acc:Q64319] |
sblock9967 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.651 | no | no | 0.47/0.55 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 15 | -3 3 | 5arm_loop 3arm | 1 1 | nd nd | 0.53 0.45 | 4 3 | 2 | 2 | 3 | 0 |
| reads | miRBase family seed | |||
| seed | ---------------------CAACGUU-------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------AUGCCGG--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| -------------------------------------------AATGCCGGTGTGATGACGGA--------------- | 20 | - | 1 | |
| --------------------ACAACGTTGGCTGTGTGTT--------------------------------------- | 19 | 1 | - | |
| rat | tacttcagtatattttatttACAACGTTGGCTGTGTGTTtgcaAATGCCGGTGTGATGACGGAaaagaaatcaatgta | |||
| ****************************************************************************** | ||||
| rat | ............(((..((....(((..(((..(((....)))...)))..)))...))..))).............. | 0.600 -12.50 | ||
| rat | chromosome:6:40251329:40251406:-1 | intergenic |
sblock6472 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.055 | no | no | 0.60/0.72 | 18/20/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 31 42 40 | 2 -7 0 | 5arm 5arm_loop_3arm 3arm | 1 2 2 | nd nd nd | 0.35 0.50 0.56 | 2 6 5 | 3 | 3 | -4 | -6 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------AGCAGCU-------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------GGUCUGU------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -------------------------------------------UCCCAGG------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T3S2 | |||
| ------------------------------------------CTCCCAGGATCCTACCAG--------------------------------------------------------- | 18 | 1 | - | - | |
| -------------------------------GGGTCTGTAACCTCCCAGGA------------------------------------------------------------------ | 20 | - | - | 1 | |
| -----------------------------------------------------------GAGCAGCTGGGCGGACCA---------------------------------------- | 18 | - | 1 | - | |
| rat | ggcagccttccgcaactctccgatcctctgtGGGTCTGTAACCTCCCAGGATCCTACCAGAGCAGCTGGGCGGACCAgactagccctcggggcctcggagtgtcagcattcctgtca | ||||
| ********************************************************************************************************************* | |||||
| rat | (((((......((.((.((((((..(((((.((((..((..((.(((((..((......))....))))).)).....))..)))).)))))..)))))).))..))....))))). | 0.770 -44.60 | |||
| rat | chromosome:2:123069305:123069421:1 | intergenic |
novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (242 loci)
block4934 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.41/0.41 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -2 | 3arm_loop | 1 | nd | 0.32 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------UAUUAAC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| --------------------------CTATTAACCCATAGCACCTTAC---- | 22 | 1 | |
| rat | gggggaggggtgggatagttgaaggcCTATTAACCCATAGCACCTTACtcca | ||
| **************************************************** | |||
| rat | ((((((((.(((((.((((.........)))).)))))....)))).)))). | 1.000 -17.90 |
| rat | chromosome:10:11076677:11076728:-1 | intergenic |
block11504 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.132 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -4 | 5arm_loop | 1 | nd | 0.41 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---AAGGGGU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| --CAAGGGGTGGAGTTGCAAAACA---------------------------- | 22 | 1 | |
| rat | tgCAAGGGGTGGAGTTGCAAAACAtatagctattgcaattcagattaaatgt | ||
| **************************************************** | |||
| rat | .(((...(((.(((((((((............)))))))))..)))...))) | 0.980 -9.70 |
| rat | chromosome:10:24967125:24967176:-1 | intergenic |
block26675 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.245 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -4 | 5arm_loop | 1 | nd | 0.50 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --ACCAAAG-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| -GACCAAAGCATGCAGAGCTCAC------------------------ | 22 | 1 | |
| rat | gGACCAAAGCATGCAGAGCTCACgactgtccctcatgctcctctctt | ||
| *********************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000020319 ENSRNOG00000014973 Tekt1 | ||
| rat | (((....((((((.((.((........))..))))))))....))). | 1.000 -8.30 |
| rat | chromosome:10:59220184:59220230:-1 | Same_strand|Intronic_coding|ENSRNOT00000020319|ENSRNOG00000014973 ## ENSRNOG00000014973|protein_coding|Tekt1|Tektin-1. [Source:UniProtKB/Swiss-Prot;Acc:Q99JD2] |
block31948 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.411 | no | no | 0.61/0.61 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -2 | 3arm_loop | 1 | nd | 0.45 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------CCCUGUC--------------- | 1 | miR-339 |
| len | cloning frequencies | ||
| T4S2 | |||
| ----------------------------TCCCTGTCACCCTAAGAGCCCTG | 23 | 1 | |
| rat | caggaattgaattgggaaaaggtgtcctTCCCTGTCACCCTAAGAGCCCTG | ||
| *************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049846 ENSRNOG00000007019 Accn1 | ||
| rat | ((((..((.....(((...(((........)))....)))...))..)))) | 0.920 -11.10 |
| rat | chromosome:10:69922019:69922069:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000009348|ENSRNOG00000007019 ## Same_strand|Intronic_coding|ENSRNOT00000049846|ENSRNOG00000007019 ## ENSRNOG00000007019|protein_coding|Accn1|Amiloride-sensitive cation channel 1, neuronal (Amiloride-sensitive brain sodium channel) (Amiloride-sensitive brain sodium channel 2) (Amiloride-sensitive cation channel neuronal 1) (Acid-sensing ion channel 2) (Brain sodium channel 1) (BNaC1) (BNC1) (Ma [Source:UniProtKB/Swiss-Prot;Acc:Q62962] |
block39273 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.130 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -4 | 3arm_loop | 1 | nd | 0.50 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------GAGCUGU------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------TGAGCTGTGACAGTCACCAG- | 20 | 1 | |
| rat | gcgtgacatccagTGAGCTGTGACAGTCACCAGc | ||
| ********************************** | |||
| rat | ..(((((.(((((....))).))..))))).... | 1.000 -9.80 |
| rat | chromosome:10:85349347:85349380:-1 | intergenic |
block40867 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.54/0.54 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -4 | 5arm_loop | 1 | nd | 0.50 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CACACUC-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ----GCACACTCCGCCTACATTGTCAGT---------------------------------- | 24 | 1 | |
| rat | atgtGCACACTCCGCCTACATTGTCAGTagactacaaatcccaacaatcttggcggtgcgca | ||
| ************************************************************** | |||
| rat | .((((((....(((((...(((((...................)))))...))))))))))) | 0.980 -16.91 |
| rat | chromosome:10:87548648:87548709:-1 | intergenic |
block47443 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 1 | -4 | 5arm_loop | 1 | nd | 0.45 | 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --GACCUGU---------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -CGACCTGTGCTCTCTTCCCT---------------------- | 20 | 2 | |
| rat | aCGACCTGTGCTCTCTTCCCTtctaagagtctatcagcccgta | ||
| ******************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005489 ENSRNOG00000004040 Abca8b | ||
| rat | (((..(((((..(((((.......)))))..)).)))..))). | 1.000 -8.30 |
| rat | chromosome:10:99410152:99410194:-1 | Same_strand|Intronic_coding|ENSRNOT00000005489|ENSRNOG00000004040 ## ENSRNOG00000004040|protein_coding|Abca8b|ATP-binding cassette, sub-family A (ABC1), member 8b Gene [Source:MGI (curated);Acc:Abca8b-002] |
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