other hairpins
novel_lenNOK_multiarm_loopOverlap (232 loci)
sblock9884 [novel_lenNOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.552 | no | no | 0.61/0.74 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 31 19 | -2 24 | 5arm_loop 3arm | 1 1 | nd nd | 0.26 0.44 | 3 5 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------GGGGUUU--------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------------CUACCUC----------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| -------------------------------TGGGGTTTGGGGGGGTGGG---------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------------GCTACCTCAGGTTCGTGC------------------- | 18 | 1 | - | |
| rat | gcccaactgtaggagtggtacctgacaggtgTGGGGTTTGGGGGGGTGGGgggggagagcatgtcccgggacactgcgcatgtGCTACCTCAGGTTCGTGCtcgttcgcagtctagggtt | |||
| ************************************************************************************************************************ | ||||
| rat | ((((.(((((..(((((..((((((((.(((((((((((.((((.(((...........))).)))).)))).)).))))).)).....))))))...)))))....)))))...)))). | 0.950 -42.80 | ||
| rat | chromosome:5:166957432:166957551:1 | intergenic ## {Repeats: dust 166957469 166957486 0 class=dust} |
sblock9962 [novel_lenNOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.332 | no | no | 0.47/0.50 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 35 16 | -4 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.42 0.11 | 4 1 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------UGGAUUG--------------------------------------------- | 4 | novel | |
| seed | -------------------------------------------------------UAGUUUA-------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| -----------------------------------ATGGATTGAGGCTATCTCC---------------------------------- | 19 | - | 4 | |
| ------------------------------------------------------GTAGTTTACCATGCCCGA---------------- | 18 | 1 | - | |
| rat | cggtgcgcgtggctagactcgctgtctggggctgtATGGATTGAGGCTATCTCCgtagtttaccatgcccgagactagctcggcaacg | |||
| **************************************************************************************** | ||||
| rat | ((.(((.((.(((((........((((.((((...((((....(((((((....))))))).)))))))).)))))))))))))).)) | 0.780 -30.60 | ||
| rat | chromosome:6:32409938:32410025:-1 | intergenic |
sblock9969 [novel_lenNOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.68/0.89 | 19/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 11 37 3 | 27 -6 28 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.37 0.58 0.16 | 4 5 2 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CUCCGGC------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------------UUCCCGG-------------- | 1 | novel | ||
| seed | ------------------------------------------------------------CCGCCUG------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S1 | |||
| -----------------------------------------------------------CCCGCCTGGCTAGTCTCTC------------------------------------- | 19 | 1 | - | - | |
| ---------------------------------------------------------------------------------------------GTTCCCGGGGTTAGGAGGC--- | 19 | - | - | 1 | |
| -----------CCTCCGGCCACGCCCCGCC------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | cccgcccctagCCTCCGGCCACGCCCCGCCaccgagctcagcagcaaagcttttccgttCCCGCCTGGCTAGTCTCTCtgccttgtctggcccGTTCCCGGGGTTAGGAGGCggg | ||||
| ******************************************************************************************************************* | |||||
| rat | (((((((((((((.((((..(((....((((.((((....((((....(((...(((........)))..)))....))))))))..)))).)))..))))))))))).)))))) | 0.550 -49.80 | |||
| rat | chromosome:6:40580923:40581037:-1 | intergenic ## {SimpF: -1 Eponine} |
novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (227 loci)
block7543 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.208 | no | no | 0.46/0.46 | 24/24/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 16 | -2 | 5arm_loop | 20 | nd | 0.46 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------UGCUUUC------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------TTGCTTTCTGACTCTGTGCTTGTG--------------------------------- | 24 | 2 | |
| rat | aagttgcacatttattTTGCTTTCTGACTCTGTGCTTGTGccttcaacactttcacagcgattttctgctcct | ||
| ************************************************************************* | |||
| rat | .((..(((........(((((...(((....(((.(((......))))))..))).))))).....)))..)) | 0.710 -9.72 |
| rat | chromosome:10:15367429:15367501:-1 | intergenic |
block27618 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.662 | no | no | 0.58/0.58 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | -3 | 5arm_loop | 24 | nd | 0.42 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------CUGUGAC------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ------GCTGTGACACACCCACCTACACAC-------------------------------- | 24 | 1 | |
| rat | tggactGCTGTGACACACCCACCTACACACtctttgcagatgaccggtgtcctatgctgttt | ||
| ************************************************************** | |||
| rat | .((((.((((.(((((...((.((.((.......)).)).))....))))).)).)).)))) | 0.980 -10.60 |
| rat | chromosome:10:61637693:61637754:-1 | intergenic |
block80191 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 1.000 | no | no | 0.65/0.65 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 36 | -2 | 3arm_loop | 21 | nd | 0.50 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CCAGUGU------------------------------------------------ | 2 | miR-199a |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------------------------------------------------------CCCAGTGTGACAGCCCTGAC------------------------------------ | 20 | 2 | |
| rat | tgtgacagcttgacttcccagtgtgacagcttgacttcccagtgtgacagcctgacttCCCAGTGTGACAGCCCTGACttcccagtgtgacagcttgacttcccagtgtgacag | ||
| ****************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000036278 ENSRNOG00000024535 Zzef1 | ||
| rat | (((.(((.((.((..((..(((((.(((.((........(((.((....(((((......))).))....)).))).......))))).))).)).))..))..))))).))). | 0.620 -19.26 |
| rat | chromosome:10:59795474:59795587:1 | Same_strand|Intronic_coding|ENSRNOT00000036278|ENSRNOG00000024535 ## ENSRNOG00000024535|protein_coding|Zzef1|zinc finger, ZZ-type with EF hand domain 1 Gene [Source:MGI (curated);Acc:Zzef1-001] ## {Repeats: trf 1118 1138 0 class=trf,trf 1119 1139 0 class=trf} |
block112949 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.41/0.41 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | -2 | 5arm_loop | 13 | nd | 0.50 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------AUACAAG-------------------------------------------- | 1 | miR-381 |
| len | cloning frequencies | ||
| T2S1 | |||
| -----------GATACAAGACAGGGAAGAACAA------------------------------ | 22 | 1 | |
| rat | gtttgaggagtGATACAAGACAGGGAAGAACAAatggtttttccagaagctttgcttttagat | ||
| *************************************************************** | |||
| rat | ((((((.((((((....((....((((((((.....)))))))).....)))))))))))))) | 0.970 -13.00 |
| rat | chromosome:11:18332426:18332488:-1 | intergenic |
block126386 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.659 | no | no | 0.58/0.58 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | -3 | 5arm_loop | 24 | nd | 0.42 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------CUGUGAC------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| -----GCTGTGACACACCCACCTACACAC-------------------------------- | 24 | 1 | |
| rat | ggaccGCTGTGACACACCCACCTACACACtatttgcagatgaccagtgtcctatgctgttt | ||
| ************************************************************* | |||
| rat | .(((.((((.(((((...((.((.((.......)).)).))....))))).)).)).))). | 0.950 -9.30 |
| rat | chromosome:11:55282659:55282719:-1 | intergenic |
block300971 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.382 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | -4 | 5arm_loop | 22 | nd | 0.45 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------AAUCAGC---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ----------------GAATCAGCTAGGCAGAAAGT---------------------------------------- | 20 | 1 | |
| rat | ccgaccttacctattcGAATCAGCTAGGCAGAAAGTctattcaagtcagctaggcagaaagtcgagaagtaagtgg | ||
| **************************************************************************** | |||
| rat | (((..(((((...(((((.((.(((.(((.((.............)).))).))).))...)))))..)))))))) | 0.820 -15.12 |
| rat | chromosome:13:34634944:34635019:1 | intergenic ## {Repeats: trf 28 48 0 class=trf} |
block309762 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.049 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | -3 | 3arm_loop | 44 | nd | 0.43 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------CUCUGCU----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---------------------------------CCTCTGCTTCTTCTCCTGCTT---------- | 21 | 1 | |
| rat | gccagcagctttcttctcagggtgggccagcagCCTCTGCTTCTTCTCCTGCTTtgtctctggc | ||
| **************************************************************** | |||
| rat | (((((..((........(((((..((..(((((...))))).))..)))))....))..))))) | 0.990 -19.30 |
| rat | chromosome:13:55805942:55806005:1 | intergenic |
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