other hairpins
novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH (199 loci)
block1973032 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.378 | no | no | 0.32/0.37 | 18/19/0.00 | 0.0 | 0.0 | 21 | 0 | 2 | 0 | 3 | 22 | 3arm | 1 | nd | 0.42 | 4 | 30 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------CUUAUGC-------------- | 24 | novel | |
| seed | -----------------------------------------------------------------------------------AUGCUAU----------- | 6 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -------------------------------------------------------------------------------ACTTATGCTATAAAGCCAA--- | 19 | 2 | 21 | |
| ----------------------------------------------------------------------------------TATGCTATAAAGCCAATGG | 19 | - | 6 | |
| -------------------------------------------------------------------------------ACTTATGCTATAAAGCCA---- | 18 | - | 1 | |
| rat | tccaatgatgtagtacatgtgaaaatgcaggcgtagctataattgaagcattataattaacttcagtgccttggttaacACTTATGCTATAAAGCCAAtgg | |||
| ***************************************************************************************************** | ||||
| rat | .(((.((.(((((((...(((..(((..((((.........(((((((..(((....))))))))))))))..)))..)))...)))))))....)).))) | 0.540 -18.40 | ||
| rat | chromosome:6:122560940:122561040:-1 | intergenic |
block1973095 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.799 | no | no | 0.26/0.35 | 18/26/0.45 | 0.0 | 0.3 | 6 | 0 | 4 | 0 | 1 | 31 | 3arm | 1 | nd | 0.35 | 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------------------------AAGAAUG------------- | 9 | novel | |||
| seed | ----------------------------------------------------------------------------------------GCUUUAA------------------ | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| --------------------------------------------------------------------------------------------TAAGAATGGTCAAAAACTTG- | 20 | - | - | - | 4 | |
| --------------------------------------------------------------------------------------------TAAGAATGGTCAAAAACTT-- | 19 | - | - | 1 | 2 | |
| --------------------------------------------------------------------------------------------TAAGAATGGTCAAAAACT--- | 18 | - | 1 | - | 1 | |
| ---------------------------------------------------------------------------------------TGCTTTAAGAATGGTCAAAAACTTGG | 26 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------TGCTTTAAGAATGGTCAAAAAC---- | 22 | 1 | - | - | - | |
| rat | ctaagctgaatgactgttatcgataagaaagcttacctttcctaaattcttcgaattttgtttctcttctgtgttaggtatttatattgcttTAAGAATGGTCAAAAACTTGg | |||||
| ***************************************************************************************************************** | ||||||
| rat | (((((.....((((((((.........(((((........(((((.......(((......))).........)))))..........)))))...))))))))....))))) | 0.610 -15.96 | ||||
| rat | chromosome:6:122562892:122563004:-1 | intergenic |
block1973096 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.943 | no | no | 0.21/0.21 | 19/24/0.31 | 0.0 | 1.4 | 11 | 0 | 5 | 0 | 4 | 22 | 3arm | 1 | nd | 0.33 | 4 | 16 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------------------------------------AGGUAUU-------------------- | 16 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------------TAGGTATTTATATTGCTTT--------- | 19 | 1 | 1 | - | 1 | 8 | |
| -------------------------------------------------------------------------------------TAGGTATTTATATTGCTTTAAGAA---- | 24 | 1 | - | 1 | - | 3 | |
| rat | tgccaagaagtctaagctgaatgactgttatcgataagaaagcttacctttcctaaattcttcgaattttgtttctcttctgtgtTAGGTATTTATATTGCTTTAAGAAtggt | ||||||
| ***************************************************************************************************************** | |||||||
| rat | .((((.....(((((((((((((.(((.(((.((..((.((((...........((((((...)))))).))))))..)).))).))).))))))....))))..))).)))) | 0.530 -14.60 | |||||
| rat | chromosome:6:122562903:122563015:-1 | intergenic |
block1167433 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.32/0.35 | 19/23/0.17 | 0.0 0.0 | 0.0 0.0 | 2 8 | 0 0 | 1 2 | 0 0 | 11 4 | -8 3 | 3arm_loop 3arm | 1 2 | nd nd | 0.48 0.32 | 7 4 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------GCAAUGA--------------- | 9 | novel | |
| seed | -------------------------------GACUCUU-------------------------- | 2 | novel | |
| seed | -------------------------------------------CAAUGAU-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------AGCAATGATACATAGCATA---- | 19 | 1 | 8 | |
| ------------------------------TGACTCTTTTCAGCAATGATACA----------- | 23 | - | 2 | |
| ------------------------------------------GCAATGATACATAGCATAT--- | 19 | - | 1 | |
| rat | gctgatgttgtgaatattttacctgaatcctgactcttttcAGCAATGATACATAGCATAtgct | |||
| **************************************************************** | ||||
| rat | ((..((((((((..((((....(((((...........)))))....))))))))))))..)). | 0.950 -13.60 | ||
| rat | chromosome:2:105759750:105759813:-1 | intergenic |
block1060822 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.419 | no | no | 0.42/0.48 | 18/25/0.36 | 0.2 | 2.8 | 19 | 0 | 4 | 0 | 4 | 29 | 3arm | 1 | nd | 0.36 | 5 | 33 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------------------GAGCAUC--------------------- | 25 | novel | |||
| seed | --------------------------------------------------------------------------------------------GCAUCUG------------------- | 3 | novel | |||
| seed | -------------------------------------------------------------------------------------------AGCAUCU-------------------- | 3 | novel | |||
| seed | -----------------------------------------------------------------------------------------UGAGCAU---------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------CUCCAUU---------------------------- | 1 | miR-136 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------------------------------------------TGAGCATCTGGGATTTCTTACCGAG---- | 25 | 1 | - | - | 8 | |
| -----------------------------------------------------------------------------------------TGAGCATCTGGGATTTCTT---------- | 19 | 1 | - | - | 8 | |
| -----------------------------------------------------------------------------------------TGAGCATCTGGGATTTCTTAC-------- | 21 | - | - | 2 | 1 | |
| ------------------------------------------------------------------------------------------GAGCATCTGGGATTTCTTAC-------- | 20 | - | - | - | 3 | |
| -----------------------------------------------------------------------------------------TGAGCATCTGGGATTTCTTACC------- | 22 | - | - | - | 2 | |
| ----------------------------------------------------------------------------------------TTGAGCATCTGGGATTTCT----------- | 19 | 1 | - | - | - | |
| -----------------------------------------------------------------------------------------TGAGCATCTGGGATTTCTTACCG------ | 23 | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------AGCATCTGGGATTTCTTAC-------- | 19 | - | - | - | 1 | |
| -----------------------------------------------------------------------------------------TGAGCATCTGGGATTTCT----------- | 18 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------TCTCCATTGAGCATCTGGGATT-------------- | 22 | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------AGCATCTGGGATTTCTTACC------- | 20 | - | 1 | - | - | |
| -------------------------------------------------------------------------------------------AGCATCTGGGATTTCTTACCGA----- | 22 | - | - | - | 1 | |
| rat | gagagcacgtgaccctccccagaagtcaggggccagtactactgagtgtacacagacagtgtctgagtatcttctagggccttctccatTGAGCATCTGGGATTTCTTACCGAGcctt | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((.((.(((((.....((((((.((((((((..((..((...(((.((((.(((((...))))).)))).)))..))..))..))).))).)).)))))).....))).)).))))) | 0.580 -32.50 | ||||
| rat | chromosome:20:5518246:5518363:-1 | intergenic |
block1060864 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.312 | no | no | 0.43/0.53 | 18/25/0.69 | 0.0 0.0 | 0.0 0.7 | 1 6 | 0 0 | 1 2 | 0 0 | 17 4 | 8 18 | 3arm 3arm | 2 2 | nd nd | 0.42 0.40 | 3 4 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------GAACUCU------------------ | 8 | novel | |
| seed | ------------------------------------------------------------------------UGAACUC------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------AGCUUUG------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------------------------CUGGCAG------------- | 1 | novel | |
| seed | ---------------------------------------------------------------GCUCAGC---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------------------------TGAACTCTGGCAGAAAGGCA------ | 20 | - | 4 | |
| ------------------------------------------------------------------------TGAACTCTGGCAGAAAGGCAAA---- | 22 | - | 2 | |
| ------------------------------------------------------------------------TGAACTCTGGCAGAAAGGC------- | 19 | 1 | - | |
| -----------------------------------------------------------------------TTGAACTCTGGCAGAAAGGCAAAGA-- | 25 | - | 1 | |
| --------------------------------------------------------------AGCTCAGCTTTGAACTCTG----------------- | 19 | - | 1 | |
| ------------------------------------------------------------------CAGCTTTGAACTCTGGCAGAAAGG-------- | 24 | - | 1 | |
| -----------------------------------------------------------------------------TCTGGCAGAAAGGCAAAG--- | 18 | - | 1 | |
| -----------------------------------------------------------------------TTGAACTCTGGCAGAAAGGCAAA---- | 23 | - | 1 | |
| ------------------------------------------------------------------------TGAACTCTGGCAGAAAGGCAAAG--- | 23 | - | 1 | |
| rat | ttcggcactccatggcccaagttctgtgcgtctctgcttgggcgacacttacacgtctctggagctcagcttTGAACTCTGGCAGAAAGGCAAAgaag | |||
| ************************************************************************************************** | ||||
| rat | (((.((.((.....(((..(((((...((......((((.((.(((........))).)).))))...))...)))))..)))....))))...))). | 0.920 -28.80 | ||
| rat | chromosome:20:5519443:5519540:-1 | intergenic |
block1067374 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.416 | no | no | 0.50/0.56 | 18/23/0.62 | 0.0 | 0.0 | 7 | 0 | 2 | 0 | 4 | 17 | 5arm | 1 | nd | 0.48 | 4 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----CCCAAGA-------------------------------------------------------------------------------------- | 13 | novel | |
| seed | ----------GACAAGA--------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------ACAAGAC-------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----TCCCAAGACAAGACCCAGAAGAG----------------------------------------------------------------------- | 23 | 1 | 7 | |
| ----TCCCAAGACAAGACCCAG---------------------------------------------------------------------------- | 18 | 1 | 2 | |
| ----TCCCAAGACAAGACCCAGA--------------------------------------------------------------------------- | 19 | - | 2 | |
| ---------AGACAAGACCCAGAAGAGCT--------------------------------------------------------------------- | 20 | - | 2 | |
| ----------GACAAGACCCAGAAGAGCT--------------------------------------------------------------------- | 19 | - | 1 | |
| rat | ggttTCCCAAGACAAGACCCAGAAGAGctaaactgacacggttcaagtgaaattcgagtgtcacccacattgctagtcgccgggcagcgttgaagcca | |||
| ************************************************************************************************** | ||||
| rat | ((((((....(((....(((.((..(((.....((((((..(((....)))......))))))........)))..))...)))....))))))))). | 0.860 -24.32 | ||
| rat | chromosome:20:13209741:13209838:-1 | intergenic |
block1093623 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.147 | no | no | 0.39/0.46 | 18/24/0.46 | 0.0 | 1.6 | 12 | 0 | 2 | 0 | 3 | 13 | 3arm | 2 | nd | 0.38 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------GAACGAU------------------- | 13 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------TGAACGATGTCTGTGAAAG-------- | 19 | - | 4 | |
| ------------------------------------------------------TGAACGATGTCTGTGAAA--------- | 18 | - | 3 | |
| ------------------------------------------------------TGAACGATGTCTGTGAAAGAGGTG--- | 24 | 1 | 2 | |
| ------------------------------------------------------TGAACGATGTCTGTGAAAGAG------ | 21 | - | 3 | |
| rat | gcaggaccagcgagcaggctgtcctcaggctgcagagtccatgcagtcatttccTGAACGATGTCTGTGAAAGAGGTGctg | |||
| ********************************************************************************* | ||||
| rat | .(((.(((.....((((((.(((.((((((((((.......)))))......)))))..)))))))))......))).))) | 0.740 -27.70 | ||
| rat | chromosome:20:5542476:5542556:1 | intergenic |
block1094059 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.147 | no | no | 0.39/0.46 | 18/24/0.46 | 0.0 | 1.6 | 12 | 0 | 2 | 0 | 3 | 13 | 3arm | 2 | nd | 0.38 | 6 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------GAACGAU------------------- | 13 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------TGAACGATGTCTGTGAAAG-------- | 19 | - | 4 | |
| ------------------------------------------------------TGAACGATGTCTGTGAAA--------- | 18 | - | 3 | |
| ------------------------------------------------------TGAACGATGTCTGTGAAAGAGGTG--- | 24 | 1 | 2 | |
| ------------------------------------------------------TGAACGATGTCTGTGAAAGAG------ | 21 | - | 3 | |
| rat | gcaggaccagcgagcaggctgtcctcaggctgcagagtccatgcagtcatttccTGAACGATGTCTGTGAAAGAGGTGctg | |||
| ********************************************************************************* | ||||
| rat | .(((.(((.....((((((.(((.((((((((((.......)))))......)))))..)))))))))......))).))) | 0.740 -27.70 | ||
| rat | chromosome:20:5557440:5557520:1 | intergenic |
novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (194 loci)
block53091 [novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.127 | no | no | 0.53/0.74 | 18/19/0.00 | 0.0 1.0 0.0 | 0.0 0.7 0.3 | 2 3 3 | 0 0 0 | 1 2 1 | 0 0 0 | 26 30 37 | -1 -7 -12 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.47 0.56 0.56 | 4 4 4 | 8 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------CCUCAGA--------------------------------------- | 3 | novel | |
| seed | ---------------------------AGCGCCA-------------------------------------------------- | 2 | novel | |
| seed | -------------------------------CCAGCCG---------------------------------------------- | 2 | novel | |
| seed | ----------------------------------GCCGCCU------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S2 | |||
| -------------------------------------GCCTCAGAGAACTGTACGT---------------------------- | 19 | - | 2 | |
| --------------------------GAGCGCCAGCCGCCTCAGA--------------------------------------- | 19 | - | 2 | |
| ------------------------------GCCAGCCGCCTCAGAGAAC----------------------------------- | 19 | 2 | - | |
| ---------------------------------AGCCGCCTCAGAGAACTG--------------------------------- | 18 | - | 1 | |
| -------------------------------------GCCTCAGAGAACTGTACG----------------------------- | 18 | - | 1 | |
| rat | ccgtgccgcgtctggctcctcagaagGAGCGCCAGCCGCCTCAGAGAACTGTACGTaagcgctcttcggatccgcgcgcgcgga | |||
| ************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000054970 ENSRNOG00000036697 Mafg | |||
| ---------------------------------------------------------------------------------------------- | ENSRNOT00000054954 ENSRNOG00000036686 RGD1561880_predicted | |||
| rat | (((((.(((((..((.(((...(((.((((((....((...(((....)))..))...)))))))))))).)))))))))))). | 0.740 -35.50 | ||
| rat | chromosome:10:109988353:109988436:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000054970|ENSRNOG00000036697 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000054954|ENSRNOG00000036686 ## Same_strand|Boundary_non-coding|ENSRNOT00000051462|ENSRNOG00000036697 ## ENSRNOG00000036697|protein_coding|Mafg|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G [Source:RefSeq_peptide;Acc:NP_071781] ## ENSRNOG00000036686|protein_coding|RGD1561880_predicted| ## {SimpF: -1 Eponine,oe = 1.01 -1 CpG} |
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