miR-Intess: classification

other hairpins

block683888 [novel_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	5	-2	3arm_loop	11	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------CCCAAAU------------------	1	novel
		len	cloning frequencies
			T3S1
	--------------------------------CCCCAAATTCTTGAAGTCTGG-----	21	1
rat	catcatcattctagtaagaagctggaagatggCCCCAAATTCTTGAAGTCTGGtgatg
	**********************************************************
rat	((((((((..((..((((((..(((.........)))..)))))).))..))))))))	0.810 -17.30

rat

chromosome:18:947458:947515:-1

intergenic

block803295 [novel_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.400	no	no	0.50/0.50	24/24/1.00	0.0	0.0	1	0	1	0	5	-2	3arm_loop	19	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------AUUGUCC---------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------------------------------CATTGTCCAGTGCCTGTCTTGAGA-----	24	1
rat	gggccttcatttccagtcttcagacaagtctgtcagcCATTGTCCAGTGCCTGTCTTGAGAtgtcc
	******************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000041121 ENSRNOG00000029942 LOC684084
rat	((((...........(((((.(((((.(((((.(((...)))..))).)).))))).)))))))))	0.560 -14.20

rat

chromosome:19:23357496:23357561:1

block803319 [novel_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.400	no	no	0.50/0.50	24/24/1.00	0.0	0.0	1	0	1	0	5	-2	3arm_loop	19	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------AUUGUCC---------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------------------------------CATTGTCCAGTGCCTGTCTTGAGA-----	24	1
rat	gggccttcatttccagtcttcagacaagtctgtcagcCATTGTCCAGTGCCTGTCTTGAGAtgtcc
	******************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000041121 ENSRNOG00000029942 LOC684084
rat	((((...........(((((.(((((.(((((.(((...)))..))).)).))))).)))))))))	0.560 -14.20

rat

chromosome:19:23401256:23401321:1

block1080344 [novel_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.020	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	36	-2	3arm_loop	11	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CCCAAAU-------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------------------------------------------------CCCCAAATTCTTGAAGTCTGG------------------------------------	21	1
rat	agtttgccgagctaaaagagaagatagatcatcgttctggtaagaagttggaagatgaCCCCAAATTCTTGAAGTCTGGtgatgctgccattgttgacatgctccctggcaagct
	*******************************************************************************************************************
rat	((((((((((((.....((.((..((((((((((..((..((((((.((((.........)))).)))))).))..))))))).)))...)).)).....))))...))))))))	0.980 -35.70

rat

chromosome:20:37542955:37543069:-1

intergenic

novel_lenNOK_Multihit_shortStem_randfoldOK (182 loci)

block207061 [novel_lenNOK_Multihit_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	2	9	3arm	33	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------UGCAUAA------------	1	novel
		len	cloning frequencies
			T4S1
	----------------------------------------------ATGCATAAAACACTTACA--	18	1
rat	tgtgtgtgtgtgtgtgtgtgtgcgcgcgtttgtttgtatgcagtgtATGCATAAAACACTTACAta
	******************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000051528 ENSRNOG00000031392
rat	((((((.((((...(((((((((((((((........)))).)))))))))))..)))).))))))	1.000 -26.60

rat

chromosome:12:3110569:3110634:1

Same_strand|Intronic_coding|ENSRNOT00000051528|ENSRNOG00000031392 ## ENSRNOG00000031392|protein_coding||

block207070 [novel_lenNOK_Multihit_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	2	9	3arm	33	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------UGCAUAA------------	1	novel
		len	cloning frequencies
			T4S1
	----------------------------------------------ATGCATAAAACACTTACA--	18	1
rat	tgtgtgtgtgtgtgtgtgtgtgcgcgcgtttgtttgtatgcagtgtATGCATAAAACACTTACAta
	******************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000051528 ENSRNOG00000031392
rat	((((((.((((...(((((((((((((((........)))).)))))))))))..)))).))))))	1.000 -26.60

rat

chromosome:12:3113170:3113235:1

Same_strand|Intronic_coding|ENSRNOT00000051528|ENSRNOG00000031392 ## ENSRNOG00000031392|protein_coding||

block207077 [novel_lenNOK_Multihit_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	2	7	3arm	33	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UGCAUAA------------	1	novel
		len	cloning frequencies
			T4S1
	--------------------------------------------ATGCATAAAACACTTACA--	18	1
rat	tgtgtgtgtgtgtgtgtgcgtgcgcgtttgtttgtatgcagtgtATGCATAAAACACTTACAta
	****************************************************************
rat	((((((.((((...(((((((((((...(((......))))))))))))))..)))).))))))	1.000 -25.50

rat

chromosome:12:3116155:3116218:1

intergenic

block218095 [novel_lenNOK_Multihit_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	2	26	5arm	16	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	---UCUUCUC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	--CTCTTCTCCATCTCCCAC--------------------------------------------------------------------	18	1
rat	ttCTCTTCTCCATCTCCCACagctgagaacaatccccagggttgggtgagtgtcccatcttgtctcctctgtgggatgtgggatagga
	****************************************************************************************
rat	.(((..((.((((.((((((((..((((........(((((.((((.......)))))))))))))..)))))))).))))))..)))	0.490 -36.20

rat

chromosome:12:19186116:19186203:1

intergenic

block433972 [novel_lenNOK_Multihit_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	0	18	3arm	28	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------GUGCCAC----------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------------TGTGCCACCATCTCATTC	18	1
rat	gactgtgattcaggccacaggctatgatttacgtttgtaggaattaaaatagccTGTGCCACCATCTCATTC
	************************************************************************
	----------------------------------------------------------------------------------	ENSRNOT00000046636 ENSRNOG00000033478
	----------------------------------------------------------------------------------	ENSRNOT00000061061 ENSRNOG00000039797 LOC501427
	----------------------------------------------------------------------------------	ENSRNOT00000061060 ENSRNOG00000039797 LOC501427
rat	((.((.(((...((.((((((((((..(((((....))))).......))))))))))))...))).)).))	1.000 -21.40

rat

chromosome:15:19392903:19392974:-1

Opposite_strand|Intronic_coding|ENSRNOT00000061061|ENSRNOG00000039797 ## ENSRNOG00000033478|protein_coding|| ## ENSRNOG00000039797|protein_coding|LOC501427|

block434066 [novel_lenNOK_Multihit_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	0	14	3arm	28	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------GUGCCAC----------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------------TGTGCCACCATCTCATTC	18	1
rat	gactgtgattcaggccacaggctatgatttacgtttgtaggaatcaaaatagccTGTGCCACCATCTCATTC
	************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000061053 ENSRNOG00000022493
	----------------------------------------------------------------------------------	ENSRNOT00000039935 ENSRNOG00000039784 LOC687107
	----------------------------------------------------------------------------------	ENSRNOT00000040982 ENSRNOG00000039784 LOC687107
	----------------------------------------------------------------------------------	ENSRNOT00000061042 ENSRNOG00000039784 LOC687107
	----------------------------------------------------------------------------------	ENSRNOT00000049092 ENSRNOG00000039784 LOC687107
rat	((.((.(((...((.(((((((((((((((..........))))))...)))))))))))...))).)).))	1.000 -23.10

rat

chromosome:15:19594777:19594848:-1

Opposite_strand|Intronic_coding|ENSRNOT00000039935|ENSRNOG00000039784 ## Same_strand|Intronic_coding|ENSRNOT00000061053|ENSRNOG00000022493 ## Same_strand|Boundary_non-coding|ENSRNOT00000038839|ENSRNOG00000022493 ## ENSRNOG00000022493|protein_coding|| ## ENSRNOG00000039784|protein_coding|LOC687107|

Page 29742

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Page 31204

miR-Intess™

block683888 [novel_Multihit_loopOverlap]

block803295 [novel_Multihit_loopOverlap]

block803319 [novel_Multihit_loopOverlap]

block1080344 [novel_Multihit_loopOverlap]

block207061 [novel_lenNOK_Multihit_shortStem_randfoldOK]

block207070 [novel_lenNOK_Multihit_shortStem_randfoldOK]

block207077 [novel_lenNOK_Multihit_shortStem_randfoldOK]

block218095 [novel_lenNOK_Multihit_shortStem_randfoldOK]

block433972 [novel_lenNOK_Multihit_shortStem_randfoldOK]

block434066 [novel_lenNOK_Multihit_shortStem_randfoldOK]