other hairpins
novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (172 loci)
block305660 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.57/0.57 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | -1 | 3arm | 1 | nd | 0.43 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------AGAUUGC------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| --------------------------------------------CAGATTGCCCTTGAGGGAGTCAC--------------------- | 23 | 1 | |
| rat | aggccgtgtggtctggccactcttcttcctcagctctttaaatgCAGATTGCCCTTGAGGGAGTCACaccttggcctctcacacccct | ||
| **************************************************************************************** | |||
| rat | (((..((((((...(((((.....((((((((((..(((......)))..))...))))))))........)))))..)))))).))) | 0.970 -28.42 |
| rat | chromosome:13:45961787:45961874:1 | intergenic |
block339144 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.70/0.70 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 43 | -3 | 5arm_loop_3arm | 1 | nd | 0.35 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------CUUUGGG--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------TCTTTGGGGGGTTGGGGGGG--------------------------------------------------------- | 20 | 1 | |
| rat | agtggtcaacgacagtgtgtgagcttctcttatccctggggttTCTTTGGGGGGTTGGGGGGGctccaacccacttcttcaagagcctggggagagaaagcagaattgagtgttgtcgcc | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002814 ENSRNOG00000002053 Fras1 | ||
| rat | .((((.(((((.((((.(((....(((((...((((..((.(((....((((((((((((...))))))))).))).....))).))..))))))))).)))..))))..))))))))). | 0.950 -46.40 |
| rat | chromosome:14:14700872:14700991:-1 | Same_strand|Intronic_coding|ENSRNOT00000002814|ENSRNOG00000002053 ## ENSRNOG00000002053|protein_coding|Fras1|Fraser syndrome 1 homolog (human) Gene [Source:MGI Symbol;Acc:MGI:2385368] ## {Repeats: dust 14700929 14700943 0 class=dust} |
block445591 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 35 | -3 | 3arm_loop | 2 | nd | 0.50 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------GUGCUGG----------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------GUGCUGG--------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ---------------------------------------------------TGTGCTGGTGTAGACCATGT----------------------------------- | 20 | 1 | |
| -----------------------------------------------------------------------------------TGTGCTGGTGTAGACCATGT--- | 20 | 1 | |
| rat | ccgtgtgggccagaggcatgtgctggtgtagagccgtgtgggccagaggcaTGTGCTGGTGTAGACCATGTgggccagaggcaTGTGCTGGTGTAGACCATGTggg | ||
| ********************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016616 ENSRNOG00000012440 Msra | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059135 ENSRNOG00000012440 Msra | ||
| rat | (((..((((((((..((((((.(((((......(((..(((..((..(((....)))..))....)))..))))))))..)))))).))))).....)))..))). | 0.790 -44.30 |
| rat | chromosome:15:43605011:43605116:-1 | Same_strand|Intronic_coding|ENSRNOT00000016616|ENSRNOG00000012440 ## ENSRNOG00000012440|protein_coding|Msra|Peptide methionine sulfoxide reductase (EC 1.8.4.11) (Protein- methionine-S-oxide reductase) (PMSR) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase). [Source:UniProtKB/Swiss-Prot;Acc:Q923M1] ## {Repeats: trf 19 39 0 class=trf} |
block1061222 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.27/0.45 | 19/23/0.75 | 0.0 0.6 | 0.0 2.4 | 3 5 | 0 0 | 1 2 | 0 0 | 37 26 | -8 2 | 3arm_loop 3arm | 1 1 | nd nd | 0.55 0.43 | 7 4 | 8 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AAGAACA----------------------------------------- | 4 | novel | |
| seed | -----------------------------------------------------------AAGAUGU--------------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------------------AACAUGA-------------------------------------- | 1 | miR-322* | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------------------TAAGATGTTTTAAGAACATGAG------------------------------------- | 22 | - | 3 | |
| --------------------------------------------------------------------TAAGAACATGAGGCAAATGGATC-------------------------- | 23 | - | 2 | |
| --------------------------------------------------------------------TAAGAACATGAGGCAAATG------------------------------ | 19 | - | 2 | |
| -----------------------------------------------------------------------GAACATGAGGCAAATGGATC-------------------------- | 20 | 1 | - | |
| rat | tccatctgtcacccatctctgcctccccttccccatcccccaaagcgtcccttttaaaTAAGATGTTTTAAGAACATGAGGCAAATGGATCgggtttggaggcagagggagatttgg | |||
| ********************************************************************************************************************* | ||||
| rat | .(((...(((.(((...(((((((((....(((.((((......((.((..(((((((........)))))))....)).))....)))).)))...)))))))))))).))).))) | 0.730 -41.50 | ||
| rat | chromosome:20:5532076:5532192:-1 | intergenic |
block1487701 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.47/0.63 | 19/23/0.83 | 0.0 0.0 | 0.6 0.0 | 10 1 | 0 0 | 1 1 | 0 0 | 19 13 | -5 5 | 3arm_loop 3arm | 1 1 | nd nd | 0.61 0.37 | 5 4 | 12 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------GACAGAA---------------------------------- | 11 | novel |
| seed | -------------------------------------------------CUCCAGA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------TGACAGAAACTCTCCAGAGAGTC------------------- | 23 | 7 | |
| --------------------------------------TGACAGAAACTCTCCAGAGAG--------------------- | 21 | 3 | |
| ------------------------------------------------TCTCCAGAGAGTCGGGGAG------------- | 19 | 1 | |
| --------------------------------------TGACAGAAACTCTCCAGAG----------------------- | 19 | 1 | |
| rat | ctgagagagttatcctcccagaagagctggaaaaactcTGACAGAAACTCTCCAGAGAGTCggggagcatagatcctcac | ||
| ******************************************************************************** | |||
| rat | .((((.((.((((.(((((.((....(((((.....((.....)).....)))))....)).))))).)))).)))))). | 0.960 -25.60 |
| rat | chromosome:3:115225043:115225122:1 | intergenic |
block1577889 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.42/0.50 | 19/24/0.86 | 0.0 | 0.0 | 4 | 0 | 1 | 0 | 31 | -3 | 3arm_loop | 1 | nd | 0.41 | 4 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------ACAGCAA--------------------------------------------- | 6 | novel |
| seed | -----------------------------------------------ACUACAG------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------TACAGCAACAGAGACAGAAGTG------------------------------- | 22 | 4 | |
| -------------------------------------------------TACAGCAACAGAGACAGAAGTGGG----------------------------- | 24 | 1 | |
| -------------------------------------------------TACAGCAACAGAGACAGAA---------------------------------- | 19 | 1 | |
| ----------------------------------------------TACTACAGCAACAGAGACAG------------------------------------ | 20 | 1 | |
| rat | accctggaaatctgaacaggtgccttccaaattcagatctgttgcttacTACAGCAACAGAGACAGAAGTGgggctcaaggcacataggcaaaccagaaggt | ||
| ****************************************************************************************************** | |||
| rat | (((((((...((((.....(((((((((...(((...(((((((((......)))))))))....)))...)))....)))))).))))....))))..))) | 0.890 -33.10 |
| rat | chromosome:4:122190278:122190379:-1 | intergenic |
novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH (170 loci)
block11428 [novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.428 | no | no | 0.39/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 34 23 | -15 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.50 0.44 | 4 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------CCCUUGG-------------------------------------- | 1 | novel | |
| seed | ----------------------------------------GGGGGGA--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S2 | |||
| ----------------------------------TCCCTTGGGGGGAAAATA---------------------------- | 18 | - | 1 | |
| ---------------------------------------TGGGGGGAAAATAAAGTT----------------------- | 18 | 1 | - | |
| rat | cagagtgttaataagtgttttgctatataaatctTCCCTTGGGGGGAAAATAAAGTTatttcacattgtcaaatggttgt | |||
| ******************************************************************************** | ||||
| rat | ((...((.((((..(((....(((.(((...((..((....))..))..))).))).....))))))).))..))..... | 0.850 -13.40 | ||
| rat | chromosome:10:24730960:24731039:-1 | intergenic |
block44084 [novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.242 | no | no | 0.40/0.56 | 20/25/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 26 8 | -22 5 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.44 0.40 | 5 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------UGGGUGA--------------------------------- | 1 | novel | |
| seed | ----------------------------------------CCAAAUA-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ---------------------------------------ACCAAATACGCATTTCCTGA-------- | 20 | 1 | - | |
| --------------------------CTGGGTGACAGGCACCAAATACGCA---------------- | 25 | - | 1 | |
| rat | agtgctttcggagctttgggcagcaaCTGGGTGACAGGCACCAAATACGCATTTCCTGAtaaagcac | |||
| ******************************************************************* | ||||
| rat | .((((((((((((((((((...((..(((.....))))).)))))...))...))).))..)))))) | 0.470 -17.00 | ||
| rat | chromosome:10:92614871:92614937:-1 | intergenic |
block166427 [novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.456 | no | no | 0.50/0.52 | 22/25/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 24 1 | -19 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.45 0.32 | 6 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------UGCACAG------------------ | 1 | novel |
| seed | -------------------------CAGACAU-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ------------------------GCAGACATGTGCACAGATGTGT------------ | 22 | 1 | |
| --------------------------------GTGCACAGATGTGTTCCACTTCCCT- | 25 | 1 | |
| rat | aggatgtgatctgagacccactttGCAGACATGTGCACAGATGTGTTCCACTTCCCTa | ||
| ********************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041844 ENSRNOG00000002255 LOC360721 | ||
| rat | (((....((..((..((.((((.((((......)))).)).)).))..))..))))). | 0.610 -11.10 |
| rat | chromosome:11:66544830:66544887:1 | Same_strand|Boundary_non-coding|ENSRNOT00000003069|ENSRNOG00000002255 ## Same_strand|Intronic_coding|ENSRNOT00000041844|ENSRNOG00000002255 ## ENSRNOG00000002255|protein_coding|LOC360721|E2-induced gene 5 protein homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q4QQV3] |
block168983 [novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.283 | no | no | 0.52/0.56 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 52 36 | -17 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.43 0.33 | 6 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------UCAUGCC------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------CUGACAU---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ----------------------------------------------------GTCATGCCTCTGACATTCCTG----------------------------------------- | 21 | - | 1 | |
| ------------------------------------------------------------TCTGACATTCCTGTCCCG------------------------------------ | 18 | 1 | - | |
| rat | agctttgcaaaagcaataatagaaaacagaatgcatgctttggaaagggaaaGTCATGCCTCTGACATTCCTGTCCCGtttttttcaagctcacatttatccttgcgcatgagc | |||
| ****************************************************************************************************************** | ||||
| rat | .(((((((....((((..(((((....((..((.......(((...(((((.((((......)))).)))))...))).......))..))....)))))..))))))).)))) | 0.450 -23.64 | ||
| rat | chromosome:11:71374928:71375041:1 | intergenic |
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