other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap (169 loci)
sblock9604 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.836 | no | no | 0.44/0.67 | 18/20/0.25 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 46 34 27 | 0 -1 4 | 5arm 3arm 3arm | 55 130 130 | nd nd nd | 0.50 0.11 0.15 | 5 1 2 | 4 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------GCAGUGC------------------------------------------------------------------ | 2 | novel | ||
| seed | --------------------------------------------------------------------------GAUGGUG--------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------GACAAGA-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S2 | |||
| ----------------------------------------------TGCAGTGCCAGCCTCGTC-------------------------------------------------------- | 18 | - | 2 | - | |
| --------------------------------------------------------------------AGACAAGATGGTGAAGGT---------------------------------- | 18 | 1 | - | - | |
| -------------------------------------------------------------------------AGATGGTGAAGGTCGGTGTG--------------------------- | 20 | - | - | 1 | |
| rat | aaggctctctgctcctccctgttccagagacagccgcatcttctcgTGCAGTGCCAGCCTCGTCtcacAGACAAGATGGTGAAGGTCGGTGTGaatggatttggccgtattgggcgcctg | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((.(((........((...((((...(((.(((.((((((.........((((..((.(((.....))).)).))))))))))))))))...))))...)).......))).)))). | 0.770 -35.86 | |||
| rat | chromosome:5:162350867:162350986:-1 | intergenic |
sblock9607 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.689 | no | no | 0.45/0.63 | 18/21/0.40 | 0.0 0.0 0.5 0.0 | 0.0 0.0 0.5 0.0 | 1 1 2 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 10 38 27 6 | 26 -3 3 26 | 5arm 5arm_loop 3arm 3arm | 24 24 24 24 | nd nd nd nd | 0.35 0.43 0.37 0.22 | 3 5 4 2 | 5 | 5 | 3 | 0 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------------------------------------------CCUGUAG---------------- | 1 | miR-10b | ||||
| seed | ------------------------------------------------------------------CCUGUUC-------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------------ACCUGUU--------------------------------------- | 1 | novel | ||||
| seed | -----------GAAUUGA--------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------UGCUCGA----------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S2 | T4S1 | T5S1 | |||
| ---------------------------------------------------------------------------------------CCCTGTAGAGAAGGCCCT------ | 18 | - | 1 | - | - | - | |
| -----------------------------------------------------------------ACCTGTTCCGTGGCACACT--------------------------- | 19 | - | - | 1 | - | - | |
| --------------------------------------GTGCTCGATTTGAGGAGTTGA---------------------------------------------------- | 21 | - | - | - | - | 1 | |
| ----------------------------------------------------------------GACCTGTTCCGTGGCACAC---------------------------- | 19 | 1 | - | - | - | - | |
| ----------GGAATTGACTTCTACACCTC--------------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | tctctatgagGGAATTGACTTCTACACCTCcattacccGTGCTCGATTTGAGGAGTTGAatgctGACCTGTTCCGTGGCACACTggaCCCTGTAGAGAAGGCCCTtcgaga | ||||||
| *************************************************************************************************************** | |||||||
| rat | ((((...(((((..((...(((((((..((((......(((((((.....((((((.....)))..)))....)).)))))..))))...)))))))))..))))).)))) | 0.740 -28.20 | |||||
| rat | chromosome:5:162477732:162477842:-1 | intergenic |
sblock9767 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.47/0.50 | 19/20/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 8 17 | 2 -3 | 5arm 3arm_loop | 16 16 | nd nd | 0.26 0.35 | 3 5 | 3 | 2 | -5 | -6 |
| reads | miRBase family seed | |||
| seed | ----------------------------------GGAGAGA----------------------------- | 2 | miR-185 | |
| seed | ---------GAGGUGU------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| ---------------------------------CGGAGAGATCATAGGCAAAC----------------- | 20 | 2 | - | |
| --------TGAGGTGTGGATGTGGTTT------------------------------------------- | 19 | - | 1 | |
| rat | gtggctacTGAGGTGTGGATGTGGTTTttatatCGGAGAGATCATAGGCAAACatggcattgttggctat | |||
| ********************************************************************** | ||||
| -------------------------------------------------------------------------------- | ENSRNOT00000010173 ENSRNOG00000007299 MGC125002 | |||
| rat | (((((((.((..((((...((((((((((.......)))))))))).....))))..))....))))))) | 0.950 -16.90 | ||
| rat | chromosome:5:114815483:114815552:1 | Opposite_strand|Intronic_coding|ENSRNOT00000010173|ENSRNOG00000007299 ## ENSRNOG00000007299|protein_coding|MGC125002|similar to RIKEN cDNA 5830433M19 (MGC125002), mRNA [Source:RefSeq_dna;Acc:NM_001034154] |
sblock7748 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.171 | no | no | 0.33/0.40 | 18/24/0.33 | 0.0 0.0 0.7 1.0 | 0.0 0.0 1.0 0.5 | 1 1 3 4 | 0 0 0 0 | 1 1 2 3 | 0 0 0 0 | 0 16 25 0 | 24 12 -1 23 | 5arm 5arm 3arm 3arm | 3 10 15 18 | nd nd nd nd | 0.42 0.15 0.32 0.25 | 6 2 4 3 | 9 | 4 | -14 | -13 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------------------ACAGAAU----------- | 2 | novel | |||
| seed | -----------------------------------------------------------------UGGAAAC-------------------------------------- | 2 | novel | |||
| seed | -----------------GUGUGUG-------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------------------CAGAAUU---------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------GUCACAG-------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------GAAACAA------------------------------------ | 1 | novel | |||
| seed | -UGGACCA------------------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T5S2 | |||
| -------------------------------------------------------------------------------------------CACAGAATTTTGAGACCAT | 19 | 2 | - | - | - | |
| ----------------------------------------------------------------ATGGAAACAACTTGACCA---------------------------- | 18 | 2 | - | - | - | |
| ------------------------------------------------------------------GGAAACAACTTGACCAAAA------------------------- | 19 | - | - | - | 1 | |
| --------------------------------------------------------------------------------------------ACAGAATTTTGAGACCAT | 18 | - | - | 1 | - | |
| ----------------TGTGTGTGGCAGTTTTAAGT-------------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| GTGGACCATTTTTTTTTGTGTGTG-------------------------------------------------------------------------------------- | 24 | 1 | - | - | - | |
| ----------------------------------------------------------------------------------------TGTCACAGAATTTTGAGACC-- | 20 | - | 1 | - | - | |
| rat | GTGGACCATTTTTTTTTGTGTGTGGCAGTTTTAAGTtattagttttcaaaatcagtactttttaATGGAAACAACTTGACCAAAAatcTGTCACAGAATTTTGAGACCAT | |||||
| ************************************************************************************************************** | ||||||
| ------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000022996 ENSRNOG00000017086 LOC296300 | |||||
| rat | ((((......((((...((.((((((((((((..((((...(((((((.................)))))))....))))..)))).))))))))..))...)))))))) | 0.410 -19.43 | ||||
| rat | chromosome:3:145106483:145106592:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000022996|ENSRNOG00000017086 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000047286|ENSRNOG00000017086 ## ENSRNOG00000017086|protein_coding|LOC296300|similar to zinc finger protein 341 [Source:RefSeq_peptide;Acc:NP_001041324] ## {Repeats: dust 145106576 145106584 0 class=dust,dust 145106576 145106577 0 class=dust} |
sblock8580 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.123 | no | no | 0.58/0.63 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 16 33 20 | 10 -7 15 | 5arm 5arm_loop 3arm | 137 137 137 | nd nd nd | 0.11 0.47 0.33 | 1 8 4 | 4 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------AGGCUGU---------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------------------------------------CUUCCGU------------------------------ | 1 | novel | |||
| seed | ----------------------------------AUCCCAG----------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T4S1 | T5S2 | |||
| ----------------AAGGCTGTGGGCAAGGTCA----------------------------------------------------------------------- | 19 | 1 | - | - | 1 | |
| --------------------------------------------------------------------CCTTCCGTGTTCCTACCC-------------------- | 18 | - | - | 1 | - | |
| ---------------------------------CATCCCAGAGCTGAACGGG------------------------------------------------------ | 19 | - | 1 | - | - | |
| rat | atccactggtgctgccAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGaagctcactggaatggCCTTCCGTGTTCCTACCCtcaatgtatccattatggat | |||||
| ********************************************************************************************************** | ||||||
| rat | (((((.((((((.....(((.((.((((((((((((.((((((((........)))))..))).)))))))....))))).)).)))....))).)))...))))) | 0.670 -34.30 | ||||
| rat | chromosome:4:132437832:132437937:-1 | intergenic |
novel_shortStem_loopOverlap_nonpairedHIGH (164 loci)
block20790 [novel_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.790 | no | no | 0.76/0.76 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -4 | 3arm_loop | 1 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CCACGAC----------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ---------------------------GCCACGACGCAGCCCGGTACC---- | 21 | 1 | |
| rat | ggttcctacttcgcgcagcagcgttgtGCCACGACGCAGCCCGGTACCggcc | ||
| **************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058155 ENSRNOG00000003463 Srebf1 | ||
| -------------------------------------------------------------- | ENSRNOT00000005237 ENSRNOG00000003847 4933439F18Rik | ||
| rat | ((((..((((..((......((((((.....)))))).))..))))..)))) | 0.430 -14.00 |
| rat | chromosome:10:46718605:46718656:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000004753|ENSRNOG00000003463 ## Same_strand|Intronic_coding|ENSRNOT00000058155|ENSRNOG00000003463 ## Opposite_strand|Intronic_coding|ENSRNOT00000005237|ENSRNOG00000003847 ## ENSRNOG00000003847|protein_coding|4933439F18Rik|RIKEN cDNA 4933439F18 gene Gene [Source:MGI Symbol;Acc:MGI:1914021] ## ENSRNOG00000003463|protein_coding|Srebf1|Sterol regulatory element-binding protein 1 (SREBP-1) (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) [Contains: Processed sterol regulatory element-binding protein 1] (Fr [Source:UniProtKB/Swiss-Prot;Acc:P56720] |
block50464 [novel_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.560 | no | no | 0.38/0.39 | 21/23/1.00 | 0.0 | 1.0 | 2 | 0 | 2 | 0 | 2 | -3 | 5arm_loop | 1 | nd | 0.48 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---CCAAUGA------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| --ACCAATGAAAGAGTCATTCCA----------------------------- | 21 | - | 1 | |
| --ACCAATGAAAGAGTCATTCCACA--------------------------- | 23 | 1 | - | |
| rat | acACCAATGAAAGAGTCATTCCACAtgaccgggctgtgtttgcatctgtgta | |||
| **************************************************** | ||||
| rat | ((((..(((.(((...((..((........))..))..))).)))..)))). | 0.880 -8.70 | ||
| rat | chromosome:10:105901076:105901127:-1 | intergenic |
block51926 [novel_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | -1 | 5arm_loop | 1 | nd | 0.45 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----CACCAUU------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---GCACCATTTACTGAGATCTA------------------------- | 20 | 1 | |
| rat | cagGCACCATTTACTGAGATCTAgctagagggtagttttctgggtttg | ||
| ************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004035 ENSRNOG00000003028 Q63172_RAT | ||
| rat | (((((.(((...((((...(((....)))...))))....)))))))) | 1.000 -10.70 |
| rat | chromosome:10:108101726:108101773:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000004047|ENSRNOG00000003028 ## Same_strand|Intronic_coding|ENSRNOT00000004035|ENSRNOG00000003028 ## ENSRNOG00000003028|protein_coding|Q63172_RAT|Dynein-like protein 9B (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q63172] |
block86345 [novel_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.457 | no | no | 0.50/0.50 | 24/24/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 1 | -2 | 5arm_loop | 1 | nd | 0.38 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --GGAACCU--------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -TGGAACCTGAAAGTCAGATGGTGC----------------------------------- | 24 | 2 | |
| rat | cTGGAACCTGAAAGTCAGATGGTGCatagcatggagactattgaatttaataggatacag | ||
| ************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003600 ENSRNOG00000002612 Ddx52 | ||
| rat | (((...((((.((((..((((((.............))))))..))))..))))...))) | 0.930 -9.02 |
| rat | chromosome:10:72244165:72244224:1 | Same_strand|Intronic_coding|ENSRNOT00000003600|ENSRNOG00000002612 ## ENSRNOG00000002612|protein_coding|Ddx52|Probable ATP-dependent RNA helicase DDX52 (EC 3.6.1.-) (DEAD box protein 52) (ATP-dependent RNA helicase ROK1-like) (rROK1L). [Source:UniProtKB/Swiss-Prot;Acc:Q99PT0] |
block88349 [novel_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -2 | 3arm_loop | 1 | nd | 0.35 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------UGUUCUG------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ------------------------TTGTTCTGATCTGTGCACCT- | 20 | 1 | |
| rat | tggggggcacttcttcagtacaccTTGTTCTGATCTGTGCACCTa | ||
| ********************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055760 ENSRNOG00000007367 Sept4 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055757 ENSRNOG00000007367 Sept4 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009814 ENSRNOG00000007367 Sept4 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044226 ENSRNOG00000007367 Sept4 | ||
| rat | ..(((.((((....((((.((.....)).))))...)))).))). | 1.000 -15.20 |
| rat | chromosome:10:75880607:75880651:1 | Same_strand|Intronic_coding|ENSRNOT00000044226|ENSRNOG00000007367 ## Same_strand|Intronic_non-coding|ENSRNOT00000055757|ENSRNOG00000007367 ## Same_strand|Boundary_non-coding|ENSRNOT00000039372|ENSRNOG00000007367 ## ENSRNOG00000007367|protein_coding|Sept4|septin 4 [Source:RefSeq_peptide;Acc:NP_001011893] |
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