other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap (162 loci)
sblock778 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.493 | no | no | 0.44/0.58 | 18/24/0.36 | 0.0 0.0 0.0 0.0 1.2 | 0.2 2.0 0.5 0.0 0.8 | 8 2 4 1 5 | 0 0 0 0 0 | 2 2 1 1 2 | 0 0 0 0 0 | 2 17 41 50 0 | 29 10 -9 -18 37 | 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 3 3 3 | nd nd nd nd nd | 0.40 0.25 0.50 0.53 0.28 | 3 2 6 6 3 | 22 | 4 | -1 | 3 |
| reads | miRBase family seed | |||||
| seed | ---CAGCACA---------------------------------------------------------------------------------------------------------- | 9 | novel | |||
| seed | ------------------------------------------GUGUGUU------------------------------------------------------------------- | 4 | novel | |||
| seed | -----------------------------------------------------------------------------------------------ACUCAAA-------------- | 3 | novel | |||
| seed | --------------------------------------------------------------------------------------------------CAAAGCC----------- | 2 | novel | |||
| seed | ------------------GGCAACA------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------------------GAGACAA---------------------------------------------------------- | 1 | novel | |||
| seed | ----AGCACAC--------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| --TCAGCACACTGGTGATGGC----------------------------------------------------------------------------------------------- | 19 | - | - | 1 | 6 | |
| ----------------------------------------------------------------------------------------------TACTCAAAGCCAGGCTACCT-- | 20 | - | 2 | - | 1 | |
| -----------------------------------------TGTGTGTTCTGAGACAAG--------------------------------------------------------- | 18 | - | - | - | 2 | |
| -----------------------------------------TGTGTGTTCTGAGACAAGG-------------------------------------------------------- | 19 | - | - | - | 2 | |
| --TCAGCACACTGGTGATGGCA---------------------------------------------------------------------------------------------- | 20 | - | - | - | 2 | |
| -------------------------------------------------------------------------------------------------TCAAAGCCAGGCTACCTTT | 19 | - | - | - | 2 | |
| --------------------------------------------------TGAGACAAGGCCAGCCATA----------------------------------------------- | 19 | - | - | - | 1 | |
| ---CAGCACACTGGTGATGGCAACA------------------------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| -----------------TGGCAACAGGACTGACTGTGGGAA--------------------------------------------------------------------------- | 24 | - | - | - | 1 | |
| -----------------TGGCAACAGGACTGACTGTG------------------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| rat | ggTCAGCACACTGGTGATGGCAacaggactgactgtgggaaTGTGTGTTCTGAGACAAGGccagccatatgtccctgtgccccggtcatctgtcTACTCAAAGCCAGGCTACCTTT | |||||
| ******************************************************************************************************************** | ||||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||||
| rat | (((.(((...(((((..(((..(((((..((((((.(((.(((((((..((......))..))..))))).........))))))))))))))....)))..)))))))))))... | 0.450 -34.40 | ||||
| rat | chromosome:1:129025773:129025888:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock7921 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.30/0.52 | 18/26/0.42 | 0.0 0.3 1.5 2.3 1.5 0.0 | 0.0 0.7 2.0 3.3 1.5 0.0 | 1 3 2 3 2 1 | 0 0 0 0 0 0 | 1 1 2 2 1 1 | 0 0 0 0 0 0 | 16 26 31 33 19 12 | 16 9 1 -3 11 19 | 5arm 5arm 5arm 3arm 3arm 3arm | 1 1 1 2 2 2 | nd nd nd nd nd nd | 0.39 0.35 0.20 0.36 0.25 0.32 | 4 4 3 6 4 4 | 12 | 3 | -4 | -2 |
| reads | miRBase family seed | ||||
| seed | ---------------------------UACAGGA-------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------CAUAAGG------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------GUCAUAU------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------AGAUAGA----------------------------- | 1 | novel | ||
| seed | --------------------------------GAUGUCA--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------UGGUAGG-------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------GAUGUAG---------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------UUGGUAG--------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------GGUCAAA--------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------GAAGAUG------------------------------------- | 1 | novel | ||
| seed | ----------------------------ACAGGAU------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------ATTGGTAGGTCAAATGAAGA--------------------------------------- | 20 | - | - | 1 | |
| -------------------------------GGATGTCATATTGAATGAG---------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------------------------------------------------TAGATAGATGGTGACCTGGGAGTGG------------ | 25 | - | - | 1 | |
| ----------------------------------TGTCATATTGAATGAGCTAC------------------------------------------------------------------ | 20 | 1 | - | - | |
| --------------------------------------------------------------TTGGTAGGTCAAATGAAGATGTAGA--------------------------------- | 25 | - | - | 1 | |
| ---------------------------------------------------------------------------TGAAGATGTAGATAGATGGTGACCTG------------------- | 26 | - | - | 1 | |
| ------------------------------------------------------------------------------AGATGTAGATAGATGGTGAC---------------------- | 20 | - | - | 1 | |
| ----------------TCATAAGGGATTACAGGATGTCA--------------------------------------------------------------------------------- | 23 | - | - | 1 | |
| ---------------------------TACAGGATGTCATATTGAA-------------------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------TTACAGGATGTCATATTGAA-------------------------------------------------------------------------- | 20 | - | - | 1 | |
| --------------------------TTACAGGATGTCATATTGA--------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------------------AGGTCAAATGAAGATGTA----------------------------------- | 18 | - | 1 | - | |
| rat | aagtacaaatgacctcTCATAAGGGATTACAGGATGTCATATTGAATGAGCTACctaagatATTGGTAGGTCAAATGAAGATGTAGATAGATGGTGACCTGGGAGTGGggacaggggact | ||||
| ************************************************************************************************************************ | |||||
| rat | .(((.....((.((((((....(((.((((....(((((((((...(((.(((((.........))))).)))......))))).))))....)))))))..))).)))..))....))) | 0.440 -30.40 | |||
| rat | chromosome:3:76930611:76930730:1 | intergenic |
sblock7932 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.62 | 18/25/0.35 | 0.0 0.0 3.8 0.0 0.0 0.0 0.0 | 0.0 0.0 2.2 0.0 0.0 0.0 2.8 | 2 11 11 1 1 1 4 | 0 0 0 0 0 0 0 | 1 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 7 14 20 32 22 10 0 | 21 15 -8 0 10 16 27 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 1 1 1 2 2 2 2 | nd nd nd nd nd nd nd | 0.40 0.37 0.26 0.42 0.26 0.36 0.32 | 4 4 2 8 4 4 3 | 34 | 2 | 5 | 12 |
| reads | miRBase family seed | |||
| seed | ---------------GUUGCUA------------------------------------------------------------------------------------ | 11 | novel | |
| seed | --------------------------GAGUAGA------------------------------------------------------------------------- | 5 | novel | |
| seed | -----------------------------------------------------------------------------------CAGGCAG---------------- | 4 | novel | |
| seed | ---------------------AGAAUGA------------------------------------------------------------------------------ | 4 | novel | |
| seed | -------------------------------------CACCUCA-------------------------------------------------------------- | 2 | novel | |
| seed | --------GCCAAGU------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------GGAACAC------------------------------------------- | 1 | novel | |
| seed | -----------------------------------UGCACCU---------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------CAGGUCA--------------------------------- | 1 | novel | |
| seed | --------------UGUUGCU------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------AGAGAAA--------------------------- | 1 | novel | |
| seed | ---------------------------AGUAGAU------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| --------------TGTTGCTAGAATGAGTAGA------------------------------------------------------------------------- | 19 | - | 11 | |
| -------------------------TGAGTAGATTTGCACCTCA-------------------------------------------------------------- | 19 | - | 5 | |
| --------------------TAGAATGAGTAGATTTGCACCTCA-------------------------------------------------------------- | 24 | - | 4 | |
| ----------------------------------------------------------------------------------TCAGGCAGAGACAGAGCTGGGGAG | 24 | - | 2 | |
| -------AGCCAAGTGTTGCTAGAATG------------------------------------------------------------------------------- | 20 | - | 2 | |
| ------------------------------------GCACCTCATCCCACCAAGAG-------------------------------------------------- | 20 | - | 2 | |
| -----------------------------------------------------------------ACAGGTCAGAGAAATGCTC---------------------- | 19 | - | 1 | |
| ----------------------------------------------------------------------------------TCAGGCAGAGACAGAGCT------ | 18 | - | 1 | |
| ----------------------------------TTGCACCTCATCCCACCAAGAG-------------------------------------------------- | 22 | - | 1 | |
| ----------------------------------------------------------------------------------TCAGGCAGAGACAGAGCTG----- | 19 | - | 1 | |
| -------------GTGTTGCTAGAATGAGTAGA------------------------------------------------------------------------- | 20 | - | 1 | |
| --------------------------GAGTAGATTTGCACCTCATCCCACC------------------------------------------------------- | 25 | - | 1 | |
| -------------------------------------------------------GGGAACACAAACAGGTCAG-------------------------------- | 19 | 1 | - | |
| -----------------------------------------------------------------------CAGAGAAATGCTCAGGCAGAGACAG---------- | 25 | - | 1 | |
| rat | gcccggaagccaagTGTTGCTAGAATGAGTAGATTTGCACCTCAtcccaccaagagggaacacaaacaggtcagagaaatgctcaggcagagacagagctggggag | |||
| ********************************************************************************************************** | ||||
| rat | .(((...(((...((.(((((....((((((..((((.((((..((((.......))))........))))))))....)))))))))))..))...))).))).. | 0.960 -28.40 | ||
| rat | chromosome:3:76932995:76933100:1 | intergenic |
sblock8306 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.865 | no | no | 0.45/0.75 | 18/23/0.50 | 2.0 0.0 0.0 0.0 0.0 0.5 | 0.3 0.0 0.0 0.0 0.0 0.0 | 3 2 1 1 1 2 | 0 0 0 0 0 0 | 1 2 1 1 1 2 | 0 0 0 0 0 0 | 0 11 32 40 48 18 | 26 17 0 -8 -16 6 | 5arm 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 2 2 | nd nd nd nd nd nd | 0.39 0.41 0.28 0.56 0.67 0.16 | 2 3 2 7 7 2 | 10 | 5 | -18 | -21 |
| reads | miRBase family seed | ||||||
| seed | -AGACUGC--------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ------------CCUCUAA---------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------------------------CGGCUUC----------------------------- | 1 | novel | ||||
| seed | -------CGCUACC--------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------CAGCCAC----------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------GGAGGAC------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------CCGGCUU------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------CACACAG--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| -----------ACCTCTAAAGGAATCAGGTGCT-------------------------------------------------------------------- | 22 | - | 1 | - | 1 | - | |
| CAGACTGCGCTACCTCTAAAGGA------------------------------------------------------------------------------ | 23 | - | - | - | 2 | - | |
| --------------------------------TGGAGGACGCAGCCACAC--------------------------------------------------- | 18 | - | - | - | - | 1 | |
| ----------------------------------------------------------------CCGGCTTCTCCGTCCCTGC------------------ | 19 | 1 | - | - | - | - | |
| ---------------------------------------------------------------CCCGGCTTCTCCGTCCCTGC------------------ | 20 | - | - | 1 | - | - | |
| ------------------------------------------------ACACACAGAGTGGGACCC----------------------------------- | 18 | - | - | - | - | 1 | |
| ----------------------------------------GCAGCCACACACACAGAG------------------------------------------- | 18 | - | - | 1 | - | - | |
| ------GCGCTACCTCTAAAGGAA----------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| rat | CAGACTGCGCTACCTCTAAAGGAATCAGGTGCTGGAGGACGCAGCCACACACACAGAGTGGGACCCGGCTTCTCCGTCCCTGCtgctggaatatgcacgtg | ||||||
| ***************************************************************************************************** | |||||||
| rat | ...((((((.((..((((..((...((((.((.((((((.((..((.(((.......))))).....)))))))))).))))))..)))).)))))).)). | 0.530 -27.50 | |||||
| rat | chromosome:3:161174387:161174487:1 | intergenic |
novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (161 loci)
block40994 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.53/0.53 | 19/19/0.00 | 1.5 | 1.5 | 2 | 0 | 2 | 0 | 19 | -17 | 3arm_loop | 1 | nd | 0.37 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------GACUUCC------------------------------ | 1 | novel | |
| seed | -----------------------------------------GGAGACU--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S2 | |||
| -------------------------------------------AGACTTCCAGCTGAACCAC------------------- | 19 | 1 | - | |
| ----------------------------------------AGGAGACTTCCAGCTGAAC---------------------- | 19 | - | 1 | |
| rat | cagcccgggaacgaggatgggccagcccaggacagataaaAGGAGACTTCCAGCTGAACCACttcctccctaggacaactg | |||
| ********************************************************************************* | ||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000036872 ENSRNOG00000009972 Rara | |||
| rat | ...((..((...((((((((..((((...(((........((....))))).))))..)))..)))))))..))....... | 0.740 -25.60 | ||
| rat | chromosome:10:87739263:87739343:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000008659|ENSRNOG00000009972 ## Opposite_strand|Intronic_coding|ENSRNOT00000036872|ENSRNOG00000009972 ## ENSRNOG00000009972|protein_coding|Rara|retinoic acid receptor, alpha [Source:RefSeq_peptide;Acc:NP_113716] |
block113011 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.37/0.39 | 18/23/0.33 | 4.0 | 1.0 | 3 | 0 | 3 | 0 | 7 | -2 | 5arm_loop | 5 | nd | 0.43 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------UUUCCAA------------------------------------------ | 2 | novel | ||
| seed | --------AAAACUU------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T4S2 | |||
| -------CAAAACTTTTCCAAAAGGGGGAA--------------------------------- | 23 | - | 1 | - | |
| -------------TTTTCCAAAAGGGGGAAA-------------------------------- | 18 | - | - | 1 | |
| -------------TTTTCCAAAAGGGGGAAAA------------------------------- | 19 | 1 | - | - | |
| rat | tgctaaaCAAAACTTTTCCAAAAGGGGGAAAAgatttttctggaacagtcatgttgttagtaa | ||||
| *************************************************************** | |||||
| rat | (((((((((..(((.((((....((..(((....)))..)))))).)))..))))..))))). | 0.940 -13.90 | |||
| rat | chromosome:11:18488661:18488723:-1 | intergenic |
block140099 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.274 | no | no | 0.58/0.67 | 18/20/0.17 | 1.3 0.0 0.0 | 1.0 0.0 0.0 | 3 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 13 17 | 5 0 -3 | 5arm 5arm 5arm_loop | 1 1 1 | nd nd nd | 0.47 0.42 0.50 | 4 4 4 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------CCGGAUC-------------------------------------------------- | 2 | novel | |
| seed | --------------UCAGCAG--------------------------------------------- | 2 | novel | |
| seed | -----CCAUCCG------------------------------------------------------ | 1 | novel | |
| seed | ------------------CAGGACC----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| --------TCCGGATCAGCAGGACCAC--------------------------------------- | 19 | 2 | - | |
| -------------ATCAGCAGGACCACGGGAA---------------------------------- | 19 | 2 | - | |
| ----ACCATCCGGATCAGCAGGAC------------------------------------------ | 20 | 1 | - | |
| -----------------GCAGGACCACGGGAAGCA------------------------------- | 18 | - | 1 | |
| rat | cgggACCATCCGGATCAGCAGGACCACGGGAAGCAtattcttttttcctctttctttctatctccc | |||
| ****************************************************************** | ||||
| rat | .((((......(((..((.((((....(((((.....)))))...)))))).))).......)))) | 0.760 -11.72 | ||
| rat | chromosome:11:84748724:84748789:-1 | intergenic |
block153318 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.836 | no | no | 0.63/0.78 | 18/26/0.11 | 0.0 3.4 | 0.0 1.9 | 2 7 | 0 0 | 2 4 | 0 0 | 10 13 | 7 -9 | 5arm 5arm_loop | 1 1 | nd nd | 0.39 0.46 | 4 5 | 9 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------CCUACCG--------------------------------------------------------------------- | 3 | novel | |||||
| seed | --------------------------CCGGCUG----------------------------------------------------------------- | 3 | novel | |||||
| seed | -----------CCGCCAG-------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------CCAGGGA----------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -------------------------ACCGGCTGCATCTCCTCTC------------------------------------------------------ | 19 | - | - | - | - | 2 | 1 | |
| ---------------------GCCTACCGGCTGCATCTCC---------------------------------------------------------- | 19 | - | - | 1 | 1 | - | - | |
| ----------GCCGCCAGGGAGCCTACC---------------------------------------------------------------------- | 18 | 1 | 1 | - | - | - | - | |
| ---------------------GCCTACCGGCTGCATCTCCTCTC------------------------------------------------------ | 23 | - | - | - | 1 | - | - | |
| -------------GCCAGGGAGCCTACCGGCTGCATCTC----------------------------------------------------------- | 26 | - | - | - | 1 | - | - | |
| rat | cggtgctttcGCCGCCAGGGAGCCTACCGGCTGCATCTCCTCTCgtcttccactgcacccggcgtttcccgacctagcgaccccggactcggtgccgc | |||||||
| ************************************************************************************************** | ||||||||
| rat | (((..((((((.(((..(((((....((((.((((..................)))).))))...)))))......)))....))))...))..))). | 0.460 -28.27 | ||||||
| rat | chromosome:11:32045038:32045135:1 | intergenic ## {SimpF: oe = 1.00 1 CpG} |
block175302 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.402 | no | no | 0.42/0.50 | 18/19/0.00 | 2.0 | 2.7 | 3 | 0 | 2 | 0 | 26 | -7 | 5arm_loop | 1 | nd | 0.44 | 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------CACCCAA---------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------GGCACCC------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------CCCAAGA-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| --------------------------TGGCACCCAAGAAATGAG-------------------------------------------------- | 18 | - | 1 | |
| ------------------------------ACCCAAGAAATGAGACTAC--------------------------------------------- | 19 | - | 1 | |
| ----------------------------GCACCCAAGAAATGAGACT----------------------------------------------- | 19 | 1 | - | |
| rat | agtggtgagactaggactcttctggcTGGCACCCAAGAAATGAGACTACacatctctgctgccacctaagtttggataaagcctcccaaccgct | |||
| ********************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000002554 ENSRNOG00000001870 NP_001101796.1 | |||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000046214 ENSRNOG00000001870 NP_001101796.1 | |||
| rat | (((((((((.((.(((((.....((.(((((....(((.(((........))).)))..)))))))..)))))......)).)))...)))))) | 0.440 -21.70 | ||
| rat | chromosome:11:85494445:85494538:1 | Opposite_strand|Intronic_coding|ENSRNOT00000046214|ENSRNOG00000001870 ## ENSRNOG00000001870|protein_coding|NP_001101796.1|leucine-zipper-like transcriptional regulator, 1 [Source:RefSeq_peptide;Acc:NP_001101796] |
block191675 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.372 | no | no | 0.44/0.48 | 18/21/0.50 | 2.5 | 1.0 | 2 | 0 | 2 | 0 | 29 | -4 | 3arm | 1 | nd | 0.48 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------GGAUUAU--------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------CUUCAGG-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| --------------------------------------------------------AGGATTATGGGGAACATC----------------------------- | 18 | 1 | - | |
| ---------------------------------------------------GCTTCAGGATTATGGGGAACA------------------------------- | 21 | - | 1 | |
| rat | gcctagtaacggtgctctggctccatcttcgctgtctttccttgtttgttgGCTTCAGGATTATGGGGAACATCtggttttcgtggcggccaggggcttaggt | |||
| ******************************************************************************************************* | ||||
| rat | (((((.....(((.((((((((((((....(((....((((((((...(((....)))....)))))))).....)))....)))).)))))))))))))))) | 0.680 -28.90 | ||
| rat | chromosome:12:23689705:23689807:-1 | intergenic |
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