other hairpins
novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (161 loci)
block1470321 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.585 | no | no | 0.37/0.55 | 19/20/0.22 | 0.5 1.2 | 0.0 1.2 | 4 5 | 0 0 | 2 1 | 0 0 | 26 33 | 0 -9 | 5arm 5arm_loop | 1 1 | nd nd | 0.40 0.68 | 4 7 | 9 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------ACUAUAC--------------------------------------------------------- | 3 | novel | |
| seed | -------------------------------------AUACUGG------------------------------------------------------ | 2 | novel | |
| seed | ----------------------------ACGCCUA--------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------CACGCCU---------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------TACTATACTGGCATTCAGT---------------------------------------------- | 19 | - | 3 | |
| ------------------------------------TATACTGGCATTCAGTTCT------------------------------------------- | 19 | - | 2 | |
| ---------------------------CACGCCTACTATACTGGCA---------------------------------------------------- | 19 | - | 2 | |
| --------------------------GCACGCCTACTATACTGGCA---------------------------------------------------- | 20 | 1 | 1 | |
| rat | aacatactgtgtctactcccaacccaGCACGCCTACTATACTGGCATTCAGTTCTttgaaggtgggggctgctactggttcattctgatttcttctgt | |||
| ************************************************************************************************** | ||||
| rat | .(((......(((.......((((.((((.((((....((((..((..........))..)))).))))))))...))))......)))......))) | 0.440 -18.72 | ||
| rat | chromosome:3:76975149:76975246:1 | intergenic |
block1498790 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.361 | no | no | 0.26/0.32 | 18/19/0.00 | 2.2 | 2.0 | 4 | 0 | 3 | 0 | 22 | -4 | 5arm_loop_3arm | 2 | nd | 0.47 | 4 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------ACAUCUC----------------------------------------------------------- | 3 | novel | ||
| seed | -----------------------UCUACAU-------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| -------------------------TACATCTCGTTCAAATATT------------------------------------------------ | 19 | 1 | - | 1 | |
| ----------------------TTCTACATCTCGTTCAAAT--------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------TACATCTCGTTCAAATAT------------------------------------------------- | 18 | - | 1 | - | |
| rat | tctagggctaccatcctctgctTTCTACATCTCGTTCAAATATTttaggactcctgttaggagtaaggacaggatgggttttctatctgggc | ||||
| ******************************************************************************************** | |||||
| rat | ((((((....(((((((.((((((..(((....((((.((....)).))))...)))..)))))).....)))))))........)))))). | 0.710 -21.00 | |||
| rat | chromosome:3:140148780:140148871:1 | intergenic |
block1600330 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.719 | no | no | 0.41/0.42 | 19/22/0.50 | 1.5 | 0.0 | 2 | 0 | 1 | 0 | 28 | -19 | 3arm_loop | 1 | nd | 0.36 | 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------GACUGGU--------------------------------------- | 1 | novel |
| seed | ---------------------------------------AGAGACU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------AGACTGGTTTCATCTACTC---------------------------- | 19 | 1 | |
| --------------------------------------TAGAGACTGGTTTCATCTACTC---------------------------- | 22 | 1 | |
| rat | gagacatgacacacggcgtgtacctccaaggtgaaggcTAGAGACTGGTTTCATCTACTCcatgtgctgccaaagacctatatcgctc | ||
| **************************************************************************************** | |||
| rat | ..............((((.((((.....(((((((.(((((...)))))))))))).......))))))))................. | 0.500 -18.90 |
| rat | chromosome:4:164234309:164234396:-1 | intergenic |
block1766516 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.45/0.48 | 19/22/0.67 | 1.7 | 1.3 | 3 | 0 | 2 | 0 | 10 | -21 | 3arm | 1 | nd | 0.32 | 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------ACAUUCC-------------------------- | 2 | novel | |
| seed | ------------------------------------CCUAUUC--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------TCCTATTCTGCCAGAGTCT---------- | 19 | 1 | - | |
| ------------------------------GACATTCCTATTCTGCCAGAGT------------ | 22 | - | 1 | |
| ------------------------------GACATTCCTATTCTGCCAGAG------------- | 21 | - | 1 | |
| rat | accctgattggtgaaaggaacacagaaaagGACATTCCTATTCTGCCAGAGTCTtcttgaaggg | |||
| **************************************************************** | ||||
| rat | .((((....((.((..((....(((((.(((.....))).)))))))....)).))....)))) | 0.930 -15.60 | ||
| rat | chromosome:5:114518775:114518838:-1 | intergenic |
block1889592 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.571 | no | no | 0.32/0.55 | 19/26/0.44 | 6.1 | 8.4 | 9 | 0 | 2 | 0 | 21 | -17 | 3arm_loop | 1 | nd | 0.38 | 4 | 9 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------GGAUGCU--------------------------------------------- | 2 | novel | |
| seed | ------------------------------GCUUUUU----------------------------------------- | 2 | novel | |
| seed | -------------------------UGGAUGC---------------------------------------------- | 1 | novel | |
| seed | --------------------------------------UCUAGUG--------------------------------- | 1 | novel | |
| seed | ------------------------------------UUUCUAG----------------------------------- | 1 | novel | |
| seed | -----------------------CUUGGAU------------------------------------------------ | 1 | novel | |
| seed | ----------------------------AUGCUUU------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------TTGGATGCTTTTTTTCTAGTG--------------------------------- | 21 | - | 1 | |
| -----------------------------TGCTTTTTTTCTAGTGGGCGTG--------------------------- | 22 | - | 1 | |
| -----------------------------------TTTTCTAGTGGGCGTGCAG------------------------ | 19 | - | 1 | |
| ---------------------------GATGCTTTTTTTCTAGTGG-------------------------------- | 19 | 1 | - | |
| -------------------------TGGATGCTTTTTTTCTAGTGG-------------------------------- | 21 | - | 1 | |
| ----------------------TCTTGGATGCTTTTTTTCT------------------------------------- | 19 | - | 1 | |
| -----------------------------TGCTTTTTTTCTAGTGGGCGTGCAG------------------------ | 25 | - | 1 | |
| -------------------------------------TTCTAGTGGGCGTGCAGCAT--------------------- | 20 | 1 | - | |
| -------------------------TGGATGCTTTTTTTCTAGTGGGCGTG--------------------------- | 26 | - | 1 | |
| rat | agcggccatagctgaaccggttTCTTGGATGCTTTTTTTCTAGTGGGCGTGCAGCATgcaccgggatgtcttgtttgc | |||
| ****************************************************************************** | ||||
| >>>>>>>>>>>>>>>......................................................................... | ENSRNOT00000030881 ENSRNOG00000026676 LOC500567 | |||
| rat | .(((..((..((....(((((...(((.(((((..((....))..))))).))).....)))))...))..))..))) | 0.930 -20.60 | ||
| rat | chromosome:5:154400784:154400861:1 | intergenic |
novel_lenNOK_5varHIGH_loopOverlap (157 loci)
block7702 [novel_lenNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.47/0.53 | 19/19/0.00 | 1.5 | 1.5 | 2 | 0 | 1 | 0 | 29 | -2 | 5arm_loop | 3 | 16 | 0.26 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------GUCUACU------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------------------------UACUACU---------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------------------CTACTACTAGGGACTGACC----------------------------------------------------------------- | 19 | 1 | |
| -----------------------------TGTCTACTACTAGGGACTG-------------------------------------------------------------------- | 19 | 1 | |
| rat | ttccaggaaggggagcttacccagcagggTGTCTACTACTAGGGACTGACCcttcctgtctctgcagttcttgagccactgcctgctggtgaccttggctagccaccaccctgggg | ||
| ******************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048977 ENSRNOG00000031686 LOC360504 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000052292 ENSRNOG00000031154 LOC287167 | ||
| rat | .((((((..((((((((...(((((((((((.((...(((((((((.((....))..))))))..))).....)).)))..)))))))).......))))..)).))..)))))). | 0.770 -42.80 |
| rat | chromosome:10:15558895:15559010:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000048977|ENSRNOG00000031686 ## Same_strand|Intronic_coding|ENSRNOT00000052292|ENSRNOG00000031154 ## ENSRNOG00000031686|protein_coding|LOC360504|hemoglobin alpha 2 chain [Source:RefSeq_peptide;Acc:NP_001007723] ## ENSRNOG00000031154|protein_coding|LOC287167|globin, alpha [Source:RefSeq_peptide;Acc:NP_001013875] |
block19295 [novel_lenNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.247 | no | no | 0.47/0.58 | 19/21/0.40 | 3.0 0.0 | 3.7 0.5 | 3 2 | 0 0 | 3 1 | 0 0 | 2 16 | 5 -2 | 5arm 5arm_loop | 1 1 | nd nd | 0.21 0.42 | 3 4 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------CCACAAA---------------------------------------------------- | 2 | novel | |||
| seed | ------CGACACA--------------------------------------------------------------- | 1 | novel | |||
| seed | ---CAGCGAC------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------CACAGCA------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T5S1 | T5S2 | |||
| -----GCGACACAGCAACCACAAA---------------------------------------------------- | 19 | 1 | - | - | - | |
| --ACAGCGACACAGCAACCAC------------------------------------------------------- | 19 | - | - | - | 1 | |
| --------ACACAGCAACCACAAAACCCA----------------------------------------------- | 21 | - | 1 | - | - | |
| ----------------ACCACAAAACCCAGAACCA----------------------------------------- | 19 | - | - | 1 | - | |
| ----------------ACCACAAAACCCAGAACCAC---------------------------------------- | 20 | - | - | 1 | - | |
| rat | ctACAGCGACACAGCAACCACAAAACCCAGAACCACtgcaggctgcacttgtggtttgttgacagggacgcttggg | |||||
| **************************************************************************** | ||||||
| rat | (((.((((...((((((((((((....(((..((......)))))...)))))))).)))).......))))))). | 0.790 -19.50 | ||||
| rat | chromosome:10:43703470:43703545:-1 | intergenic |
block43403 [novel_lenNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.358 | no | no | 0.56/0.58 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 2 | 0 | 13 | -3 | 3arm | 1 | 17 | 0.28 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------GGAGACA----------------------- | 1 | novel | |
| seed | -------------------------------------GGCGGAG-------------------------- | 1 | miR-25* | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ---------------------------------------CGGAGACAAGCGATACTG------------- | 18 | 1 | - | |
| ------------------------------------AGGCGGAGACAAGCGATAC--------------- | 19 | - | 1 | |
| rat | ggagcctccccttggctgatcccacttgcctcttgtAGGCGGAGACAAGCGATACTGtgaagcaggcttc | |||
| ********************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055179 ENSRNOG00000022071 LOC685269 | |||
| rat | (((((((...(((.((..(((...((((.(((.((....))))).)))).)))...)).))).))))))) | 0.850 -21.30 | ||
| rat | chromosome:10:91571226:91571295:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000036112|ENSRNOG00000022071 ## Same_strand|Boundary_coding|ENSRNOT00000055179|ENSRNOG00000022071 ## ENSRNOG00000022071|protein_coding|LOC685269| |
block58387 [novel_lenNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.824 | no | no | 0.44/0.58 | 18/21/0.17 | 1.5 0.0 | 1.2 0.0 | 4 2 | 0 0 | 3 2 | 0 0 | 9 4 | -2 7 | 3arm 3arm | 1 1 | nd nd | 0.22 0.26 | 2 2 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------UUCUCUC-------------------- | 2 | novel | |||
| seed | --------------------------------------------------------UCAGAAA--------------- | 2 | novel | |||
| seed | -------------------------------------------------UGUUCUC---------------------- | 1 | novel | |||
| seed | -----------------------------------------------CAUGUUC------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S1 | T3S2 | |||
| -------------------------------------------------------CTCAGAAAGCCCTTACCCC---- | 19 | 1 | - | 1 | - | |
| --------------------------------------------------GTTCTCTCAGAAAGCCCTT--------- | 19 | - | - | 2 | - | |
| ------------------------------------------------ATGTTCTCTCAGAAAGCC------------ | 18 | - | - | - | 1 | |
| ----------------------------------------------TCATGTTCTCTCAGAAAGCCC----------- | 21 | - | 1 | - | - | |
| rat | gccgcgtgcggatgccctcccttgaccctgaacgttacctcttattTCATGTTCTCTCAGAAAGCCCTTACCCCggtt | |||||
| ****************************************************************************** | ||||||
| rat | ((((.(((.((..((..((...(((....((((((.............))))))..)))))..)))).)))..)))). | 0.750 -11.32 | ||||
| rat | chromosome:10:11009717:11009794:1 | intergenic |
block75382 [novel_lenNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.084 | no | no | 0.65/0.67 | 18/20/0.50 | 1.5 | 0.5 | 2 | 0 | 1 | 0 | 34 | -2 | 5arm_loop | 2 | nd | 0.25 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------GGGCCAU---------------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------CCAUGGA------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ----------------------------------TGGGCCATGGACTCTGGGAG---------------------------------------------------------------- | 20 | 1 | |
| -------------------------------------GCCATGGACTCTGGGAGC--------------------------------------------------------------- | 18 | 1 | |
| rat | gagatggtcagacttcatgagtaaagacaaagacTGGGCCATGGACTCTGGGAGCgatggagaagatcttggtgtttagagctcagtctgttgcagggtgggatgttgtgtttatttt | ||
| ********************************************************************************************************************** | |||
| rat | (((((((.(((((.((.........(((..(((((((((..(((((.((((((.............)))))).)))))..)))))))))))).........)).))).)).))))))) | 0.510 -30.09 |
| rat | chromosome:10:49071645:49071762:1 | intergenic |
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