miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_bulgeHIGH (143 loci)

block2011261 [novel_lenNOK_Multihit_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.046	no	no	0.58/0.61	18/24/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	24 20	5 15	3arm 3arm	38 41	nd nd	0.29 0.39	4 4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CUGGCAU----------------------------------------	1	novel
seed	---------------------------------------------------------------------CUUCCGU------------------------------	1	novel
		len	cloning frequencies
			T4S1
	--------------------------------------------------------------------CCTTCCGTGTTCCTACCC--------------------	18	1
	----------------------------------------------------------ACTGGCATGGCCTTCCGTGTTCCT------------------------	24	1
rat	atccactggtgctgccaaggctgtgagcaaggtcatcccagagctgaatgggaagctcACTGGCATGGCCTTCCGTGTTCCTACCCccaatgtatctgttgtggat
	**********************************************************************************************************
rat	((((((.(((((......((.((.((((((((((((.((((((((........)))))..))).)))))))....))))).)).)).....)))))....))))))	0.770 -37.20

rat

chromosome:6:37823621:37823726:1

intergenic

block2128665 [novel_lenNOK_Multihit_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.120	no	no	0.58/0.61	18/24/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	0 10	10 6	5arm 5arm	38 41	nd nd	0.29 0.39	4 6	2	1	na	na

		reads	miRBase family seed
seed	-----------CUUCCGU--------------------------------------------------------------	1	novel
seed	-CUGGCAU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S1
	ACTGGCATGGCCTTCCGTGTTCCT--------------------------------------------------------	24	1
	----------CCTTCCGTGTTCCTACCC----------------------------------------------------	18	1
rat	ACTGGCATGGCCTTCCGTGTTCCTACCCccaatgtatccattgtggatctgacatgacacctggagaaacctgccaagta
	********************************************************************************
rat	(((((((.((..(((((((((......(((((((....))))).)).........)))))..))))...))))))).)).	0.940 -20.76

rat

chromosome:7:75589777:75589856:-1

intergenic

novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH (142 loci)

block187708 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	16	1	5arm	23	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------CACACCC------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------ACACACCCTGCATCCCAC--------------------------------------------	18	1
rat	gtagttgttggtgattACACACCCTGCATCCCACagccttctatgtcttcttgctgggagtcagtcatcatggctgca
	******************************************************************************
rat	(((((((.((((((((..((.(((.(((....(((........))).....))).))).)).))))))))))))))).	1.000 -25.10

rat

chromosome:12:19042755:19042832:-1

intergenic

block187734 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	16	1	5arm	23	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------CACACCC------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------ACACACCCTGCATCCCAC--------------------------------------------	18	1
rat	gtagttgttggtgattACACACCCTGCATCCCACagccttccatgtcttcttgctgggagtcagtcatcatggctgca
	******************************************************************************
rat	(((((((.((((((((..((.(((.(((....(((........))).....))).))).)).))))))))))))))).	1.000 -25.10

rat

chromosome:12:19082081:19082158:-1

intergenic

block187924 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	16	1	5arm	23	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------CACACCC------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------ACACACCCTGCATCCCAC--------------------------------------------	18	1
rat	gtagttgttggtgattACACACCCTGCATCCCACagccttctatgtcttcttgctgggagtcagtcatcatggctgca
	******************************************************************************
rat	(((((((.((((((((..((.(((.(((....(((........))).....))).))).)).))))))))))))))).	1.000 -25.10

rat

chromosome:12:19514745:19514822:-1

intergenic

block218078 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	16	1	5arm	23	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------CACACCC------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------ACACACCCTGCATCCCAC--------------------------------------------	18	1
rat	gtagttgttggtgattACACACCCTGCATCCCACagccttccatgtcttcttgctgggagtcagtcatcatggctgca
	******************************************************************************
rat	(((((((.((((((((..((.(((.(((....(((........))).....))).))).)).))))))))))))))).	1.000 -25.10

rat

chromosome:12:19145394:19145471:1

intergenic

block281270 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.72/0.72	18/18/0.00	0.0	0.0	1	0	1	0	9	15	5arm	32	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	----------CAGCCUG------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	---------CCAGCCTGCTGCAGCCTC--------------------------------------------------------------------------	18	1
rat	agcgtagctCCAGCCTGCTGCAGCCTCctcacctgctgcagcctccttacctgctgcagcctcctcacctgctgcagctagcctcctcacctgctgcagct
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	ENSRNOT00000038264 ENSRNOG00000002393 Eprs
	---------------------------------------------------------------------------------------------------------------	ENSRNOT00000003252 ENSRNOG00000002393 Eprs
rat	((((((((....((..((((((((..........((((((((..........))))))))..........))))))))..))..........))))).)))	0.670 -38.79

rat

chromosome:13:101405292:101405392:-1

Opposite_strand|Intronic_coding|ENSRNOT00000038264|ENSRNOG00000002393 ## ENSRNOG00000002393|protein_coding|Eprs|glutamyl-prolyl-tRNA synthetase [Source:RefSeq_peptide;Acc:NP_001019409] ## {Repeats: trf 134 146 0 class=trf,trf 47 56 0 class=trf}

block400762 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	14	4	5arm	17	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	---------------GGGUAAC----------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	--------------GGGGTAACAAATGGTACAG-----------------------------------------------	19	1
rat	agtcctgtttcacaGGGGTAACAAATGGTACAGgcctagagcttgcaggtccctttgtgttatggtgtagaagcaggaca
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000046075 ENSRNOG00000038676 LOC367617
rat	.(((((((((((((...((((((...((....(((((.........)))))))....))))))..))).)))))))))).	0.980 -28.60

rat

chromosome:14:49786599:49786678:1

block424263 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	16	7	3arm	14	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------UGUGCCA---------------------------	1	novel
		len	cloning frequencies
			T5S1
	------------------------------------------------------------CTGTGCCATTTTCCTTTTA----------------	19	1
rat	gagagcaggtgcccattcaaggcttttgttactgcgtcaggtccttcctctatgactttgCTGTGCCATTTTCCTTTTAttggtattttttctct
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000005834 ENSRNOG00000004161 Mtif2
rat	(((((.(((((((.((..((((....((.(((.(((..(((((..........)))))))).))).))....))))..)).))))))).))))).	1.000 -24.80

rat

chromosome:14:110540792:110540886:1

Same_strand|Intronic_non-coding|ENSRNOT00000005834|ENSRNOG00000004161 ## Same_strand|Boundary_non-coding|ENSRNOT00000056759|ENSRNOG00000004161 ## ENSRNOG00000004161|protein_coding|Mtif2|mitochondrial translational initiation factor 2 [Source:RefSeq_peptide;Acc:NP_001004254] ## {Repeats: trf 1241 1260 0 class=trf}

block434297 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	6	7	5arm	17	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-------UGUGUAU-----------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	------TTGTGTATCATCCCAGGG-------------------------------------	18	1
rat	gggaagTTGTGTATCATCCCAGGGgcaccagtagctgttgtcccaggagggctcacttccc
	*************************************************************
rat	((((((.((.((....(((..((((((.(((...))).)))))).)))..)).))))))))	1.000 -26.80