miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH (142 loci)

block1087173 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.56/0.56	18/18/0.00	0.0	0.0	3	0	1	0	25	13	5arm	14	nd	0.50	5	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------CACUGUC----------------------------------------------------	1	novel
seed	--------------------------CACUGUC---------------------------------------------------------------------------------------	1	novel
seed	------------------------------------------------------------------------------------------------CACUGUC-----------------	1	novel
		len	cloning frequencies
			T4S2
	-------------------------ACACTGTCCACCTGACAG-----------------------------------------------------------------------------	18	1
	-----------------------------------------------------------------------------------------------ACACTGTCCACCTGACAG-------	18	1
	------------------------------------------------------------ACACTGTCCACCTGACAG------------------------------------------	18	1
rat	cctgacagagcaggtcagcagatacACACTGTCCACCTGACAGagcaggccgacagatacACACTGTCCACCTGACAGagcaggccgacagatacACACTGTCCACCTGACAGagcaggt
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000000365 ENSRNOG00000000327 Hace1_predicted
rat	((((......(((((..((((.......(((((..((((......((((..(((((.......)))))..))))......))))..))))).......))))..)))))......)))).	0.430 -43.54

rat

chromosome:20:49868910:49869029:-1

Opposite_strand|Intronic_coding|ENSRNOT00000000365|ENSRNOG00000000327 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000000362|ENSRNOG00000000327 ## ENSRNOG00000000327|protein_coding|Hace1_predicted|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 [Source:RefSeq_peptide;Acc:NP_001102009] ## {Repeats: trf 417 435 0 class=trf}

block1087174 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.56/0.56	18/18/0.00	0.0	0.0	3	0	1	0	25	13	5arm	14	nd	0.50	5	3	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------CACUGUC---------------------------------------------------	1	novel
seed	--------------------------CACUGUC---------------------------------------------------------------------------------------	1	novel
seed	-------------------------------------------------------------------------------------------------CACUGUC----------------	1	novel
		len	cloning frequencies
			T4S2
	-------------------------------------------------------------ACACTGTCCACCTGACAG-----------------------------------------	18	1
	------------------------------------------------------------------------------------------------ACACTGTCCACCTGACAG------	18	1
	-------------------------ACACTGTCCACCTGACAG-----------------------------------------------------------------------------	18	1
rat	cctgacagagcaggtcagcagatacACACTGTCCACCTGACAGagcaggccgacagaatacACACTGTCCACCTGACAGagcaggtcagcagatacACACTGTCCACCTGACAGagcagg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000000365 ENSRNOG00000000327 Hace1_predicted
rat	((((......(((((..((((.......((((..(((((......((((..(((((........)))))..))))......)))))..)))).......))))..)))))......))))	0.550 -42.34

rat

chromosome:20:49868981:49869100:-1

block1087175 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.56/0.56	18/18/0.00	0.0	0.0	3	0	1	0	25	13	5arm	14	nd	0.50	5	3	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------CACUGUC---------------------------------------------------	1	novel
seed	--------------------------CACUGUC---------------------------------------------------------------------------------------	1	novel
seed	-------------------------------------------------------------------------------------------------CACUGUC----------------	1	novel
		len	cloning frequencies
			T4S2
	-------------------------------------------------------------ACACTGTCCACCTGACAG-----------------------------------------	18	1
	------------------------------------------------------------------------------------------------ACACTGTCCACCTGACAG------	18	1
	-------------------------ACACTGTCCACCTGACAG-----------------------------------------------------------------------------	18	1
rat	cctgacagagcaggtcagcagatacACACTGTCCACCTGACAGagcaggccgacagaatacACACTGTCCACCTGACAGagcaggtcagcagatacACACTGTCCACCTGACAGagcagg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000000365 ENSRNOG00000000327 Hace1_predicted
rat	((((......(((((..((((.......((((..(((((......((((..(((((........)))))..))))......)))))..)))).......))))..)))))......))))	0.550 -42.34

rat

chromosome:20:49868981:49869100:-1

block1544911 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	29	0	3arm	15	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CCACAUG----------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----------------------------------------------------TCCACATGACTTAGATATC-----------------------------	19	1
rat	tagggattcttggtgaaagcttcgtggacatgtgtctttgcactgggatcttTCCACATGACTTAGATATCcttgccatgaggtcattaccagtcacctt
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000051405 ENSRNOG00000032252 LOC681850
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000047545 ENSRNOG00000032252 LOC681850
rat	.((((((...((((((..(((((((((.((.((((((...((.(((((....))).))))....))))))...)))))))))))..))))))))).))).	1.000 -34.90

rat

chromosome:4:57749403:57749502:-1

novel_Multihit_randfoldOK_nonpairedHIGH (141 loci)

block60374 [novel_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	20	13	5arm	34	nd	0.35	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------CUGGCCA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	--------------------ACTGGCCACTGTCAGAACCA------------------------------------------------------------	20	1
rat	acaaacggtaacagaaaggaACTGGCCACTGTCAGAACCAtctgcagtcatgttcagaacatgataaaggttgtgacactgggcttccgttacaagatga
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	ENSRNOT00000022050 ENSRNOG00000024635 Cramp1l_predicted
rat	.((....(((((.....(((...((((..(((((.((((.......(((((((.....)))))))...)))).)))))...))))))))))))....)).	0.920 -29.20

rat

chromosome:10:14247801:14247900:1

block211065 [novel_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	32	3	3arm	64	nd	0.36	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CCUGAGC----------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------------------------------------------------------TCCTGAGCAGCTCCTGAACTCC--------------------------------	22	1
rat	gttcctgagctcctgagcagctcctgagctcctgagctcgtgagcccctgagcagctactgagcTCCTGAGCAGCTCCTGAACTCCtgagctcctgagcagctcctgagctcctgagc
	**********************************************************************************************************************
rat	((((..((((((..((((.((((..((((((..(((.(((.((((..((.((.((((....)))).)).))..)))).))).)))..))))))..)))).))))..))))))..))))	1.000 -58.50

rat

chromosome:12:8609137:8609254:1

intergenic ## {Repeats: dust 8609329 8609351 0 class=dust,trf 18414 18436 0 class=trf,trf 18404 18426 0 class=trf}

block211069 [novel_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	5	28	3arm	64	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------CCUGAGC-------------------	1	novel
		len	cloning frequencies
			T3S2
	-----------------------------------------------------------------------------------------TCCTGAGCAGCTCCTGAACTCC-----	22	1
rat	gctcctgagctcctgagcagctcctgagcagctcctgagcagctcctgagctcctgagcagctcctgagctcctgagcagctcctgagcTCCTGAGCAGCTCCTGAACTCCtgagc
	********************************************************************************************************************
rat	((((..(((.((..((((.((((...((.(((((..((((.((((..((((((..(((...)))..))))))..)))).))))..))))).)))))).))))..)).)))..))))	0.930 -54.60

rat

chromosome:12:8609763:8609878:1

intergenic ## {Repeats: trf 17753 17775 0 class=trf,dust 8609670 8609692 0 class=dust,trf 17763 17785 0 class=trf}

block211082 [novel_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	10	9	3arm	64	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------CCUGAGC------------------------	1	novel
		len	cloning frequencies
			T3S2
	--------------------------------------------------------TCCTGAGCAGCTCCTGAACTCC----------	22	1
rat	gagcagctcctgagcagctcctgagcagctcctgagctcctgagcagctcttgagcTCCTGAGCAGCTCCTGAACTCCtgagcagctc
	****************************************************************************************
rat	((((.((((..((((((.....((((.((((..((((((..(((...)))..))))))..)))).)))))))..)))..)))).))))	0.970 -39.20

rat

chromosome:12:8612757:8612844:1

intergenic ## {Repeats: trf 14792 14814 0 class=trf,dust 8612791 8612813 0 class=dust,trf 14802 14824 0 class=trf}

block211086 [novel_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	9	21	3arm	64	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------CCUGAGC-----------------------	1	novel
		len	cloning frequencies
			T3S2
	----------------------------------------------------------------------------------TCCTGAGCAGCTCCTGAACTCC---------	22	1
rat	agctcctgagaagctcctgagctcctgagcagctcctgagcagctcctgagcagctcctgagctcctgagcagctcctgagcTCCTGAGCAGCTCCTGAACTCCtgagcagct
	*****************************************************************************************************************
rat	((((.((.((.((.((..(((((.((.((.(((((..((((.((((..((((.........))))..)))).))))..))))).)).)).)))))..)).)).)).)).))))	0.430 -48.80

rat

chromosome:12:8613436:8613548:1

intergenic ## {Repeats: dust 8613406 8613421 0 class=dust,trf 14087 14109 0 class=trf,trf 14097 14119 0 class=trf}

block211087 [novel_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	10	18	3arm	64	nd	0.41	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------CCUGAGC------------------------	1	novel
		len	cloning frequencies
			T3S2
	---------------------------------------------------------------------------TCCTGAGCAGCTCCTGAACTCC----------	22	1
rat	gagcagctcctgacctcctgagcagctcctgagcaactcctgagcagctcctgccctgctgagcagctcctgaacTCCTGAGCAGCTCCTGAACTCCtgagcagctc
	***********************************************************************************************************
rat	((((.((((..((..((..((((.((((..(((....((..((((.((((..((...)).)))).))))..)).)))..)))).))))..))..))..)))).))))	0.990 -40.30