miR-Intess: classification

other hairpins

novel_lenNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (135 loci)

novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH (130 loci)

block22238 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	19	19	5arm	22	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------CCUUGGU---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	-------------------TCCTTGGTTAAGTAGGAC-----------------------------------------------------------------------------------	18	1
rat	ggacatacaggtttacctgTCCTTGGTTAAGTAGGACttacaggtttacctgtccttgtaagtaggacttacaggtttacctgtccttggttaagtaggatttacaggtttacctgtcct
	************************************************************************************************************************
rat	((((....((((..((((((.((((.((((.((((....((((((..(((((((((.......)))))....))))..)))))).)))).)))).))))....))))))..)))))))).	0.850 -45.90

rat

chromosome:10:49371845:49371964:-1

intergenic ## {Repeats: trf 778 796 0 class=trf}

block22251 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	13	19	5arm	22	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--------------CCUUGGU----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	-------------TCCTTGGTTAAGTAGGAC------------------------------------------------------------------------------	18	1
rat	acaggtttacctgTCCTTGGTTAAGTAGGACttacaggtttacctgtccttgtaagtaggacttacaggtttacctgtccttgtaagtaggacttacaggtttacctgt
	*************************************************************************************************************
rat	((((((..((((((.((((.(((...(((((....((((..(((((((((.......)))))....))))..)))))))))..))).))))....))))))..))))))	0.710 -43.40

rat

chromosome:10:49373454:49373562:-1

intergenic ## {Repeats: trf 953 971 0 class=trf}

block136525 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	10	20	5arm	20	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-----------UCCGCAA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----------ATCCGCAAAGCCACCAAGT----------------------------------------------------------------------------	19	1
rat	gggtatgcacATCCGCAAAGCCACCAAGTatctgaaggatgtcactttaaagaagtaatgtgtgccattctggcggtataatggtggtgtctgtaggtgcgccca
	*********************************************************************************************************
rat	((((..((((....(((..(((((((..((((((.((((((.(((.(((......)))...))).))))))..))).))).)))))))...)))..)))))))).	0.990 -37.40

rat

chromosome:11:79500176:79500280:-1

intergenic

block159733 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.61/0.61	18/18/0.00	0.0	0.0	2	0	1	0	14	0	3arm	29	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------CCAAUCC------------------------	2	novel
		len	cloning frequencies
			T3S1
	-----------------------------------GCCAATCCCTGACCCTGA--------------	18	2
rat	ggcctgggcccaaggaggaagaaagatgggcctggGCCAATCCCTGACCCTGAagaggcctgggccc
	*******************************************************************
rat	((((..((((...((.((.((...(((.(((....))).))).))..)))).....))))..)))).	0.840 -31.00

rat

chromosome:11:48383876:48383942:1

intergenic ## {Repeats: trf 1242 1260 0 class=trf,trf 1189 1207 0 class=trf}

block159738 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.61/0.61	18/18/0.00	0.0	0.0	2	0	1	0	14	0	3arm	29	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------CCAAUCC------------------------	2	novel
		len	cloning frequencies
			T3S1
	-----------------------------------GCCAATCCCTGACCCTGA--------------	18	2
rat	ggcctgggcccaaggaggaagaaagatgggcctggGCCAATCCCTGACCCTGAagaggcctgggccc
	*******************************************************************
rat	((((..((((...((.((.((...(((.(((....))).))).))..)))).....))))..)))).	0.840 -31.00

rat

chromosome:11:48385687:48385753:1

intergenic ## {Repeats: trf 1396 1414 0 class=trf}

block159741 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.61/0.61	18/18/0.00	0.0	0.0	2	0	1	0	32	6	5arm	29	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------CCAAUCC------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T3S1
	--------------------------------GCCAATCCCTGACCCTGA--------------------------------------------------------------------	18	2
rat	ctgggcccaaggaggaagaaagatgggcctggGCCAATCCCTGACCCTGAagaggcctgggcctaaaggaacaactgatgtggtcctgggcctatccctaaccgttgaagaggcctgg
	**********************************************************************************************************************
rat	(((((((((((((((......((((((((..((((((((..((..(((....((((....))))..)))..))...))).))).))..)))))))))))..)).)))....)))))))	0.990 -49.50

rat

chromosome:11:48386872:48386989:1

intergenic ## {Repeats: trf 214 232 0 class=trf}

block220910 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	10	20	3arm	13	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------CCUGACC---------------------	1	novel
		len	cloning frequencies
			T3S2
	--------------------------------------------------------------------------ACCTGACCCCAGCTTTTCT----------	19	1
rat	acacaccacacataatgagccaggattccgggtggctatgtagttgaggccactgcctcaagtgtgcatgtcccACCTGACCCCAGCTTTTCTgtctgtgtgt
	*******************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------	ENSRNOT00000032250 ENSRNOG00000022483 Trim50
rat	((((((...(((....((((..((....(((((((.((((((.(((((((....)))))))...))))))..)))))))..))..))))...)))..))))))	1.000 -38.90

rat

chromosome:12:22457257:22457359:1

block334266 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	15	3	5arm	22	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	----------------CUGGAAG--------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	---------------CCTGGAAGGACAAAAGCT----------------------------------------------------	18	1
rat	gagtacagcacatgcCCTGGAAGGACAAAAGCTacctacaggagctgtggtgatgactcccaggttagagcatctgctgctctct
	*************************************************************************************
	-----------------------------------------------------------------------------------------------	ENSRNOT00000042632 ENSRNOG00000033121 LOC501237
	-----------------------------------------------------------------------------------------------	ENSRNOT00000039905 ENSRNOG00000033121 LOC501237
	-----------------------------------------------------------------------------------------------	ENSRNOT00000040779 ENSRNOG00000033121 LOC501237
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000044993 ENSRNOG00000026588 LOC680812
rat	(((..(((((.(((((((((.((.((...((((.((....))))))...)).....)).))))).....)))).)))))..))).	0.980 -31.60

rat

chromosome:14:4400868:4400952:-1

block773875 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	12	3	3arm	22	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------CUGGAAG----------------------	1	novel
		len	cloning frequencies
			T3S2
	--------------------------------------------CCTGGAAGGACAAAAGCT------------	18	1
rat	ctccttaatgggaggtgatcgtgtccacctagtacagcacatgcCCTGGAAGGACAAAAGCTacctacaggagc
	**************************************************************************
	------------------------------------------------------------------------------------	ENSRNOT00000046676 ENSRNOG00000031774 RGD1565104_predicted
rat	(((((...((((.(((.....(((((..((((..((.....))..))))..)))))...))).)))).))))).	0.990 -25.30

rat

chromosome:19:24092500:24092573:-1

block773898 [novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	12	3	3arm	22	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------CUGGAAG----------------------	1	novel
		len	cloning frequencies
			T3S2
	--------------------------------------------CCTGGAAGGACAAAAGCT------------	18	1
rat	ctcctaaatgggaggtgatcgtgtccacctagtacagcacatgcCCTGGAAGGACAAAAGCTacctacaggagc
	**************************************************************************
rat	(((((...((((.(((.....(((((..((((..((.....))..))))..)))))...))).)))).))))).	0.990 -25.30