other hairpins
novel_lenNOK_Multihit_randfoldOK_nonpairedHIGH (130 loci)
novel_lenNOK_multiarm_DicerNOK_Multihit (128 loci)
sblock10618 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.351 | no | no | 0.45/0.53 | 19/20/0.17 | 0.0 0.8 | 0.0 0.8 | 1 5 | 0 0 | 1 2 | 0 0 | 7 5 | -3 1 | 5arm_loop 3arm | 11 11 | nd nd | 0.25 0.21 | 4 1 | 6 | 3 | 2 | 0 |
| reads | miRBase family seed | ||||
| seed | ------------------------------GGACUCA------------------ | 3 | novel | ||
| seed | --------------------------------ACUCAGU---------------- | 2 | novel | ||
| seed | --------UGCUCUU---------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------TGGACTCAGTGGGTAGACA------- | 19 | 2 | - | 1 | |
| -------------------------------GACTCAGTGGGTAGACAAA----- | 19 | - | - | 2 | |
| -------TTGCTCTTCTGGTATGCTGA---------------------------- | 20 | - | 1 | - | |
| rat | ggggcatTTGCTCTTCTGGTATGCTGAtgTGGACTCAGTGGGTAGACAAAtctcc | ||||
| ******************************************************* | |||||
| rat | ((((.(((((((((((((((.(((....))).)).))).))).)).))))))))) | 0.990 -13.90 | |||
| rat | chromosome:7:17358998:17359052:-1 | intergenic |
sblock1199 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.53/0.65 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 27 | 17 2 | 5arm 3arm | 8 11 | nd nd | 0.25 0.32 | 3 2 | 2 | 2 | -11 | -12 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------GUGAGCA-------------------------------------- | 1 | novel | |
| seed | -----------UGGCCUG---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------------------------------AGTGAGCATGTCTTGGGAC--------------------------- | 19 | - | 1 | |
| ----------GTGGCCTGCAGAGACTCGAG---------------------------------------------------------------------- | 20 | 1 | - | |
| rat | ggcgggcactGTGGCCTGCAGAGACTCGAGgtgtgtagggcagagccagggaggAGTGAGCATGTCTTGGGACctgacagccaggcggctggcactgcca | |||
| **************************************************************************************************** | ||||
| rat | (((((((...((.((((((((...((((((..((((....((...((.....))..)).))))..))))))..))).....))))).))..)).))))). | 0.840 -39.70 | ||
| rat | chromosome:1:32575431:32575530:1 | intergenic |
sblock1230 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.293 | no | no | 0.23/0.42 | 18/22/0.67 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 1.0 | 1 1 1 3 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 6 23 17 9 | 24 9 8 14 | 5arm 5arm 3arm 3arm | 22 32 32 32 | nd nd nd nd | 0.59 0.45 0.26 0.28 | 6 4 3 3 | 6 | 2 | 6 | 6 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------CAAUUGG---------------------- | 3 | novel | |
| seed | -------UGUAUUU-------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------AAAAUUU--------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------CAGACUC---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------------------------TCAATTGGAGAAGCAAGATGA--------- | 21 | - | 2 | |
| -----------------------TAAAATTTCAACCAGTTTCA--------------------------------------------------------- | 20 | 1 | - | |
| ------ATGTATTTGTAAAGCTGTAAAA------------------------------------------------------------------------ | 22 | - | 1 | |
| ----------------------------------------------------------------------TCAATTGGAGAAGCAAGA------------ | 18 | - | 1 | |
| ----------------------------------------------------------------TCAGACTCAATTGGAGAAG----------------- | 19 | - | 1 | |
| rat | tttcaaATGTATTTGTAAAGCTGTAAAATTTCAACCAGTTTCAtgataagttattagacttgtcTCAGACTCAATTGGAGAAGCAAGATGAtgttggggt | |||
| **************************************************************************************************** | ||||
| rat | ((((((...(((((.....(((......((((((..(((((...((((((((....))))))))..)))))...)))))).))).)))))...)))))). | 0.640 -18.10 | ||
| rat | chromosome:1:47726495:47726594:1 | intergenic |
sblock12365 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.347 | no | no | 0.67/0.79 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 0 | 8 27 | 5arm 3arm | 6 11 | nd nd | 0.37 0.25 | 3 3 | 2 | 2 | 10 | 10 |
| reads | miRBase family seed | |||
| seed | -----------------CCAGGGG----------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------CCCCAGG------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------------------TCCCCAGGGACAGCAAGCAGC | 21 | - | 1 | |
| ----------------GCCAGGGGACCTGGAGGCC------------------------------------------------------------ | 19 | 1 | - | |
| rat | agctcaggctagtcctGCCAGGGGACCTGGAGGCCtggcgcccgcgcggacccctagcccgacctccggtctgcTCCCCAGGGACAGCAAGCAGC | |||
| *********************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046551 ENSRNOG00000040154 LOC685769 | |||
| rat | .(((...(((.(((((....(((((.(((((((...(((..((....)).......)))...))))))).....))))).)))))))).)))... | 0.560 -38.80 | ||
| rat | chromosome:9:5686831:5686925:1 | Same_strand|Intronic_non-coding|ENSRNOT00000046551|ENSRNOG00000040154 ## ENSRNOG00000040154|protein_coding|LOC685769| |
sblock12368 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.130 | no | no | 0.67/0.79 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 0 | 13 22 | 5arm 3arm | 6 11 | nd nd | 0.32 0.25 | 3 3 | 2 | 2 | 10 | 10 |
| reads | miRBase family seed | |||
| seed | -----------------CCAGGGG----------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------CCCCAGG------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------------------TCCCCAGGGACAGCAAGCAGC | 21 | - | 1 | |
| ----------------GCCAGGGGACCTGGAGGCC------------------------------------------------------------ | 19 | 1 | - | |
| rat | agctcaggctagtcctGCCAGGGGACCTGGAGGCCtggcgcccacggggacccctagcccgacctccggtctgcTCCCCAGGGACAGCAAGCAGC | |||
| *********************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046551 ENSRNOG00000040154 LOC685769 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050680 ENSRNOG00000032874 | |||
| rat | .(((...(((.(((((....(((((.(((((((..(((.((....(((....))).))))).))))))).....))))).)))))))).)))... | 0.850 -42.00 | ||
| rat | chromosome:9:5766047:5766141:1 | Same_strand|Intronic_non-coding|ENSRNOT00000046551|ENSRNOG00000040154 ## ENSRNOG00000032874|protein_coding|| ## ENSRNOG00000040154|protein_coding|LOC685769| |
sblock12557 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.060 | no | no | 0.42/0.50 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 17 25 | 7 3 | 5arm 3arm | 2 15 | nd nd | 0.17 0.11 | 1 2 | 2 | 2 | -4 | -8 |
| reads | miRBase family seed | |||
| seed | ------------------GUGCAAU-------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------UACCUCC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----------------TGTGCAATTCTATCTTCTAGGGAG---------------------------------------------------------------- | 24 | - | 1 | |
| --------------------------------------------------------------CTACCTCCCAGAAGATGA------------------------- | 18 | 1 | - | |
| rat | gtctaccaccttaacacTGTGCAATTCTATCTTCTAGGGAGcagggacaaatctgcacggtcCTACCTCCCAGAAGATGAgtcgaggcgttgcagttagcatgac | |||
| ********************************************************************************************************* | ||||
| rat | ...............(((((((.((((.(((((((.(((((..(((((...........)))))..))))))))))))))))....))...)))))......... | 0.600 -31.00 | ||
| rat | chromosome:9:104973076:104973180:1 | intergenic |
sblock1388 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.55/0.58 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 11 | 0 33 | 5arm 3arm | 15 15 | nd nd | 0.25 0.32 | 2 3 | 2 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | -----------------------------AGCAGGU---------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------------AAGGCUU---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------------------------------------CAAGGCTTGGATTCCCAGG----------- | 19 | 1 | |
| ----------------------------TAGCAGGTGTGCTTCCTGAC---------------------------------------------------------------------- | 20 | 1 | |
| rat | tcttatctgcctcttaaaattcagttttTAGCAGGTGTGCTTCCTGACcaaagaagtcagatgagtgcatgaccagcccctgcgaggaCAAGGCTTGGATTCCCAGGagcagacaagg | ||
| ********************************************************************************************************************** | |||
| rat | .(((.(((((..((...(((((((((((..(((((((..(((.(((((.......)))))..)))..)).........)))))......)))))).)))))...))..))))).))). | 0.570 -35.60 |
| rat | chromosome:1:51010743:51010860:1 | intergenic |
sblock1426 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.21/0.47 | 19/20/0.11 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 4 1 | 0 0 0 | 1 2 1 | 0 0 0 | 22 13 5 | 2 20 28 | 5arm 3arm 3arm | 25 25 25 | nd nd nd | 0.21 0.47 0.42 | 2 6 3 | 9 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | ----------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -----------------------GAGUUGA---------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| ----------------------TGAGTTGAAGGCCAAAGTC----------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ----------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagcatttgcccagatttgtcttgagttgaaggccaaagtcgatgcttttgacttttcttttcttcttTAACAAAATATAATCTGGTttcaggtcactgt | |||
| **************************************************************************************************** | ||||
| rat | (((.(((((.((((((((((...(((..(((((..((((((((.....))))))))..)))))..)))..))))......))))))...)))))..))). | 0.820 -22.90 | ||
| rat | chromosome:1:51121381:51121480:1 | intergenic |
sblock1438 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.45/0.58 | 19/22/0.20 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 10 16 | 12 8 | 5arm 3arm | 20 31 | nd nd | 0.05 0.32 | 1 4 | 5 | 1 | -7 | -7 |
| reads | miRBase family seed | ||
| seed | -----------GUCCCAU-------------------------------------------------------------------------- | 4 | novel |
| seed | -------------------------------------------------------ACUUCUG------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------GGTCCCATCAGCTGAGAGT--------------------------------------------------------------- | 19 | 4 | |
| ------------------------------------------------------AACTTCTGCCTTTCAGCCATGA---------------- | 22 | 1 | |
| rat | agactgcgtgGGTCCCATCAGCTGAGAGTagcctccacattgcagtgatgtgcaaacttctgcctttcagccatgatggactttaggatcta | ||
| ******************************************************************************************** | |||
| rat | (((((....((((.(((((((((((((((((....((((((.....)))))).......)))).)))))))..))))))))))..)).))). | 0.980 -29.30 |
| rat | chromosome:1:51259740:51259831:1 | intergenic |
sblock1449 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.261 | no | no | 0.32/0.58 | 19/23/0.43 | 0.0 0.0 0.0 0.7 | 0.0 0.0 0.0 1.7 | 1 2 1 3 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 1 11 38 5 | 37 27 0 21 | 5arm 5arm 5arm 3arm | 23 23 23 23 | nd nd nd nd | 0.32 0.26 0.47 0.25 | 3 3 4 3 | 7 | 2 | -1 | 6 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------------GAAGGAC---------------------- | 2 | novel | |
| seed | ------------GAAUGUA--------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------------------------AGGACCU-------------------- | 1 | novel | |
| seed | --GCAUGAU------------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------GUGCCUC------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------TGAATGTAAAAGGACCTTC---------------------------------------------------------------------------------------- | 19 | - | 2 | |
| ----------------------------------------------------------------------------------------TGAAGGACCTACAATGTCAC---------- | 20 | - | 2 | |
| -TGCATGATCTTGAATGTAA-------------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------AGTGCCTCCACTGTTGCAC------------------------------------------------------------- | 19 | 1 | - | |
| ------------------------------------------------------------------------------------------AAGGACCTACAATGTCACGGGTG----- | 23 | - | 1 | |
| rat | tTGCATGATCTTGAATGTAAAAGGACCTTCgctatctcAGTGCCTCCACTGTTGCACgaactacaaagtctctcagtgcctccactgtTGAAGGACCTACAATGTCACGGGTGctgca | |||
| ********************************************************************************************************************** | ||||
| rat | .((((..(((((((.(((...(((.((((((......(((((....(((((....((..........))....)))))....))))).)))))).))))))...))).))))..)))) | 0.450 -28.60 | ||
| rat | chromosome:1:51426263:51426380:1 | intergenic ## {Repeats: trf 1 19 0 class=trf,trf 50 69 0 class=trf} |
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