other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit (128 loci)
sblock9033 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.56/0.61 | 18/18/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 31 0 | 3 0 45 | 5arm 5arm 3arm | 28 29 34 | nd nd nd | 0.22 0.22 0.65 | 1 1 7 | 3 | 3 | 0 | -15 |
| reads | miRBase family seed | ||||
| seed | --------------------------------UGGCAAC------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------------------------CCACACU---------- | 1 | novel | ||
| seed | -----------------------------CUCUGGC---------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T4S2 | |||
| ----------------------------------------------------------------------------------------------------GCCACACTGGGACAGAGA | 18 | - | 1 | - | |
| -------------------------------CTGGCAACATAGAGCCCC--------------------------------------------------------------------- | 18 | - | - | 1 | |
| ----------------------------CCTCTGGCAACATAGAGC------------------------------------------------------------------------ | 18 | 1 | - | - | |
| rat | gtgtctccctgggggtgtacagcgggcaCCTCTGGCAACATAGAGCCCCggagcaggggcctgcggtcgccccaagaaagatgccccgctgtgtttctagGCCACACTGGGACAGAGA | ||||
| ********************************************************************************************************************** | |||||
| rat | .((((((((((((((..(((((((((((..((((((.((.(((.(((((......))))))))..)).)))...)))....))))).)))))))))))))).......)))))).... | 0.430 -49.41 | |||
| rat | chromosome:4:150638723:150638840:1 | intergenic |
sblock9036 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.154 | no | no | 0.56/0.61 | 18/18/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 31 0 | 3 0 45 | 5arm 5arm 3arm | 28 29 34 | nd nd nd | 0.22 0.22 0.65 | 1 1 7 | 3 | 3 | 0 | -15 |
| reads | miRBase family seed | ||||
| seed | --------------------------------UGGCAAC------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------------------------CCACACU---------- | 1 | novel | ||
| seed | -----------------------------CUCUGGC---------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T4S2 | |||
| ----------------------------------------------------------------------------------------------------GCCACACTGGGACAGAGA | 18 | - | 1 | - | |
| -------------------------------CTGGCAACATAGAGCCCC--------------------------------------------------------------------- | 18 | - | - | 1 | |
| ----------------------------CCTCTGGCAACATAGAGC------------------------------------------------------------------------ | 18 | 1 | - | - | |
| rat | gtgtctccctgggggtgtacagtgggcaCCTCTGGCAACATAGAGCCCCggagcaggggcctgcggtcgccccaagaaagatgccccgctgtgtttctagGCCACACTGGGACAGAGA | ||||
| ********************************************************************************************************************** | |||||
| rat | .((((((((((((((..(((((((((((..((((((.((.(((.(((((......))))))))..)).)))...)))....))))).)))))))))))))).......)))))).... | 0.650 -47.51 | |||
| rat | chromosome:4:150754900:150755017:1 | intergenic |
sblock9037 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.154 | no | no | 0.56/0.61 | 18/18/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 31 0 | 3 0 45 | 5arm 5arm 3arm | 28 29 34 | nd nd nd | 0.22 0.22 0.65 | 1 1 7 | 3 | 3 | 0 | -15 |
| reads | miRBase family seed | ||||
| seed | --------------------------------UGGCAAC------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------------------------CCACACU---------- | 1 | novel | ||
| seed | -----------------------------CUCUGGC---------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T4S2 | |||
| ----------------------------------------------------------------------------------------------------GCCACACTGGGACAGAGA | 18 | - | 1 | - | |
| -------------------------------CTGGCAACATAGAGCCCC--------------------------------------------------------------------- | 18 | - | - | 1 | |
| ----------------------------CCTCTGGCAACATAGAGC------------------------------------------------------------------------ | 18 | 1 | - | - | |
| rat | gtgtctccctgggggtgtacagtgggcaCCTCTGGCAACATAGAGCCCCggagcaggggcctgcggtcgccccaagaaagatgccccgctgtgtttctagGCCACACTGGGACAGAGA | ||||
| ********************************************************************************************************************** | |||||
| rat | .((((((((((((((..(((((((((((..((((((.((.(((.(((((......))))))))..)).)))...)))....))))).)))))))))))))).......)))))).... | 0.650 -47.51 | |||
| rat | chromosome:4:150760398:150760515:1 | intergenic |
sblock9473 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.399 | no | no | 0.42/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 18 24 | 6 2 | 5arm 3arm | 123 129 | nd nd | 0.26 0.32 | 3 3 | 2 | 2 | -3 | -5 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------GCACAGU----------------------------------- | 1 | novel | |
| seed | -------------------AUGUUCC------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| -------------------------------------------------------GGCACAGTCAAGGCTGAGA------------------------ | 19 | 1 | - | |
| ------------------CATGTTCCAGTATGACTCT------------------------------------------------------------- | 19 | - | 1 | |
| rat | cctcaactctatggtctaCATGTTCCAGTATGACTCTacccatggcaaattcaatGGCACAGTCAAGGCTGAGAatgagaagctcgtcatcaacagga | |||
| ************************************************************************************************** | ||||
| rat | (((.......(((..((...(((((((((.(((((....((((..........))))...)))))..)))).)))))...))..))).......))). | 0.670 -18.54 | ||
| rat | chromosome:5:120082530:120082627:-1 | intergenic |
sblock9543 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.171 | no | no | 0.53/0.57 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 0 | 17 26 | 5arm 3arm | 23 29 | nd nd | 0.16 0.25 | 2 3 | 2 | 2 | 6 | 6 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------UGUGAUG------------- | 1 | novel | |
| seed | -----------AAACAGU---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S1 | |||
| ----------GAAACAGTGGCATGGTTCG----------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------------------GTGTGATGCTGTACCCATCCC | 21 | 1 | - | |
| rat | cgggctcgtgGAAACAGTGGCATGGTTCGtgccaaattctgaagcaatcttcctgcaaaggccattggacacagaatctGTGTGATGCTGTACCCATCCC | |||
| **************************************************************************************************** | ||||
| rat | .(((...((((..(((((.((((((((((((((((..(((...(((.......)))..)))...)))).))).))))).))))...)))))..))))))) | 0.540 -29.70 | ||
| rat | chromosome:5:148570166:148570265:-1 | intergenic |
sblock2761 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.47/0.63 | 19/21/0.25 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 0 11 22 | 18 7 3 | 5arm 5arm 3arm | 1 17 17 | 56 45 5 | 0.26 0.16 0.33 | 2 2 3 | 4 | 3 | -5 | -4 |
| reads | miRBase family seed | ||||
| seed | ------------UUUUUGG------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------UCGCCUC----------------------------------- | 1 | novel | ||
| seed | -GGAGUGG------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| -----------TTTTTTGGGGGGGGGCTGG-------------------------------------------------------------- | 19 | 1 | 1 | - | |
| TGGAGTGGGCTTTTTTTGG------------------------------------------------------------------------- | 19 | 1 | - | - | |
| -------------------------------------------------CTCGCCTCAGTTTCCCTCTCT---------------------- | 21 | - | - | 1 | |
| rat | TGGAGTGGGCTTTTTTTGGGGGGGGGCTGGgcgggaccatgcgcttgtcCTCGCCTCAGTTTCCCTCTCTtccagagaggatcatgcaaacc | ||||
| ******************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055760 ENSRNOG00000007367 Sept4 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055757 ENSRNOG00000007367 Sept4 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000009814 ENSRNOG00000007367 Sept4 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000044226 ENSRNOG00000007367 Sept4 | ||||
| rat | ((..(((..(((((((.((((((..((((((((((((.........)))).)))).))))..)))))).....)))))))..))).)).... | 0.970 -39.20 | |||
| rat | chromosome:10:75875361:75875452:1 | Same_strand|Intronic_coding|ENSRNOT00000044226|ENSRNOG00000007367 ## Same_strand|Boundary_non-coding|ENSRNOT00000055756|ENSRNOG00000007367 ## ENSRNOG00000007367|protein_coding|Sept4|septin 4 [Source:RefSeq_peptide;Acc:NP_001011893] ## {Repeats: dust 75875385 75875386 0 class=dust,dust 75875378 75875386 0 class=dust} |
sblock3855 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.50/0.63 | 19/20/0.50 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 4 | 0 0 0 | 1 1 3 | 0 0 0 | 13 22 11 | 11 13 23 | 5arm 3arm 3arm | 71 71 71 | nd nd nd | 0.26 0.42 0.35 | 2 5 3 | 8 | 4 | 5 | 5 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------CCGUUGU----------------------- | 4 | novel | |||
| seed | ----------------------------------------------------------------------------CGUUGUG---------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------CCCAAUG--------------------------------- | 1 | novel | |||
| seed | --------------AUCCCAG------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T3S1 | |||
| --------------------------------------------------------------------------TCCGTTGTGGATCTGACATG----------- | 20 | - | - | - | 4 | |
| ---------------------------------------------------------------------------CCGTTGTGGATCTGACATG----------- | 19 | 1 | - | 1 | - | |
| -------------CATCCCAGAGCTGAACGGG------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------CCCCAATGTATCCGTTGTG---------------------- | 19 | - | 1 | - | - | |
| rat | ctgtaggcaatgtcatcccagagctgaacgggaagctcactggcatagccttcggtgttcctacccccaatgtaTCCGTTGTGGATCTGACATGctgcctggaga | |||||
| ********************************************************************************************************* | ||||||
| rat | ((.((((((((((((..(((.(((.(((((((.((..((((((........))))))...)).))).....)).)).))).)))...))))))..)))))).)). | 0.540 -34.70 | ||||
| rat | chromosome:13:43443557:43443661:1 | intergenic |
sblock9988 [novel_lenNOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.145 | no | no | 0.53/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 16 3 | 10 27 | 5arm 3arm | 137 137 | nd nd | 0.21 0.42 | 2 3 | 3 | 2 | 13 | 13 |
| reads | miRBase family seed | |||
| seed | -----------------AGGCUGU-------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------------------CCCAAUG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ----------------AAGGCTGTGGGCAAGGTCA--------------------------------------------------------------- | 19 | 1 | 1 | |
| ----------------------------------------------------------------------------CCCCAATGTATCCGTTGTG--- | 19 | 1 | - | |
| rat | atccactcgtgctgccAAGGCTGTGGGCAAGGTCAtcccaagatgaactcactggcatggccttctgtgttcctacCCCCAATGTATCCGTTGTGgat | |||
| ************************************************************************************************** | ||||
| rat | ((((((.((...(((...((..(((((.((((((((.((.((.((....)))))).)))))))).......)))))..))...)))..))..)))))) | 0.600 -28.10 | ||
| rat | chromosome:6:54668005:54668102:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap (127 loci)
block1573432 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.121 | no | no | 0.50/0.62 | 18/23/0.50 | 2.8 2.0 0.0 | 3.2 0.7 0.0 | 4 3 1 | 0 0 0 | 4 3 1 | 0 0 0 | 11 24 4 | -9 -19 2 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.39 0.30 0.30 | 3 3 4 | 8 | 6 | 3 | 0 |
| reads | miRBase family seed | |||||||
| seed | ----------------------------ACACCAC---------------------- | 2 | novel | |||||
| seed | -------------UGCUAGA------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------CAGGCUA---------------- | 1 | novel | |||||
| seed | -------------------------AGGACAC------------------------- | 1 | novel | |||||
| seed | -------------------AGUCUCA------------------------------- | 1 | novel | |||||
| seed | ------------GUGCUAG-------------------------------------- | 1 | novel | |||||
| seed | ---------------CUAGAGU----------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| ------------------------CAGGACACCACAGGCTACACG------------ | 21 | - | - | - | 1 | - | - | |
| --------------GCTAGAGTCTCAGGACACCACAG-------------------- | 23 | - | - | - | - | 1 | - | |
| ---------------------------------ACAGGCTACACGGAGTTATC---- | 20 | 1 | - | - | - | - | - | |
| ------------------GAGTCTCAGGACACCACA--------------------- | 18 | - | - | - | - | - | 1 | |
| ------------GTGCTAGAGTCTCAGGAC--------------------------- | 18 | - | - | 1 | - | - | - | |
| ---------------------------GACACCACAGGCTACACGGA---------- | 20 | - | - | - | - | - | 1 | |
| ---------------------------GACACCACAGGCTACACG------------ | 18 | - | 1 | - | - | - | - | |
| -----------AGTGCTAGAGTCTCAGGAC--------------------------- | 19 | 1 | - | - | - | - | - | |
| rat | gcaccaactccAGTGCTAGAGTCTCAGGACACCACAGGCTACACGGAGTTATCccgc | |||||||
| ********************************************************* | ||||||||
| rat | .....((((((.(((....(((((..((...))..))))).)))))))))....... | 0.960 -14.60 | ||||||
| rat | chromosome:4:116975435:116975491:-1 | intergenic ## {SimpF: oe = 0.81 -1 CpG} |
block2247768 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.50/0.60 | 19/25/0.30 | 0.0 0.0 0.0 2.0 0.0 | 0.0 0.0 0.0 1.5 0.0 | 1 5 1 2 1 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 23 35 41 23 16 | -5 -11 -20 2 12 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.40 0.42 0.68 0.47 0.25 | 6 6 9 7 2 | 10 | 1 | 3 | -5 |
| reads | miRBase family seed | ||
| seed | ------------------------------------GAGUCUC------------------------------------------------------ | 5 | novel |
| seed | ----------------------------------------------------ACCUAAG-------------------------------------- | 1 | novel |
| seed | ------------------------------------------CAGAGAA------------------------------------------------ | 1 | novel |
| seed | ------------------------UGGCAGC------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------AAGUGUG---------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------GCAGAGG---------------------------- | 1 | miR-298 |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------TGAGTCTCAGAGAAGGGAC------------------------------------------- | 19 | 5 | |
| -----------------------TTGGCAGCCTCATGAGTCTCAGAGA------------------------------------------------- | 25 | 1 | |
| -------------------------------------------------------------TGCAGAGGAGGCCAAGTGAG---------------- | 20 | 1 | |
| -------------------------------------------------------TAAGTGTGCAGAGGAGGCC----------------------- | 19 | 1 | |
| -----------------------------------------TCAGAGAAGGGACCTAAGTGTG---------------------------------- | 22 | 1 | |
| ---------------------------------------------------GACCTAAGTGTGCAGAGGAG-------------------------- | 20 | 1 | |
| rat | tctgagaggagctggagtgagcattggcagcctcaTGAGTCTCAGAGAAGGGACctaagtgtgcagaggaggccaagtgagcctggatggttcaggt | ||
| ************************************************************************************************* | |||
| rat | ((((((.....((((.((..((.(((((..((((.((.(((((......))))).........))))))..)))))))..))))))....)))))). | 0.770 -31.90 |
| rat | chromosome:7:112746336:112746432:1 | intergenic |
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