other hairpins
novel_lenNOK_multiarm_DicerNOK_randfoldOK (119 loci)
sblock9628 [novel_lenNOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.64/0.72 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 25 14 | 21 16 | 5arm 3arm | 1 1 | nd nd | 0.56 0.14 | 5 1 | 2 | 2 | 0 | 9 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------CACCAGC---------------------------- | 1 | novel | |
| seed | --------------------------AGCACCC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T4S2 | |||
| -------------------------GAGCACCCGGCTGGCTAC----------------------------------------------------------------------------- | 18 | - | 1 | |
| ------------------------------------------------------------------------------------TCACCAGCCACTCCTGCCTGTG-------------- | 22 | 1 | - | |
| rat | aggggtgaggtgggggcggaggctgGAGCACCCGGCTGGCTACaagttttggaagagtccacccccctgggtaggcagctcttcTCACCAGCCACTCCTGCCTGTGtgcctgcagcctct | |||
| ************************************************************************************************************************ | ||||
| rat | ((((((...(((((.(((.((((.((((.....((((((..........(((((((((((((((....)))).))..))))))).)))))))).)))).)))).))).))))).)))))) | 0.830 -60.00 | ||
| rat | chromosome:5:167908191:167908310:-1 | intergenic |
sblock9707 [novel_lenNOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.74 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 8 | 24 22 | 5arm 3arm | 1 1 | nd nd | 0.33 0.16 | 2 1 | 2 | 2 | 0 | 4 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------AGGGUGC------------------- | 1 | novel | |
| seed | -----------UCGUUGU--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| ----------ATCGTTGTGGCTTCCCTG----------------------------------------------------------------------------- | 18 | 1 | - | |
| ------------------------------------------------------------------------------AAGGGTGCCGCTGGTCCCC-------- | 19 | - | 1 | |
| rat | gggtgtgggtATCGTTGTGGCTTCCCTGtacagcgtcggatctgctagtgactcttgtcacaccttttgccatgctctAAGGGTGCCGCTGGTCCCCcccacccc | |||
| ********************************************************************************************************* | ||||
| rat | (((((.(((.((((..(((((..((((....(((((.((........(((((....)))))........)))))))...)))).))))))))).)))..))))). | 0.990 -44.39 | ||
| rat | chromosome:5:61968559:61968663:1 | intergenic |
sblock9851 [novel_lenNOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.72/0.77 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 7 | 6 4 | 5arm 3arm | 1 1 | nd nd | 0.17 0.23 | 2 2 | 2 | 2 | -2 | 1 |
| reads | miRBase family seed | |||
| seed | ---------CCGUGGG---------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------CCCCGGC--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| --------GCCGTGGGTGGAGTTGGG------------------------------------------ | 18 | - | 1 | |
| ---------------------------------------GCCCCGGCTCCACCATCGGACC------- | 22 | 1 | - | |
| rat | ggtagacgGCCGTGGGTGGAGTTGGGactcactccgtgcGCCCCGGCTCCACCATCGGACCtgtacca | |||
| ******************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013322 ENSRNOG00000009712 Gale | |||
| rat | ((((...(((((..((((((((((((...(((...)))...))))))))))))..))).))..)))). | 1.000 -36.20 | ||
| rat | chromosome:5:154748936:154749003:1 | Same_strand|Intronic_coding|ENSRNOT00000013322|ENSRNOG00000009712 ## ENSRNOG00000009712|protein_coding|Gale|UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). [Source:UniProtKB/Swiss-Prot;Acc:P18645] |
sblock9949 [novel_lenNOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.53/0.61 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 9 9 | 24 25 | 5arm 3arm | 1 1 | nd nd | 0.21 0.17 | 2 2 | 2 | 2 | 0 | -1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------CUCCCUC------------------- | 1 | miR-343 | |
| seed | ----------UGGGAAA--------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T4S2 | |||
| -----------------------------------------------------------------------------------ACTCCCTCGCCTTTCCCA--------- | 18 | 1 | - | |
| ---------GTGGGAAAGGATGTGGAGA---------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | ctgtaggatGTGGGAAAGGATGTGGAGAagagatgtggtgggaagacagtctccccatggattccttcccttcacctgggctcACTCCCTCGCCTTTCCCAaaacccaga | |||
| ************************************************************************************************************** | ||||
| <<<<<------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000009042 ENSRNOG00000006556 Slc5a6 | |||
| rat | (((..((...(((((((((.((.((((..(((..((((.((((((..(((((......))))).)))))).)))).....))).))))..)))))))))))...))))). | 1.000 -43.60 | ||
| rat | chromosome:6:25306782:25306891:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000009042|ENSRNOG00000006556 ## ENSRNOG00000006556|protein_coding|Slc5a6|Sodium-dependent multivitamin transporter (Na(+)-dependent multivitamin transporter) (Solute carrier family 5 member 6). [Source:UniProtKB/Swiss-Prot;Acc:O70247] |
novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (118 loci)
block3199 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 6 | 3arm | 1 | nd | 0.50 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------GGUAAGC---------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ----------------------------------------TGGTAAGCTGGAGGACAGGA---- | 20 | 1 | |
| rat | cctgtctgtcaaaagagacacaggctgctgaggaagcagcTGGTAAGCTGGAGGACAGGAagga | ||
| **************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003439 ENSRNOG00000002545 NP_001100442.1 | ||
| rat | (((..(((((...((..((...(((((((.....))))))).))...))....)))))..))). | 0.990 -27.30 |
| rat | chromosome:10:6786158:6786221:-1 | Same_strand|Intronic_coding|ENSRNOT00000003439|ENSRNOG00000002545 ## ENSRNOG00000002545|protein_coding|NP_001100442.1|similar to CG4768-PA (predicted) (RGD1309748_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001106972] |
block39990 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 26 | 3arm | 1 | nd | 0.41 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------------ACUUCUG------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------------------------------------GACTTCTGAATCAGGACAGGTC---- | 22 | 1 | |
| rat | cttaatcctggcgaggcgggagtttggggaggtctgtgaagctgagttgaaggctgtgtctagaaaagtggacttggcgataggctgtctttGACTTCTGAATCAGGACAGGTCgaag | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000055405 ENSRNOG00000036894 Mel13 | ||
| rat | (((...((((..((..((((((((..((..(((((((...((..((((....(((...........))).))))..)).)))))))..))..))))))))..))....))))...))) | 0.960 -39.10 |
| rat | chromosome:10:86410995:86411112:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000055405|ENSRNOG00000036894 ## ENSRNOG00000036894|protein_coding|Mel13|CDGSH iron sulfur domain 3 Gene [Source:MGI (curated);Acc:Mel13-002] |
block43650 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 1 | 5arm | 1 | nd | 0.33 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----GGUUCGG------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---GGGTTCGGAACTTGTTTGCAG----------------------------- | 21 | 1 | |
| rat | agaGGGTTCGGAACTTGTTTGCAGcagtagctgcaataagagagaaaaatctg | ||
| ***************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055176 ENSRNOG00000002818 Eftud2 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003807 ENSRNOG00000002818 Eftud2 | ||
| rat | (((...(((....((((.(((((((....)))))))))))...)))...))). | 1.000 -16.70 |
| rat | chromosome:10:92031904:92031956:-1 | Same_strand|Intronic_coding|ENSRNOT00000003807|ENSRNOG00000002818 ## ENSRNOG00000002818|protein_coding|Eftud2|Eftud2 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5EB83] |
block57396 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 27 | 3arm | 1 | nd | 0.42 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------CUGCAUC------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------------------------------------------------------------------------ACTGCATCCAAAACCAGCCC | 20 | 1 | |
| rat | ggctgggcactatgaggatgatcggggtgttgatggagggggagccgaggctgcttggctgacctccccctcaacatctgACTGCATCCAAAACCAGCCC | ||
| **************************************************************************************************** | |||
| rat | ((((((.........(((((.((.(((((((((.((.((((((((((((....)))))))..))))))).)))))))))))...)))))....)))))). | 0.660 -50.12 |
| rat | chromosome:10:8403615:8403714:1 | intergenic |
block72305 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.73/0.73 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 27 | 5arm | 1 | nd | 0.41 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GGGGGUG------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| TGGGGGTGGTCAGGGAGGGGGA---------------------------------------------------------------------------- | 22 | 1 | |
| rat | TGGGGGTGGTCAGGGAGGGGGAatgcttaccctggaaaggaatgaggaggaagctcagaaacaaacagccagagaaagtgccccttctccaaaatcaa | ||
| ************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003447 ENSRNOG00000002488 Galnt10 | ||
| rat | (((...(((....((((((((...((((...((((...........(((....)))............))))...)))).)))))))))))...))). | 0.830 -29.20 |
| rat | chromosome:10:43284938:43285035:1 | Same_strand|Intronic_coding|ENSRNOT00000003447|ENSRNOG00000002488 ## ENSRNOG00000002488|protein_coding|Galnt10|Polypeptide N-acetylgalactosaminyltransferase 10 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 10) (UDP- GalNAc:polypeptide N-acetylgalactosaminyltransferase 10) (Polypeptide GalNAc transferase 10) (GalNAc-T10) (pp-GaNTase 10). [Source:UniProtKB/Swiss-Prot;Acc:Q925R7] |
block88440 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.67/0.67 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 3 | 35 | 5arm | 1 | nd | 0.52 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----CCUAGAG------------------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---GCCTAGAGTCTGGGAGGTCCC------------------------------------------------------------------------------------------ | 21 | 2 | |
| rat | tgaGCCTAGAGTCTGGGAGGTCCCataccaggctgggagcagctccttcacagccctgtacttgacagttggttgtgactgctttcctcttatcttcctcctctcaccccctca | ||
| ****************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010296 ENSRNOG00000007606 Rnf43_predicted | ||
| rat | .(((....(((...((((((....(((..(((...(((((((.....((((((((((((.....))))..))))))))))))))))))..)))...))))))))).....))). | 0.490 -37.00 |
| rat | chromosome:10:76019313:76019426:1 | Same_strand|Intronic_coding|ENSRNOT00000010296|ENSRNOG00000007606 ## ENSRNOG00000007606|protein_coding|Rnf43_predicted| |
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