miR-Intess™

other hairpins

novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (118 loci)

block1410451 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.005

no

no

0.50/0.50

20/20/1.00

0.0

0.0

2

0

1

0

4

10

5arm

2

nd

0.40

4

2

1

na

na

		reads	miRBase family seed
seed	---------------------------------AGCAAUG--------------------------------	1	novel
seed	-----AGCAAUG------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----CAGCAATGGGTAACAGAACC------------------------------------------------	20	1
	--------------------------------CAGCAATGGGTAACAGAACC--------------------	20	1
rat	actcCAGCAATGGGTAACAGAACCtgtcactcCAGCAATGGGTAACAGAACCtgtcactccagcaatgggta
	************************************************************************
	----------------------------------------------------------------------------------	ENSRNOT00000013957 ENSRNOG00000010131 NP_001101256.1
rat	((.(((....(((((.((((...((((.((.(((....))))).))))...)))).)).)))....))))).	0.970 -24.40

rat

chromosome:3:134492043:134492114:-1

Opposite_strand|Intronic_coding|ENSRNOT00000013957|ENSRNOG00000010131 ## ENSRNOG00000010131|protein_coding|NP_001101256.1|Ras and Rab interactor 2 [Source:RefSeq_peptide;Acc:NP_001101256] ## {Repeats: trf 32 52 0 class=trf}

block1410452 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.005

no

no

0.50/0.50

20/20/1.00

0.0

0.0

2

0

1

0

4

10

5arm

2

nd

0.40

4

2

1

na

na

		reads	miRBase family seed
seed	---------------------------------AGCAAUG--------------------------------	1	novel
seed	-----AGCAAUG------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----CAGCAATGGGTAACAGAACC------------------------------------------------	20	1
	--------------------------------CAGCAATGGGTAACAGAACC--------------------	20	1
rat	actcCAGCAATGGGTAACAGAACCtgtcactcCAGCAATGGGTAACAGAACCtgtcactccagcaatgggta
	************************************************************************
	----------------------------------------------------------------------------------	ENSRNOT00000013957 ENSRNOG00000010131 NP_001101256.1
rat	((.(((....(((((.((((...((((.((.(((....))))).))))...)))).)).)))....))))).	0.970 -24.40

rat

chromosome:3:134492043:134492114:-1

Opposite_strand|Intronic_coding|ENSRNOT00000013957|ENSRNOG00000010131 ## ENSRNOG00000010131|protein_coding|NP_001101256.1|Ras and Rab interactor 2 [Source:RefSeq_peptide;Acc:NP_001101256] ## {Repeats: trf 60 80 0 class=trf}

novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (112 loci)

block13827 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.004

no

no

0.56/0.56

18/18/0.00

0.0

0.0

1

0

1

0

4

-3

5arm_loop

1

nd

0.33

4

1

1

na

na

		reads	miRBase family seed
seed	-----UGAUGCU-------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----CTGATGCTCTCTGGGGAT---------------------------	18	1
rat	gagaCTGATGCTCTCTGGGGATttcttgcccagacagcataagattttc
	*************************************************
rat	....((.(((((.((((((.........)))))).))))).))......	1.000 -17.20

rat

chromosome:10:31314060:31314108:-1

intergenic

block37880 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.005

no

no

0.63/0.63

19/19/0.00

0.0

0.0

1

0

1

0

4

-3

5arm_loop

2

nd

0.53

4

1

1

na

na

		reads	miRBase family seed
seed	-----UCGCCUU----------------------------------	1	novel
		len	cloning frequencies
			T2S2
	----GTCGCCTTACCTCCTGACC-----------------------	19	1
rat	gtggGTCGCCTTACCTCCTGACCttcagctgggaccagcgatccac
	**********************************************
rat	(((((((((....((..(((.....)))..)).....)))))))))	1.000 -20.60

rat

chromosome:10:82775003:82775048:-1

intergenic

block42055 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.003

no

no

0.39/0.43

18/21/0.33

0.0

1.3

3

0

2

0

0

-1

5arm_loop

1

nd

0.42

4

3

2

na

na

		reads	miRBase family seed
seed	-GAAGUGU------------------------------------	3	novel
		len	cloning frequencies
			T2S1	T2S2
	TGAAGTGTGACAATGTGTGCA-----------------------	21	1	-
	TGAAGTGTGACAATGTGT--------------------------	18	-	1
	TGAAGTGTGACAATGTGTG-------------------------	19	1	-
rat	TGAAGTGTGACAATGTGTGCAaaagtacagagggtgacatgaca
	********************************************
rat	....((((.((....(((((....)))))....)).))))....	1.000 -10.60

rat

chromosome:10:89751625:89751668:-1

intergenic

block47028 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.009

no

no

0.50/0.50

18/18/0.00

0.0

0.0

1

0

1

0

2

-3

5arm_loop

1

nd

0.39

4

1

1

na

na

		reads	miRBase family seed
seed	---AGUCAGC------------------------------	1	novel
		len	cloning frequencies
			T5S2
	--CAGTCAGCACTTAGGAAC--------------------	18	1
rat	ggCAGTCAGCACTTAGGAACaacacccaaggttgtctgtc
	****************************************
rat	(((((.((((.(((.((........))))))))).)))))	1.000 -14.10

rat

chromosome:10:98441289:98441328:-1

intergenic

block50949 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.001

no

no

0.50/0.50

18/18/0.00

0.0

0.0

1

0

1

0

4

-3

5arm_loop

1

nd

0.39

4

1

1

na

na

		reads	miRBase family seed
seed	-----GGAAGGG--------------------------------	1	novel
		len	cloning frequencies
			T3S2
	----GGGAAGGGGGTTTTTAAG----------------------	18	1
rat	gttgGGGAAGGGGGTTTTTAAGctagggaaaactttcctcagca
	********************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000034817 ENSRNOG00000025254 RGD1562974_predicted
rat	(((((((((((...(((((......)))))..))))))))))).	1.000 -17.30

rat

chromosome:10:106553682:106553725:-1

Same_strand|Intronic_coding|ENSRNOT00000034817|ENSRNOG00000025254 ## ENSRNOG00000025254|protein_coding|RGD1562974_predicted|

block51327 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.004

no

no

0.56/0.56

18/18/0.00

0.0

0.0

1

0

1

0

2

-4

5arm_loop

1

nd

0.50

5

1

1

na

na

		reads	miRBase family seed
seed	---CCCCACC-------------------------	1	novel
		len	cloning frequencies
			T1S1
	--TCCCCACCAACTCCTTGA---------------	18	1
rat	ccTCCCCACCAACTCCTTGAagggcacgtggggag
	***********************************
	---------------------------------------------	ENSRNOT00000049753 ENSRNOG00000024954 NP_001100538.1
rat	.((((((((....(((.....)))...))))))))	1.000 -16.50

rat

chromosome:10:107071479:107071513:-1

Opposite_strand|Boundary_non-coding|ENSRNOT00000034231|ENSRNOG00000024954 ## Opposite_strand|Intronic_coding|ENSRNOT00000049753|ENSRNOG00000024954 ## ENSRNOG00000024954|protein_coding|NP_001100538.1|mannoside acetylglucosaminyltransferase 5, isoenzyme B [Source:RefSeq_peptide;Acc:NP_001100538]

block66595 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.005

no

no

0.44/0.44

18/18/0.00

0.0

0.0

1

0

1

0

2

-4

5arm_loop

1

nd

0.39

5

1

1

na

na

		reads	miRBase family seed
seed	---UUUAUGC---------------------------	1	novel
		len	cloning frequencies
			T4S2
	--TTTTATGCAGGGGCGAAA-----------------	18	1
rat	gtTTTTATGCAGGGGCGAAAggtactgcagtgggaac
	*************************************
	+++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000047970 ENSRNOG00000028845 Ebf1
rat	((((((((((((..((.....)).))))).)))))))	1.000 -10.70

rat

chromosome:10:29831796:29831832:1

Same_strand|Intronic_coding|ENSRNOT00000047970|ENSRNOG00000028845 ## ENSRNOG00000028845|protein_coding|Ebf1|Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) (Olfactory neuronal transcription factor) (Olf-1). [Source:UniProtKB/Swiss-Prot;Acc:Q63398]

block91168 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.005

no

no

0.63/0.63

19/19/0.00

0.0

0.0

1

0

1

0

4

-3

5arm_loop

2

nd

0.53

4

1

1

na

na

		reads	miRBase family seed
seed	-----UCGCCUU----------------------------------	1	novel
		len	cloning frequencies
			T2S2
	----GTCGCCTTACCTCCTGACC-----------------------	19	1
rat	gtggGTCGCCTTACCTCCTGACCttcagctgggaccagcgatccac
	**********************************************
rat	(((((((((....((..(((.....)))..)).....)))))))))	1.000 -20.60

rat

chromosome:10:82763783:82763828:1

intergenic

Back to summary page

other hairpins:

Page 1

Jump 10 pages back

Previous page

Page 30138

Next page

Jump 10 pages forward

Page 31204