other hairpins
novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (112 loci)
block2551506 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -2 | 5arm_loop | 1 | nd | 0.42 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---AAGCAUC-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| --GAAGCATCAGCACTACCTT--------------------- | 19 | 1 | |
| rat | gaGAAGCATCAGCACTACCTTtgttttggtattgctgttctc | ||
| ****************************************** | |||
| rat | (((((....(((((.((((........)))).)))))))))) | 1.000 -14.90 |
| rat | chromosome:9:105323370:105323411:-1 | intergenic |
block2667698 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -3 | 5arm_loop | 1 | nd | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CCUCUUA------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----GCCTCTTAGGATACTATA-------------------------- | 18 | 1 | |
| rat | tttgGCCTCTTAGGATACTATAgaagagaaagggttgtgggaggtgga | ||
| ************************************************ | |||
| rat | .((.((((((((.((..((...........))..)).)))))))).)) | 1.000 -13.50 |
| rat | chromosome:X:14896736:14896783:-1 | intergenic |
block1006896 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -2 | 5arm_loop | 1 | nd | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --AGUUUCU----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -AAGTTTCTTGGGGTTTTA------------------- | 18 | 1 | |
| rat | gAAGTTTCTTGGGGTTTTAtaaaatcccatgttatttc | ||
| ************************************** | |||
| rat | (((((....((((((((....))))))))....))))) | 1.000 -11.10 |
| rat | chromosome:1:150175986:150176023:1 | intergenic |
block1060298 [novel_lenNOK_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | -2 | 5arm_loop | 1 | nd | 0.42 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----GUACACC----------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ---TGTACACCATAAGGCAGGA------------------------ | 19 | 1 | |
| rat | ccaTGTACACCATAAGGCAGGAcaggtactggccagggtgtcatgg | ||
| ********************************************** | |||
| rat | (((((.(((((....(((((........))).))..)))))))))) | 1.000 -19.00 |
| rat | chromosome:20:5499798:5499843:-1 | intergenic |
novel_multiarm_DicerNOK (112 loci)
sblock10012 [novel_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.60/0.65 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 5 6 | 10 3 | 5arm 3arm | 1 1 | nd nd | 0.25 0.17 | 4 3 | 2 | 2 | -4 | 0 |
| reads | miRBase family seed | |||
| seed | ------UCUAGAG-------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------GGAGCAG--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| -----CTCTAGAGACAGCTCGGTGC-------------------------------------------------- | 20 | 1 | - | |
| ----------------------------------------------GGGAGCAGCTGTGGGCTCTTGAG------ | 23 | - | 1 | |
| rat | ggcgaCTCTAGAGACAGCTCGGTGCtctcggcaagccagagaacttGGGAGCAGCTGTGGGCTCTTGAGtctcca | |||
| *************************************************************************** | ||||
| ------------------------------------------------------------------------------------- | ENSRNOT00000012609 ENSRNOG00000022714 Sstr1 | |||
| ..................................................................................>>> | ENSRNOT00000030706 ENSRNOG00000022697 Clec14a | |||
| rat | ((.(((((.(((((((((....((((((...((((........)))))))))))))))...)))).))))).)). | 0.950 -30.60 | ||
| rat | chromosome:6:78854732:78854806:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000012609|ENSRNOG00000022714 ## ENSRNOG00000022714|protein_coding|Sstr1|Somatostatin receptor type 1 (SS1R) (SRIF-2). [Source:UniProtKB/Swiss-Prot;Acc:P28646] |
sblock10173 [novel_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.297 | no | no | 0.62/0.82 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 25 | 11 1 | 5arm 3arm | 1 1 | nd nd | 0.38 0.18 | 4 2 | 2 | 2 | -5 | -2 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------CCCGGCA--------------------------------------- | 1 | novel | |
| seed | ---------------------UGAGUGU-------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S1 | |||
| -------------------------------------------------------------ACCCGGCACAGCCCCGCACCCC------------------------- | 22 | - | 1 | |
| --------------------CTGAGTGTGGGCAGCATGGTG------------------------------------------------------------------- | 21 | 1 | - | |
| rat | gggcaggatgggcagctaccCTGAGTGTGGGCAGCATGGTGaggcgagggtgtacatgttcACCCGGCACAGCCCCGCACCCCagccagcatgggtcctttcctacct | |||
| ************************************************************************************************************ | ||||
| rat | (((.((((.((((.(((...(((.(((((((..((.((.....((..(((((........))))).)).)))))))))))..)))..)))....))))..)))).))) | 0.850 -43.10 | ||
| rat | chromosome:6:135710217:135710324:-1 | intergenic |
sblock10187 [novel_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.533 | no | no | 0.62/0.62 | 21/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 7 | 13 6 | 5arm 3arm | 1 2 | nd nd | 0.29 0.42 | 2 3 | 2 | 2 | -8 | -7 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------CCACGGU----------------------- | 1 | novel | |
| seed | -GGCCGCG-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------GCCACGGTGTTCTGGAGAGTGCTG------- | 24 | - | 1 | |
| AGGCCGCGAGTGTTTAGGGTC------------------------------------------------------- | 21 | 1 | - | |
| rat | AGGCCGCGAGTGTTTAGGGTCgcgaggtggaagtttgctgcagtcGCCACGGTGTTCTGGAGAGTGCTGcgccgcc | |||
| **************************************************************************** | ||||
| rat | .(((.(((((..(((.((..((((.(((((..((.....))..))))).)).))..))...)))..)).))).))) | 0.640 -25.70 | ||
| rat | chromosome:6:137677640:137677715:-1 | intergenic ## {Repeats: trf 34 58 0 class=trf,trf 6 30 0 class=trf} |
sblock10338 [novel_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.62/0.75 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 18 8 | 12 26 | 5arm 3arm | 1 1 | nd nd | 0.30 0.57 | 3 6 | 2 | 2 | 0 | 11 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------CCGCUUG--------------------- | 1 | novel | |
| seed | -------------------GCCCCCG------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T4S2 | |||
| ---------------------------------------------------------------------------------ACCGCTTGCTGCCCAGCGATT-------- | 21 | - | 1 | |
| ------------------AGCCCCCGCCTCGGTTCCTC------------------------------------------------------------------------ | 20 | 1 | - | |
| rat | cctagtcagttaaaaagcAGCCCCCGCCTCGGTTCCTCcgggtttcggggacccgccccacccgggtgcctgcggggacacACCGCTTGCTGCCCAGCGATTtgctggga | |||
| ************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033378 ENSRNOG00000027707 NP_001102185.1 | |||
| rat | ((((((.((((.....(((((((((((...(((...(((((((...((((.....))))))))))).))).))))))...........))))).....)))).)))))). | 0.450 -49.80 | ||
| rat | chromosome:6:104231621:104231730:1 | Same_strand|Intronic_non-coding|ENSRNOT00000033378|ENSRNOG00000027707 ## ENSRNOG00000027707|protein_coding|NP_001102185.1|exonuclease 3''-5'' domain-like 2 [Source:RefSeq_peptide;Acc:NP_001102185] |
sblock10373 [novel_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.32/0.40 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 16 10 | 23 22 | 5arm 3arm | 1 1 | nd nd | 0.41 0.30 | 6 3 | 3 | 1 | 0 | 6 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------------GAAAUAG---------------------- | 2 | novel |
| seed | -----------------CAACUUG------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------------------------------------------TGAAATAGACCCTTTTGGGT---------- | 20 | 2 | |
| ----------------TCAACTTGGTTGTTTTGATTCT---------------------------------------------------------------------------------- | 22 | 1 | |
| rat | acagggcacccaaataTCAACTTGGTTGTTTTGATTCTaattatccaataactggcaaggataggttttctttgcccatggaggaatctaTGAAATAGACCCTTTTGGGTacgttacctg | ||
| ************************************************************************************************************************ | |||
| rat | .((((..(((((((.........((((.(((.((((((.....((((......((((((((.......))))))))..))))))))))...)))...))))..)))))))......)))) | 0.460 -33.00 |
| rat | chromosome:6:122585058:122585177:1 | intergenic |
sblock10487 [novel_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.36/0.45 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 18 | 6 4 | 5arm 3arm | 1 1 | nd nd | 0.25 0.45 | 2 6 | 2 | 2 | -2 | -1 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------AUCCAUG-------------------------------- | 1 | novel | |
| seed | -----------GCUGAUG------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------GGCTGATGATGTGAGTTGAA------------------------------------------------------ | 20 | 1 | - | |
| --------------------------------------------AATCCATGATCACGTTAAACAG------------------ | 22 | - | 1 | |
| rat | catgcgtatgGGCTGATGATGTGAGTTGAAtgcatctgagggggAATCCATGATCACGTTAAACAGctgaggtccgtcgcatga | |||
| ************************************************************************************ | ||||
| rat | ((((((.(((((((..((((((((..((.((...((....))...)).))...)))))))).........))))))))))))). | 0.620 -25.60 | ||
| rat | chromosome:6:134371334:134371417:1 | intergenic |
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