miR-Intess: classification

other hairpins

novel_lenNOK_cloningOK_bulgeHIGH (110 loci)

block3115770 [novel_lenNOK_cloningOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.267	no	no	0.47/0.50	18/19/0.00	0.0	0.0	5	0	6	0	24	4	3arm	1	nd	0.22	4	11	6	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CUCCCAA----------------------------------	11	miR-150
		len	cloning frequencies
			T1S1	T1S2	T2S2	T3S1	T4S2	T5S1
	----------------------------------------------------------------TCTCCCAACCCTGTGAAA------------------------	18	1	1	1	5	1	1
	----------------------------------------------------------------TCTCCCAACCCTGTGAAAT-----------------------	19	-	-	-	-	-	1
rat	acacacattactagtgttacctgtggccagtagggcaactcctttgtggagagcatgctaattaTCTCCCAACCCTGTGAAAtcagacagcatatctaataagtgt
	**********************************************************************************************************
rat	((((..((((...(((((..(((....((.(((((........(((.(((((..((....))..)))))))))))))))....)))..)))))...))))..))))	0.740 -22.60

rat

chromosome:X:142881439:142881544:1

intergenic

block3135646 [novel_lenNOK_cloningOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.312	no	no	0.33/0.37	18/19/0.00	0.0	0.0	18	0	4	0	10	20	5arm	1	nd	0.28	4	21	4	na	na

		reads	miRBase family seed
seed	-----------AAGAACA----------------------------------------------------------------------------------	21	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1
	----------TAAGAACATATTGTGGCA------------------------------------------------------------------------	18	9	9	1	1
	----------TAAGAACATATTGTGGCAC-----------------------------------------------------------------------	19	1	-	-	-
rat	aagcaagtctTAAGAACATATTGTGGCAcatgaactaacatttattagcaagcagactgaaatagaattgtgaaacccatttgtttatgtgggtcttgct
	****************************************************************************************************
rat	.((((((.((((.(((((....((((((((....(((.......((((........))))..)))...))))....)))).)))))...)))).))))))	0.470 -18.80

rat

chromosome:X:147028437:147028536:1

intergenic

block2140786 [novel_lenNOK_cloningOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.083	no	no	0.32/0.48	18/23/0.69	0.0	0.0	17	0	3	0	13	21	3arm	1	nd	0.30	4	36	3	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------AUGGAAA-------------------------	21	novel
seed	---------------------------------------------------------------------------UUUAUGG----------------------------	8	novel
seed	--------------------------------------------------------------------------UUUUAUG-----------------------------	2	novel
seed	-------------------------------------------------------------------------------UGGAAAU------------------------	2	novel
seed	--------------------------------------------------------------------------------GGAAAUG-----------------------	2	novel
seed	-------------------------------------------------------------------------CUUUUAU------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T5S1
	-----------------------------------------------------------------------------TATGGAAATGGTGACTAGGA-------------	20	1	-	17
	--------------------------------------------------------------------------TTTTATGGAAATGGTGACT-----------------	19	1	-	4
	--------------------------------------------------------------------------TTTTATGGAAATGGTGACTAGG--------------	22	-	-	3
	-----------------------------------------------------------------------------TATGGAAATGGTGACTAGG--------------	19	-	-	2
	------------------------------------------------------------------------------ATGGAAATGGTGACTAGGA-------------	19	-	-	2
	------------------------------------------------------------------------TCTTTTATGGAAATGGTGACT-----------------	21	-	-	1
	-------------------------------------------------------------------------------TGGAAATGGTGACTAGGATC-----------	20	-	-	1
	-------------------------------------------------------------------------------TGGAAATGGTGACTAGGATCCAC--------	23	-	-	1
	-------------------------------------------------------------------------CTTTTATGGAAATGGTGACT-----------------	20	-	-	1
	-----------------------------------------------------------------------------TATGGAAATGGTGACTAG---------------	18	-	1	-
	-------------------------------------------------------------------------CTTTTATGGAAATGGTGAC------------------	19	-	-	1
rat	ggtttctggaaatttcacggttgtccagtatcttaatgatggatgaatctttagcaaagattaaacccagcctctttTATGGAAATGGTGACTAGGAtccacaggagcca
	**************************************************************************************************************
rat	((((((((...(((((((.(((.((((............(((...((((((.....))))))....)))..........))))))).))))....)))...)))))))).	0.570 -27.85

rat

chromosome:7:96054895:96055004:-1

intergenic

block254328 [novel_lenNOK_cloningOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.512	no	no	0.44/0.50	18/20/0.31	0.5	0.5	16	0	6	0	18	15	3arm	1	nd	0.30	4	16	6	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AAGGUAA------------------------------	9	novel
seed	------------------------------------------------------------------------------AGGUAAG-----------------------------	6	novel
seed	-------------------------------------------------------------------------------GGUAAGG----------------------------	1	novel
		len	cloning frequencies
			T1S1	T2S1	T2S2	T4S1	T5S1	T5S2
	----------------------------------------------------------------------------CAAGGTAAGGTATGGTTCCC------------------	20	-	1	-	1	2	1
	-----------------------------------------------------------------------------AAGGTAAGGTATGGTTCCC------------------	19	1	1	-	-	2	-
	----------------------------------------------------------------------------CAAGGTAAGGTATGGTTCC-------------------	19	-	-	1	-	-	1
	----------------------------------------------------------------------------CAAGGTAAGGTATGGTTC--------------------	18	-	-	-	-	1	1
	-----------------------------------------------------------------------------AAGGTAAGGTATGGTTCC-------------------	18	-	-	-	-	2	-
	------------------------------------------------------------------------------AGGTAAGGTATGGTTCCC------------------	18	-	-	-	-	1	-
rat	gaggtgttttggagagcgttccatagtgactgactcatctatgttccctcagtggttttgaagccaactacaggagCAAGGTAAGGTATGGTTCCCgctttgtcctgggacttt
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000038020 ENSRNOG00000021553 RGD1564507_predicted
rat	(((((.((..((((((((..(((((........((.((((.((((((...(((((((....))))).))...)))))))))).)).)))))....)))))..))).)).)))))	0.500 -30.60

rat

chromosome:13:38502010:38502123:-1

block305558 [novel_lenNOK_cloningOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.097	no	no	0.61/0.63	18/19/0.00	0.0	0.3	10	0	6	0	23	1	3arm	1	nd	0.26	4	10	6	na	na

		reads	miRBase family seed
seed	---------------------------------------------------ACCCAGU----------------------------------	10	novel
		len	cloning frequencies
			T1S1	T1S2	T3S2	T4S1	T4S2	T5S2
	--------------------------------------------------GACCCAGTGGCCTTTACC------------------------	18	2	1	1	1	1	1
	--------------------------------------------------GACCCAGTGGCCTTTACCC-----------------------	19	-	-	-	-	1	2
rat	ggttactaaaacaggaaggctgtggtaccacgggtcccaggggtcagatgGACCCAGTGGCCTTTACCCattcgctttcccctaagtctcta
	********************************************************************************************
rat	((..(((......(((((((((.((((((((((((((............)))))).))))....))))))...)))))))....)))..)).	0.770 -29.70

rat

chromosome:13:45770318:45770409:1

intergenic

block1060927 [novel_lenNOK_cloningOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.075	no	no	0.47/0.54	18/26/0.43	0.0	2.1	12	0	4	0	9	4	3arm	1	nd	0.30	5	21	4	na	na

		reads	miRBase family seed
seed	------------------------------------------------GAGAAUG--------------------------	18	novel
seed	-------------------------------------------------AGAAUGU-------------------------	1	novel
seed	------------------------------------------UGGAAUG--------------------------------	1	novel
seed	-------------------------------------------GGAAUGA-------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T5S1
	-----------------------------------------------TGAGAATGTGTCTTCCCCTC--------------	20	1	-	-	7
	-----------------------------------------------TGAGAATGTGTCTTCCCCTCCTACC---------	25	-	1	-	5
	-----------------------------------------------TGAGAATGTGTCTTCCCCT---------------	19	-	-	-	2
	-----------------------------------------CTGGAATGAGAATGTGTCTTCCCCTC--------------	26	-	1	-	-
	-----------------------------------------------TGAGAATGTGTCTTCCCC----------------	18	1	-	-	-
	------------------------------------------TGGAATGAGAATGTGTCTTCCCCTCC-------------	26	-	-	1	-
	------------------------------------------------GAGAATGTGTCTTCCCCTCCTACCTC-------	26	-	-	-	1
	-----------------------------------------------TGAGAATGTGTCTTCCCCTCCT------------	22	-	-	-	1
rat	gagcttttagcttttgaagttggcacattctgttttctgggctggaaTGAGAATGTGTCTTCCCCTCCTACCtcaagcttg
	*********************************************************************************
rat	((((((.(((.....((((...(((((((((..((((......))))..))))))))))))).....)))....)))))).	0.540 -21.60

rat

chromosome:20:5521580:5521660:-1

intergenic

novel_mirtron_nonpairedHIGH_bulgeHIGH (109 loci)

block6079 [novel_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.044	no	no	0.50/0.50	24/24/1.00	0.0	0.0	1	0	1	0	20	14	3arm	2	0	0.46	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------CUGACAU------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	-------------------------------------------------------------------------TCTGACATCCCATGTCTTCCTCAG--------------------	24	1
rat	gtgaagccttttaagtctatgggggaaaagggttccccagtgtccccttgtctcaatctgaggcctggagaccTCTGACATCCCATGTCTTCCTCAGagcttcctggagtcttggca
	*********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000021680 ENSRNOG00000016026
rat	((.(((.((((.((((((..((..((...(((.....(((.(((.((..(((((.....)))))..)).)))..)))....)))...))..))..))).)))...)))).))).)).	0.970 -39.80

rat

chromosome:10:13203268:13203384:-1

Same_strand|Intronic_non-coding|ENSRNOT00000021680|ENSRNOG00000016026 ## ENSRNOG00000016026|protein_coding||

block26728 [novel_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.196	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	3	3arm	1	0	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------CACAUUU-------------------	1	novel
		len	cloning frequencies
			T1S1
	-------------------------------------------TCACATTTTCCGTCCTGCCAG------	21	1
rat	ggaaaagggcgctggagctcaggtatgttgcggcatgaaaatgTCACATTTTCCGTCCTGCCAGgtttcc
	**********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>	ENSRNOT00000056525 ENSRNOG00000015801 Spns2
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>	ENSRNOT00000021234 ENSRNOG00000015801 Spns2
rat	(((((..((((..(((.....((.....((.(((((....))))).))....)).)))))))...)))))	0.640 -21.70

rat

chromosome:10:59341485:59341554:-1

block29180 [novel_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.596	no	no	0.48/0.52	21/23/1.00	0.0	0.4	5	0	2	0	17	6	3arm	1	2	0.35	4	5	2	na	na

		reads	miRBase family seed
seed	---------------------------------------------------ACAUAAG--------------------------------	5	novel
		len	cloning frequencies
			T1S1	T1S2
	--------------------------------------------------TACATAAGCCTCCTTTGCTCCCC-----------------	23	3	1
	--------------------------------------------------TACATAAGCCTCCTTTGCTCC-------------------	21	-	1
rat	cacctccccctggttggggagcgcggtgcagtaggcagtggtctcagcccTACATAAGCCTCCTTTGCTCCCCaggtcctggctgctgtg
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000015535 ENSRNOG00000011452 Aldoc
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000046388 ENSRNOG00000011452 Aldoc
rat	(((.....((.((.(((((((((.((.((.(((((...((....))..)))))....))..))..)))))))))...)).)).....)))	0.930 -29.40

rat

chromosome:10:64309905:64309994:-1

block38064 [novel_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.176	no	no	0.76/0.76	21/21/1.00	0.0	0.0	1	0	1	0	12	0	5arm	1	0	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------------UCCUGUC-------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	------------CTCCTGTCCCCCTGCCCGCAG------------------------------------	21	1
rat	gtcaagtcctgaCTCCTGTCCCCCTGCCCGCAGattctgactcaggaagactggaataaagtcctctac
	*********************************************************************
	++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000041615 ENSRNOG00000002981 Cacna1g
	++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000004004 ENSRNOG00000002981 Cacna1g
	++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000051536 ENSRNOG00000002981 Cacna1g
	++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000055597 ENSRNOG00000002981 Cacna1g
	++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000055596 ENSRNOG00000002981 Cacna1g
rat	((..((..((...(((.(((..((((....(((...)))...))))..))).)))....))..))..))	0.410 -15.70