other hairpins
novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH (106 loci)
block2090842 [novel_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.451 | no | no | 0.35/0.47 | 19/25/0.50 | 0.0 3.5 0.0 | 0.0 3.5 0.0 | 1 4 1 | 0 0 0 | 1 2 1 | 0 0 0 | 13 19 35 | 12 -4 -10 | 5arm 5arm_loop 5arm_loop | 5 10 11 | nd nd nd | 0.42 0.32 0.63 | 3 3 11 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------CCAGUUA------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------CUUGACA------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------CAUGAUU--------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------ACUUGAC------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------GACAUGA--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------GAAACUC---------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| -------------------TACTTGACATGAAACTCCATGA----------------------------------------------------------------------------- | 22 | - | - | 1 | |
| -----------------------TGACATGAAACTCCATGATTCAAAG---------------------------------------------------------------------- | 25 | - | - | 1 | |
| ----------------------------TGAAACTCCATGATTCAAAG---------------------------------------------------------------------- | 20 | - | - | 1 | |
| -----------------------------------CCATGATTCAAAGCCTGTC---------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------TCCAGTTACTTGACATGAA-------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| --------------------ACTTGACATGAAACTCCATGA----------------------------------------------------------------------------- | 21 | 1 | - | - | |
| rat | ttttttgggggatTCCAGTTACTTGACATGAAACTCCATGATTCAAAGCCTGTCcataatgttagaatctggagaagtcacagtctacatattaacttcacatttcattacctgggaa | ||||
| ********************************************************************************************************************** | |||||
| rat | .((((..((.((....(((((...(((.(((..(((((.(((((....................))))))))))...)))..))).......))))).......))....))..)))) | 0.470 -21.25 | |||
| rat | chromosome:7:18802674:18802791:-1 | intergenic |
novel_lenNOK_multiarm (106 loci)
block180873 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.50/0.56 | 18/21/0.20 | 0.8 0.0 | 0.8 0.0 | 4 1 | 0 0 | 3 1 | 0 0 | 20 26 | 1 -5 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.11 0.33 | 2 5 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------UGCUACC----------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------GUGCUAC------------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------------------------CCGUAGA------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------CUACCGU--------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T3S1 | T3S2 | |||
| ---------------------GTGCTACCGTAGATCACAG------------------------------------------------------------ | 19 | - | - | 2 | - | |
| --------------------AGTGCTACCGTAGATCAC-------------------------------------------------------------- | 18 | - | - | - | 1 | |
| -----------------------GCTACCGTAGATCACAGG----------------------------------------------------------- | 18 | 1 | - | - | - | |
| --------------------------ACCGTAGATCACAGGCTTCTC----------------------------------------------------- | 21 | - | 1 | - | - | |
| rat | cggtgcacattctgtccccgAGTGCTACCGTAGATCACAGGCTTCTCgcctgttgccccgagacatctgctatttagcgtcggggtcggatctctgactt | |||||
| **************************************************************************************************** | ||||||
| rat | .(((.((...((((.((((((.(((((..(((((((((((((.....))))).)).........))))))....))))))))))).))))....))))). | 0.670 -35.90 | ||||
| rat | chromosome:12:8421142:8421241:-1 | intergenic ## {SimpF: oe = 0.85 -1 CpG} |
block996110 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.39/0.42 | 19/23/0.20 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 21 27 | 3 -7 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.26 0.30 | 3 3 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------GGGCAUG------------------------------------------------------------------------ | 4 | novel | |
| seed | ----------------------------GAGCAAA------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ---------------------TGGGCATGAGCAAAACTTT------------------------------------------------------------- | 19 | 3 | 1 | |
| ---------------------------TGAGCAAAACTTTTCCATAGGAC--------------------------------------------------- | 23 | 1 | - | |
| rat | ggtgaccaaagcaggaagtccTGGGCATGAGCAAAACTTTTCCATAGGACaagaagtatcccctcttttgtgaactgctaggacctcttgttcgtcctcca | |||
| ***************************************************************************************************** | ||||
| rat | ((.(((...(((((((.(((((.((((...(((((((((.(((...))).)))............))))))....))))))))).))))))).)))..)). | 0.600 -29.00 | ||
| rat | chromosome:1:124846147:124846247:1 | intergenic |
block1414135 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.410 | no | no | 0.45/0.48 | 19/25/0.40 | 0.0 1.0 | 0.0 0.2 | 1 4 | 0 0 | 1 1 | 0 0 | 30 13 | -22 3 | 5arm_loop_3arm 3arm | 1 2 | nd nd | 0.36 0.19 | 4 2 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------GAAGACU------------------------ | 2 | novel |
| seed | -----------------------------------------CUGAAGA-------------------------- | 2 | novel |
| seed | -------------------------------GAUCAGU------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------TGAAGACTCTCTGGTACAG------------- | 19 | 2 | |
| ----------------------------------------TCTGAAGACTCTCTGGTACA-------------- | 20 | 1 | |
| ------------------------------TGATCAGTCCTCTGAAGACTCTCTG------------------- | 25 | 1 | |
| ----------------------------------------TCTGAAGACTCTCTGGTACAG------------- | 21 | 1 | |
| rat | ccaggatggctggctggggtagatttccagTGATCAGTCCTCTGAAGACTCTCTGGTACAGctttcatcgaggc | ||
| ************************************************************************** | |||
| rat | ((..((((((((((..(((.((.(((.(((.((....))..))).))))))))..)).))))...))))..)). | 0.860 -21.00 |
| rat | chromosome:3:141691018:141691091:-1 | intergenic |
sblock10080 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.35/0.52 | 19/21/0.60 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 0 43 17 0 | 45 1 6 24 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.80 0.24 0.20 0.28 | 16 1 2 3 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------------------GGAAAGU----------- | 2 | novel | |
| seed | -UAUCAUA------------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------GCUGCUG----------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------------AAAUCAC----------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------------------------------------------------------------------TGGAAAGTGGTTTCTCTTT | 19 | 2 | - | |
| TTATCATACATCACTGTGAG------------------------------------------------------------------------------------------------ | 20 | - | 1 | |
| -------------------------------------------------------------------------------TAAATCACAGGGGAGTACTG----------------- | 20 | 1 | - | |
| -------------------------------------------AGCTGCTGTTGACTGTGGTGA---------------------------------------------------- | 21 | 1 | - | |
| rat | TTATCATACATCACTGTGAGaggctactgaaccagctggtacaAGCTGCTGTTGACTGTGGTGAatgctttccttcccaTAAATCACAGGGGAGTACTGGAAAGTGGTTTCTCTTT | |||
| ******************************************************************************************************************** | ||||
| rat | .................(((((((((((.......(((((((...((.(((.(((.(((((.(((........))))))))..)))))).)).)))))))..)))))))))))... | 0.700 -35.40 | ||
| rat | chromosome:6:122556801:122556916:-1 | intergenic |
sblock10182 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.79/0.84 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 35 13 | 3 25 | 5arm 3arm | 2 2 | nd nd | 0.32 0.26 | 2 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------CCCCAGG--------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------CGCACCC------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| --------------------------------------------------------------------------------------CCGCACCCGGCGCCCAGCT------------- | 19 | - | 1 | |
| -----------------------------------GCCCCAGGAGCTGCTCCGC---------------------------------------------------------------- | 19 | 1 | - | |
| rat | ccaggcccgcgggtcgcgcggcgggtcggcccgagGCCCCAGGAGCTGCTCCGCgtgcccgcgcgggggtggccctgagtcaccggCCGCACCCGGCGCCCAGCTcgacgcatctggc | |||
| ********************************************************************************************************************** | ||||
| rat | (((((..(((((((...(((.((((((((((...(((..((((.((..((((.((((....))))))))..)))))).)))...))))).))))).)))...))))).))..))))). | 1.000 -70.30 | ||
| rat | chromosome:6:136931786:136931903:-1 | intergenic ## {SimpF: -1 Eponine} |
sblock10288 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.123 | no | no | 0.56/0.58 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 6 30 | 19 1 | 5arm 3arm | 1 1 | nd nd | 0.28 0.32 | 3 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------CUCUGUG----------------------------------------- | 1 | novel | |
| seed | -------GGUGUGA------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T4S2 | |||
| -------------------------------------------------TCTCTGTGTCTGCACCGGT------------------------------ | 19 | 1 | - | |
| ------TGGTGTGACTTCGGGAAG-------------------------------------------------------------------------- | 18 | - | 1 | |
| rat | ggctgaTGGTGTGACTTCGGGAAGaggatctgtctcacgaggagaacatTCTCTGTGTCTGCACCGGTcctgattcctgcatcgcaggattgttggtt | |||
| ************************************************************************************************** | ||||
| rat | .(((((..((((((...((((((.(((((((((..((((((((.....))))).)))...)))..))))))..))))))..))))...))..))))). | 0.830 -32.30 | ||
| rat | chromosome:6:53977396:53977493:1 | intergenic |
sblock10360 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.665 | no | no | 0.61/0.65 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 44 4 | 0 29 | 5arm 3arm | 1 1 | nd nd | 0.35 0.17 | 3 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------GCUGUGA------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------------------------------------------UGGGUGG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| --------------------------------------------CGCTGTGACTCTTCGCTCGG------------------------------------------------------ | 20 | 1 | - | |
| ------------------------------------------------------------------------------------------------TTGGGTGGCCCAACCTTG---- | 18 | - | 1 | |
| rat | gcgcaaccacgtggttcaggtgactctcagtgccccgccccctcCGCTGTGACTCTTCGCTCGGtgccctagcggtcgttagtgtggactggccacTTGGGTGGCCCAACCTTGcgtg | |||
| ********************************************************************************************************************** | ||||
| rat | ((((((......((((..(((.((((..((((....(((...(((((..((((...(((((.((...)).)))))..))))..)))))..))))))).)))).))).)))))))))). | 0.800 -42.20 | ||
| rat | chromosome:6:111872279:111872396:1 | intergenic |
sblock10415 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.204 | no | no | 0.33/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 40 8 | 3 21 | 5arm 3arm | 1 1 | nd nd | 0.11 0.22 | 1 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------AAGAGGA------------------ | 1 | novel | |
| seed | -----------------------------------------UUGCCUU------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ----------------------------------------CTTGCCTTATTTTTTTGG--------------------------------------------------------- | 18 | - | 1 | |
| -----------------------------------------------------------------------------------------TAAGAGGAAAGGACCCCT-------- | 18 | 1 | - | |
| rat | ctccaggttccaggagtcttggtcatctttaaaaattgttCTTGCCTTATTTTTTTGGcagacttaaattgttatgaaaaagaaggaagTAAGAGGAAAGGACCCCTagaaggga | |||
| ******************************************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000047324 ENSRNOG00000011141 Serpina12 | |||
| ----------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000015516 ENSRNOG00000011141 Serpina12 | |||
| rat | .(((...(((.(((.(((((..((.((((...........(((.((((.((((((((((((.......)))))).)))))).))))))).)))).)).))))).))).))).))) | 0.760 -25.90 | ||
| rat | chromosome:6:128040207:128040321:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000057304|ENSRNOG00000011141 ## Opposite_strand|Intronic_coding|ENSRNOT00000047324|ENSRNOG00000011141 ## ENSRNOG00000011141|protein_coding|Serpina12|Serpin A11 precursor (Liver regeneration-related protein LRRG023). [Source:UniProtKB/Swiss-Prot;Acc:Q7TPA5] |
sblock10420 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.749 | no | no | 0.47/0.83 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 3 22 | 34 15 | 5arm 3arm | 1 1 | nd nd | 0.72 0.21 | 10 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------UUCUGGU--------------------------------- | 2 | novel | |
| seed | ----GUCCCCA--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ---------------------------------------------------------------------------ATTCTGGTGTCTGTGCTGT---------------------- | 19 | 2 | - | |
| ---CGTCCCCACCCCGCCCCA----------------------------------------------------------------------------------------------- | 18 | - | 1 | |
| rat | gcaCGTCCCCACCCCGCCCCAgcagctgaggcacagagggaatcaggagatgttcagtctgggcattcacgggtcATTCTGGTGTCTGTGCTGTaaattggtttagatgttgtgcc | |||
| ******************************************************************************************************************** | ||||
| rat | (((((..........(((...(((((..((((((((((.((.((..((.((((((.....))))))))..)).)).))))).)))))..))))).....)))........))))). | 0.970 -33.17 | ||
| rat | chromosome:6:129642584:129642699:1 | intergenic |
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