other hairpins
novel_lenNOK_multiarm (106 loci)
sblock8983 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.355 | no | no | 0.50/0.58 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 42 | 21 3 | 5arm 3arm | 1 1 | nd nd | 0.05 0.44 | 1 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UGGACAU---------------------------------------------------- | 1 | novel |
| seed | ---GUGGGAG------------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----------------------------------------------------------GTGGACATCTTGGACCAA------------------------------------------ | 18 | 1 | |
| --TGTGGGAGTGAGGAGATGG------------------------------------------------------------------------------------------------- | 19 | 1 | |
| rat | gcTGTGGGAGTGAGGAGATGGggctgggggtccatgcttagctgaacaaccaaatgctGTGGACATCTTGGACCAAgctaaagtccccatgacaaggcctctctggcttctgacggtc | ||
| ********************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033730 ENSRNOG00000018317 RGD1563580_predicted | ||
| rat | (((((((((((.(((((((((((((...((((((((((((((.............)))).)).))...)))))).......)).))))))........))).)).)))))).))))). | 0.420 -38.92 |
| rat | chromosome:4:121147111:121147228:1 | Same_strand|Intronic_non-coding|ENSRNOT00000033730|ENSRNOG00000018317 ## Same_strand|Boundary_non-coding|ENSRNOT00000043082|ENSRNOG00000018317 ## ENSRNOG00000018317|protein_coding|RGD1563580_predicted|AP2-associated protein kinase 1 (EC 2.7.11.-) (Adaptor-associated kinase 1). [Source:UniProtKB/Swiss-Prot;Acc:P0C1X8] |
sblock9223 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.146 | no | no | 0.45/0.61 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 22 | 26 4 | 5arm 3arm | 1 2 | nd nd | 0.30 0.39 | 2 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------GCCCAGG-------------------------------- | 1 | novel |
| seed | --------GCAGUUA---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -------AGCAGTTAGACATCGCTAAG---------------------------------------------------------------------------- | 20 | 1 | |
| ---------------------------------------------------------------AGCCCAGGGCACAAAGAG---------------------- | 18 | 1 | |
| rat | agccggaAGCAGTTAGACATCGCTAAGcaagttgcgcccactaggaagaagctccacaaagacAGCCCAGGGCACAAAGAGccaggagtcagctggtcttggc | ||
| ******************************************************************************************************* | |||
| rat | .((((((..(((((.(((.((.((..((...(((.((((....((......((......))....))..)))).)))...)).)))))))))))).))).))) | 0.720 -27.90 |
| rat | chromosome:4:182768553:182768655:1 | intergenic |
sblock9264 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.393 | no | no | 0.63/0.84 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 22 | 26 0 | 5arm 3arm | 1 1 | nd nd | 0.47 0.16 | 7 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------CGUCGCC--------------------------------- | 1 | novel | |
| seed | -AUGCUGG------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| CATGCTGGGATCAGTCCCC------------------------------------------------------------------------- | 19 | 1 | - | |
| ---------------------------------------------------CCGTCGCCGACCGCCTCGG---------------------- | 19 | - | 1 | |
| rat | CATGCTGGGATCAGTCCCCggtccaaggccgttcggtttggctggtctgttCCGTCGCCGACCGCCTCGGgatccgtgggaacgtgtgcggc | |||
| ******************************************************************************************** | ||||
| rat | ...((((.......((((((((((.((((.((.((((..(((.((......))))))))))).))))..))).))).)))).......)))) | 0.960 -36.44 | ||
| rat | chromosome:5:24918145:24918236:-1 | intergenic |
sblock9302 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.140 | no | no | 0.53/0.74 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 19 36 6 | 22 1 30 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.28 0.32 | 4 2 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------------UUGCCCA----------------- | 1 | novel | |
| seed | --------------------CGGGCGU------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------CGGACAG---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| ----------------------------------------------------------------CCGGACAGGGAAACTTCC------------------------------------ | 18 | 1 | - | |
| ---------------------------------------------------------------------------------------------ATTGCCCAAGGTTAGGCTC------ | 19 | - | 1 | |
| -------------------GCGGGCGTTCGCAAGGGAC-------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | ccggaaggggagcgcggcaGCGGGCGTTCGCAAGGGACgccgggagtctctgtgtctagcggcgCCGGACAGGGAAACTTCCttagctttgcaATTGCCCAAGGTTAGGCTCcgccgg | |||
| ********************************************************************************************************************** | ||||
| rat | ((((....(((((..(((...(((((...((((((......((((((.(((.((((..((...))..)))).))).))))))....))))))...)))))...)))..))))).)))) | 0.500 -52.80 | ||
| rat | chromosome:5:51396006:51396123:-1 | intergenic |
sblock9320 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.377 | no | no | 0.47/0.72 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 30 | 22 8 | 5arm 3arm | 2 2 | nd nd | 0.22 0.42 | 2 6 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----GCUGGCU--------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------CAGACAC----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| --------------------------------------------------------------TCAGACACAGACAGAACGT------------------------------ | 19 | - | 1 | |
| ----AGCTGGCTGGGTGGGCTG----------------------------------------------------------------------------------------- | 18 | 1 | - | |
| rat | cgagAGCTGGCTGGGTGGGCTGgaccaggctcttgtctggaggacacaaaagaatcctaggaTCAGACACAGACAGAACGTgggggatgggccacgtcacgtttgccttga | |||
| *************************************************************************************************************** | ||||
| rat | ((((.((..(((((((((.(((..((..((((((((((((((((..........))))....))))))).)))......))..))..))).)))).))).))..)))))). | 0.450 -35.20 | ||
| rat | chromosome:5:60936001:60936111:-1 | intergenic |
sblock9590 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.255 | no | no | 0.63/0.71 | 19/21/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 30 7 | 8 28 | 5arm 3arm | 1 1 | nd nd | 0.21 0.38 | 2 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------GGUGCCG------------------------------------------------------------------------------ | 2 | novel | |
| seed | -----------------------------------------------------------------------------------------CUGCGGC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ------------------------------AGGTGCCGTCTCCTTACGC------------------------------------------------------------------- | 19 | - | 2 | |
| ----------------------------------------------------------------------------------------TCTGCGGCTCCGGCTCCTTCC------- | 21 | 1 | - | |
| rat | cgccggcgcagtggccgcgccgctgtcgccAGGTGCCGTCTCCTTACGCcgctccgccgggtggccggctgaggctgcggccccgcgcTCTGCGGCTCCGGCTCCTTCCgcggcga | |||
| ******************************************************************************************************************** | ||||
| rat | ((((.(((.((..((((.(((((...(((..((.(((((..(((((.((((..((((...)))).)))))))))..))))))).)))....)))))..))))..))..))))))). | 0.970 -64.10 | ||
| rat | chromosome:5:157741112:157741227:-1 | intergenic |
sblock9672 [novel_lenNOK_multiarm]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.204 | no | no | 0.44/0.58 | 18/21/0.33 | 0.0 0.0 | 1.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 26 13 | 0 26 | 5arm 3arm | 1 1 | nd nd | 0.28 0.63 | 3 12 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------CACAGGU--------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------------------UGCUCCG------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| --------------------------GCACAGGTTTACAGTCTT----------------------------------------------------------------- | 18 | - | 1 | |
| -----------------------------------------------------------------------------TTGCTCCGTCCTCACAGAG------------- | 19 | 1 | - | |
| --------------------------GCACAGGTTTACAGTCTTTGC-------------------------------------------------------------- | 21 | - | 1 | |
| rat | ggctattgtttttgcttctcaaatctGCACAGGTTTACAGTCTTTGCttttgttaaaagtctgaattgctttgctatTTGCTCCGTCCTCACAGAGgcattcagtctct | |||
| ************************************************************************************************************* | ||||
| rat | ((..((((....((((((((((((..(((.((((...(((.((((((....))..)))).)))....))))))).)))))............)))))))..))))..)) | 0.620 -20.80 | ||
| rat | chromosome:5:25017141:25017249:1 | intergenic |
novel_lenNOK_mirtron_nonpairedHIGH_bulgeHIGH (99 loci)
block7125 [novel_lenNOK_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.259 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 27 | 5arm | 1 | 2 | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------GCCCUUA---------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ----------------GGCCCTTAACACACAGCC------------------------------------------------------------------------------------ | 18 | 1 | |
| rat | ggactgtctactgcacGGCCCTTAACACACAGCCcgcaggtggttcgagcacatcagcatgctggtcatcatgctgaactgcgtgacactgggcatgttcaggccctgtgaggatgtt | ||
| ********************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048392 ENSRNOG00000033893 Cacna1h | ||
| +++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000043626 ENSRNOG00000033893 Cacna1h | ||
| rat | .(((.((((...(((.((((...((((....((((...((((..(((.(((..((((((((........))))))))..))).))))))))))).))))..)))).)))..))))))) | 0.980 -39.60 |
| rat | chromosome:10:14644324:14644441:-1 | Same_strand|Boundary_coding|ENSRNOT00000043626|ENSRNOG00000033893 ## Same_strand|Boundary_non-coding|ENSRNOT00000060323|ENSRNOG00000033893 ## ENSRNOG00000033893|protein_coding|Cacna1h|Voltage-dependent T-type calcium channel subunit alpha-1H (Voltage- gated calcium channel subunit alpha Cav3.2). [Source:UniProtKB/Swiss-Prot;Acc:Q9EQ60] |
block43390 [novel_lenNOK_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.468 | no | no | 0.68/0.73 | 19/22/0.67 | 0.3 | 2.3 | 3 | 0 | 2 | 0 | 5 | 5 | 3arm | 1 | 0 | 0.47 | 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------CCCCACU-------------------- | 2 | novel | |
| seed | ------------------------------------------------CCCACUG------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| -----------------------------------------------CCCCACTGTCTCCACCCCCAGC----- | 22 | - | 1 | |
| ----------------------------------------------ACCCCACTGTCTCCACCCCCAG------ | 22 | - | 1 | |
| ----------------------------------------------ACCCCACTGTCTCCACCCC--------- | 19 | 1 | - | |
| rat | gtgaagagntcctggaaaccacagcctggcagctgagccaccggccACCCCACTGTCTCCACCCCCAGCtccac | |||
| ************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000055179 ENSRNOG00000022071 LOC685269 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000036112 ENSRNOG00000022071 LOC685269 | |||
| rat | (((.((......((((....((((...((..((((......))))..))...)))).)))).......)).))) | 0.680 -15.22 | ||
| rat | chromosome:10:91561116:91561189:-1 | Same_strand|Boundary_coding|ENSRNOT00000036112|ENSRNOG00000022071 ## ENSRNOG00000022071|protein_coding|LOC685269| |
block122806 [novel_lenNOK_mirtron_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 16 | 5arm | 1 | 2 | 0.37 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------GGGUAAU-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---------AGGGTAATGCTGTTTCTCC--------------------------------------------------------------- | 19 | 1 | |
| rat | agacaactcAGGGTAATGCTGTTTCTCCactcttggaaggaaaaggttccttattttcctttaatcaagaaattttgctttcagatgatct | ||
| ******************************************************************************************* | |||
| >>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049859 ENSRNOG00000001627 RGD1562717_predicted | ||
| >>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047817 ENSRNOG00000001627 RGD1562717_predicted | ||
| >>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002220 ENSRNOG00000001627 RGD1562717_predicted | ||
| >>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002223 ENSRNOG00000001627 RGD1562717_predicted | ||
| rat | (((((.((.(((((((....((((((.........(((((((((.........))))))))).....)))))).))))))).)).)).))) | 0.580 -18.04 |
| rat | chromosome:11:44888511:44888601:-1 | Same_strand|Boundary_coding|ENSRNOT00000002223|ENSRNOG00000001627 ## ENSRNOG00000001627|protein_coding|RGD1562717_predicted| |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30203 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.