other hairpins
novel_mirtron_nonpairedHIGH (97 loci)
block2674113 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.254 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 30 | 3arm | 1 | 3 | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------CCCCACC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----------------------------------------------------------------------------------------------TCCCCACCCCCCTTTTATTTT----- | 21 | 1 | |
| rat | ctttgatgtataaggtgggtttgaggtagtcaatgtctttgcagtcttgatggagcttatgtcttaaatcccttttaattcaatccgtgtctctTCCCCACCCCCCTTTTATTTTcaggt | ||
| ************************************************************************************************************************ | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000004814 ENSRNOG00000003261 Usp9x_predicted | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000048980 ENSRNOG00000003261 Usp9x_predicted | ||
| rat | .(((((.(((.((((.((((..((((.((.((......(((.(((...((.(((..(((.....))).))).))...))))))....)).))))))...)))).)))).)))..))))). | 0.410 -23.80 |
| rat | chromosome:X:21646501:21646620:-1 | Same_strand|Intronic_coding|ENSRNOT00000004814|ENSRNOG00000003261 ## ENSRNOG00000003261|protein_coding|Usp9x_predicted| |
block2925574 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.249 | no | no | 0.35/0.35 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | 2 | 5arm | 1 | 1 | 0.39 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------UAAGUAA-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------GTAAGTAATGACAAACTGCAAAC----------------------------------------- | 23 | 1 | |
| rat | gtggtgtccctgGTAAGTAATGACAAACTGCAAACtgggtcagtgttcttgtctagttcccacttgggcactcata | ||
| **************************************************************************** | |||
| >>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000036352 ENSRNOG00000027149 Rpl10 | ||
| rat | (((((((((.(((.((.((..(((((...((..((((...))))))..))))))).)).)))...)))))).))). | 0.510 -19.50 |
| rat | chromosome:X:160337891:160337966:-1 | Same_strand|Boundary_coding|ENSRNOT00000036352|ENSRNOG00000027149 ## ENSRNOG00000027149|protein_coding|Rpl10|ribosomal protein L10 (Rpl10), mRNA [Source:RefSeq_dna;Acc:NM_031100] |
block2950865 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 8 | 5arm | 2 | 0 | 0.35 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------UCCAUCU------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------------GTCCATCTTTTCTCTTGCAG------------------------------------------------ | 20 | 1 | |
| rat | agagcacaatgatgctagtGTCCATCTTTTCTCTTGCAGtagtgatggcttcatcgtctgtatggagagtgtcacagcttgtctctg | ||
| *************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000007015 ENSRNOG00000004903 Ebp | ||
| rat | ((((.((((....(((.(((..((.((((((...(((((...(((((....))))).))))).)))))))).)))))))))))))). | 1.000 -25.80 |
| rat | chromosome:X:26336038:26336124:1 | Same_strand|Intronic_coding|ENSRNOT00000007015|ENSRNOG00000004903 ## ENSRNOG00000004903|protein_coding|Ebp|3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase (EC 5.3.3.5) (Cholestenol Delta-isomerase) (Delta(8)-Delta(7) sterol isomerase) (D8-D7 sterol isomerase) (Emopamil-binding protein) (Sterol 8- isomerase). [Source:UniProtKB/Swiss-Prot;Acc:Q9JJ46] |
block3025550 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.488 | no | no | 0.65/0.65 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 5 | 5arm | 1 | 1 | 0.35 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------CUCUUGC-------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------TCTCTTGCTCCCCTCCCCCA-------------------------------------------------- | 20 | 1 | |
| rat | agcctcttcaTCTCTTGCTCCCCTCCCCCAgggatgttctgttcttgaaggattgtgtgggctcagaagtagagaatgcc | ||
| ******************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000003390 ENSRNOG00000002467 Pgk1 | ||
| rat | .((.(((..((.(((.((((...(((..(((((((.....)))))))..)))......))))..))).))..)))..)). | 0.940 -18.80 |
| rat | chromosome:X:94331270:94331349:1 | Same_strand|Intronic_coding|ENSRNOT00000003390|ENSRNOG00000002467 ## ENSRNOG00000002467|protein_coding|Pgk1|Phosphoglycerate kinase 1 (EC 2.7.2.3). [Source:UniProtKB/Swiss-Prot;Acc:P16617] |
block3109804 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.832 | no | no | 0.48/0.48 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 3 | 3arm | 1 | 1 | 0.35 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------UCCUUAA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -----------------------------------------TTCCTTAACCAAGTGTGTGCAGC--------- | 23 | 1 | |
| rat | ttcactgttgtcttaaatatatgcagagatgagggcagcccTTCCTTAACCAAGTGTGTGCAGCtacctgaag | ||
| ************************************************************************* | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000001171 ENSRNOG00000000879 Slc9a6_predicted | ||
| rat | ((((..(((((.....((((.((..(((..(((((...))))).)))...)).))))..)))))....)))). | 0.980 -12.30 |
| rat | chromosome:X:141195396:141195468:1 | Same_strand|Boundary_coding|ENSRNOT00000001171|ENSRNOG00000000879 ## ENSRNOG00000000879|protein_coding|Slc9a6_predicted| |
block3194555 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.412 | no | no | 0.67/0.71 | 21/24/1.00 | 0.3 | 1.3 | 3 | 0 | 2 | 0 | 17 | 17 | 5arm | 1 | 0 | 0.33 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------UGAGCAC--------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------GAGCACC-------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S2 | |||
| ------------------TGAGCACCCTGGCCCCCTAGA------------------------------------------------------------------------------- | 21 | 1 | - | |
| -----------------CTGAGCACCCTGGCCCCCTAG-------------------------------------------------------------------------------- | 21 | - | 1 | |
| -----------------CTGAGCACCCTGGCCCCCTAGATC----------------------------------------------------------------------------- | 24 | - | 1 | |
| rat | agggatccagagcctctCTGAGCACCCTGGCCCCCTAGATCgtgtacttcactgctacattcccctacgtggtcctcgttgtgctgctggtgcgaggggtgctgctgcctggagccct | |||
| ********************************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000025702 ENSRNOG00000032701 Slc6a8 | |||
| rat | ((((.(((((.((.......((((((((.((...((((.....((((......(((((..........))))).......))))..)))).))..))))))))...))))))).)))) | 0.600 -40.82 | ||
| rat | chromosome:X:159576096:159576213:1 | Same_strand|Boundary_coding|ENSRNOT00000025702|ENSRNOG00000032701 ## ENSRNOG00000032701|protein_coding|Slc6a8|Sodium- and chloride-dependent creatine transporter 1 (CT1) (Creatine transporter 1) (CHOT1) (Solute carrier family 6 member 8). [Source:UniProtKB/Swiss-Prot;Acc:P28570] |
block3194834 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.61/0.62 | 21/23/1.00 | 0.0 | 1.0 | 2 | 0 | 1 | 0 | 21 | 9 | 3arm | 1 | 1 | 0.33 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------GCUCAGG------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------------------TGCTCAGGAGCCCTACTTCCCCA--------------------- | 23 | 1 | |
| ----------------------------------------------------------------TGCTCAGGAGCCCTACTTCCC----------------------- | 21 | 1 | |
| rat | gcaccctgccacagtttgtggtgagtgtgcgcccctggtggatgggctgcatgctgcaggcccaTGCTCAGGAGCCCTACTTCCCCAggtgcagatgggcaatgtgcg | ||
| ************************************************************************************************************ | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000056397 ENSRNOG00000037291 Plxnb3_predicted | ||
| rat | ((((..((((...((((((((..((((...((.((((((..(((((((((.....)))).))))))).)))).))..))))..)).....)))))).))))..)))). | 0.540 -47.00 |
| rat | chromosome:X:159689733:159689840:1 | Same_strand|Intronic_coding|ENSRNOT00000056397|ENSRNOG00000037291 ## ENSRNOG00000037291|protein_coding|Plxnb3_predicted| |
block2295142 [novel_mirtron_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 7 | 3arm | 1 | 0 | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------CCCUCCU--------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------------------TCCCTCCTACTCTGTCCCTCAG------------------------- | 22 | 1 | |
| rat | ggcagagaactgaccctgagtgttcgtgaggcagatggtggaggacgaggggatcgtggctctttaaaatTCCCTCCTACTCTGTCCCTCAGaagccaaccacgggtctgctagcca | ||
| ********************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000013243 ENSRNOG00000009850 St3gal4 | ||
| rat | (((..((....(((((((.(((((..(((((.....((..(((...((((((((..(((....)))..))))))))...)))..)))))))..)))..)))).)))))..)).))). | 1.000 -42.50 |
| rat | chromosome:8:34847275:34847391:-1 | Same_strand|Intronic_coding|ENSRNOT00000013243|ENSRNOG00000009850 ## ENSRNOG00000009850|protein_coding|St3gal4|CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase (EC 2.4.99.-) (Beta-galactoside alpha-2,3-sialyltransferase) (Alpha 2,3-sialyltransferase IV) (Alpha 2,3-ST) (SIAT4-C). [Source:UniProtKB/Swiss-Prot;Acc:P61131] |
novel_multiarm_DicerNOK_loopOverlap (91 loci)
block621739 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.45/0.57 | 18/21/0.80 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 1 1 1 1 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 2 10 15 23 11 | 2 -6 -12 -20 -1 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.25 0.55 0.52 0.57 0.28 | 2 7 8 8 3 | 5 | 4 | 0 | 2 |
| reads | miRBase family seed | |||||
| seed | -----------UUCCGAC------------------------------------------ | 1 | novel | |||
| seed | ----------------ACUUUCC------------------------------------- | 1 | novel | |||
| seed | ---UGGCUGU-------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------UGGCAGA--------------------- | 1 | novel | |||
| seed | ------------------------GGUAAAG----------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T3S2 | T5S2 | |||
| ---------------GACTTTCCGGGTAAAGATGGC------------------------ | 21 | - | - | 1 | - | |
| -----------------------GGGTAAAGATGGCAGAACGCG---------------- | 21 | - | 1 | - | - | |
| -------------------------------ATGGCAGAACGCGGTTAC----------- | 18 | - | - | - | 1 | |
| ----------ATTCCGACTTTCCGGGTAAA------------------------------ | 20 | - | - | 1 | - | |
| --GTGGCTGTATTCCGACTTTC-------------------------------------- | 20 | 1 | - | - | - | |
| rat | gcGTGGCTGTATTCCGACTTTCCGGGTAAAGATGGCAGAACGCGGTTACagcttctcgct | |||||
| ************************************************************ | ||||||
| ....................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000021384 ENSRNOG00000015824 Psma2 | |||||
| rat | (((.(((((((..(((..((((((........))).)))...))).)))))))...))). | 0.860 -20.50 | ||||
| rat | chromosome:17:58746803:58746862:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000021384|ENSRNOG00000015824 ## ENSRNOG00000015824|protein_coding|Psma2|proteasome (prosome, macropain) subunit, alpha type 2 Gene [Source:MGI Symbol;Acc:MGI:104885] |
sblock10102 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.33/0.36 | 20/24/1.00 | 0.0 0.0 0.0 | 1.0 0.0 0.0 | 2 2 2 | 0 0 0 | 2 1 2 | 0 0 0 | 2 10 0 | 4 -6 16 | 5arm 5arm_loop 3arm | 2 2 2 | nd nd nd | 0.23 0.38 0.19 | 4 7 3 | 6 | 3 | 0 | 4 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------GAUCAUU-------------- | 2 | novel | ||
| seed | -----------CAGAAUG-------------------------------------------------------- | 2 | novel | ||
| seed | ---AGCUUCU---------------------------------------------------------------- | 2 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T5S1 | |||
| ----------------------------------------------------TGATCATTCTCATGAGCATAGA | 22 | 1 | - | 1 | |
| ----------TCAGAATGATTGTGCCTTAAACAA---------------------------------------- | 24 | - | - | 2 | |
| --TAGCTTCTTCAGAATGATTGTG-------------------------------------------------- | 22 | - | - | 1 | |
| --TAGCTTCTTCAGAATGATTG---------------------------------------------------- | 20 | - | 1 | - | |
| rat | tcTAGCTTCTTCAGAATGATTGTGCCTTAAACAAtggaggttaacaacagttTGATCATTCTCATGAGCATAGA | ||||
| ************************************************************************** | |||||
| rat | ((((((((....((((((((((.(((((........)))))...........))))))))))...)))).)))) | 0.610 -17.90 | |||
| rat | chromosome:6:122565018:122565091:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30242 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.