other hairpins
novel_multiarm_DicerNOK_loopOverlap (91 loci)
sblock8957 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.296 | no | no | 0.61/0.67 | 18/24/0.80 | 0.0 0.0 0.0 | 0.0 1.0 0.0 | 2 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 0 28 8 | 6 -18 2 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.46 0.30 0.35 | 3 3 4 | 5 | 3 | -3 | -6 |
| reads | miRBase family seed | ||||
| seed | -----------------------------UCGUGUG--------------------------- | 2 | novel | ||
| seed | -GUUCAGU------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------CCGUUGG-------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S2 | |||
| GGTTCAGTCGGTGTGGCCCCCAGA--------------------------------------- | 24 | - | 2 | - | |
| ----------------------------ATCGTGTGCCGTTGGACC----------------- | 18 | - | - | 1 | |
| ----------------------------ATCGTGTGCCGTTGGACCGC--------------- | 20 | 1 | - | - | |
| -----------------------------------GCCGTTGGACCGCACACTTC-------- | 20 | - | 1 | - | |
| rat | GGTTCAGTCGGTGTGGCCCCCAGAaggcATCGTGTGCCGTTGGACCGCACACTTCtgctttcc | ||||
| *************************************************************** | |||||
| rat | ((..(((...((((((...(((...(((((...)))))..))).))))))....)))....)) | 0.960 -20.60 | |||
| rat | chromosome:4:105696296:105696358:1 | intergenic |
sblock9047 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.180 | no | no | 0.43/0.56 | 18/23/0.80 | 1.0 0.0 0.0 | 2.5 1.0 0.0 | 2 2 1 | 0 0 0 | 2 1 1 | 0 0 0 | 39 37 30 | -21 -4 2 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.87 0.35 0.29 | 20 3 2 | 5 | 2 | 0 | 12 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------CCCCGUC------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------CCAGUGC------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------GUGAAAA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------GAAAAUU------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------AGTGAAAATTGCTGACCCCA--------------------------------------------------------- | 20 | 1 | - | |
| -----------------------------------------------------------TCCCCGTCCAGTGCTTTTCT------------------------------------- | 20 | - | 1 | |
| -----------------------------------------------------------TCCCCGTCCAGTGCTTTT--------------------------------------- | 18 | - | 1 | |
| -----------------------------------------TGAAAATTGCTGACCCCATCCCC---------------------------------------------------- | 23 | - | 1 | |
| -----------------------------------------------------------------TCCAGTGCTTTTCTTAGTGAC------------------------------ | 21 | 1 | - | |
| rat | gttcaccaagtcgcctaacttgtcagaggcaaggcagtgAGTGAAAATTGCTGACCCCATCCCCGTCCAGTGCTTTTCTTAGTGACcctacatgttaggcagagtccctgtgaaca | |||
| ******************************************************************************************************************** | ||||
| rat | ((((((....(((((((((..((((.(((.((((((.((..((....................))..)).)))))).)))..)))).......))))))).))......)))))). | 0.580 -31.15 | ||
| rat | chromosome:4:157293180:157293295:1 | intergenic |
sblock9150 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.42/0.52 | 20/24/1.00 | 0.0 0.0 0.0 | 0.0 0.3 0.3 | 1 3 3 | 0 0 0 | 1 1 1 | 0 0 0 | 9 30 21 | 12 -9 0 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.25 0.46 0.33 | 3 6 3 | 7 | 2 | -7 | -9 |
| reads | miRBase family seed | |||
| seed | -------------------------------CAAAAUG----------------------------------------------------- | 3 | novel | |
| seed | --------------------------------------------------GACAUAG---------------------------------- | 3 | novel | |
| seed | ----------UCUCGUG-------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------------------------TGACATAGGAGAGCCACTCAG--------------------- | 21 | - | 2 | |
| ------------------------------TCAAAATGATGCTCAACCCTGACA------------------------------------- | 24 | - | 2 | |
| -------------------------------------------------TGACATAGGAGAGCCACTCA---------------------- | 20 | - | 1 | |
| ---------TTCTCGTGGACAGGTTACTTCTCA---------------------------------------------------------- | 24 | 1 | - | |
| ------------------------------TCAAAATGATGCTCAACCCTGAC-------------------------------------- | 23 | - | 1 | |
| rat | atccaaacaTTCTCGTGGACAGGTTACTTCTCAAAATGATGCTCAACCCTGACATAGGAGAGCCACTCAGgtccactccagaggaaggatg | |||
| ******************************************************************************************* | ||||
| rat | ((((.....(((((((((((.(((...(((((......(((.(((....))))))..)))))..)))...))))))....))))).)))). | 0.660 -22.20 | ||
| rat | chromosome:4:164283399:164283489:1 | intergenic |
sblock9165 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.250 | no | no | 0.40/0.46 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 40 11 | -1 17 | 5arm_loop 3arm | 1 1 | nd nd | 0.33 0.15 | 2 2 | 3 | 2 | 18 | 14 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------AGCAACU----------------------- | 2 | novel | |
| seed | -----------------------------------------CCCUGAA------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------------------------CAGCAACTAGTTTTTGGTTG----------- | 20 | 1 | 1 | |
| ----------------------------------------TCCCTGAAAGAATCTGCACTTGTC-------------------------------------------------------- | 24 | - | 1 | |
| rat | cgagttagtgtagcaacagccccagagactcagtcaactcTCCCTGAAAGAATCTGCACTTGTCccttcccagcaaggcaagagcctatCAGCAACTAGTTTTTGGTTGgatacctgctt | |||
| ************************************************************************************************************************ | ||||
| rat | .((((..((((.....(((((..(((((((.(((.........((((.((..(((((.(((((.........)))))))).))..)).))))..))))))))))))))).))))..)))) | 0.750 -29.00 | ||
| rat | chromosome:4:164290456:164290575:1 | intergenic |
sblock9356 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.211 | no | no | 0.42/0.53 | 19/25/0.78 | 0.0 0.5 0.0 0.0 | 0.8 3.5 0.0 0.0 | 5 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 14 25 27 7 | 2 -11 -4 14 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 2 2 | nd nd nd nd | 0.29 0.47 0.50 0.41 | 3 5 3 4 | 9 | 2 | 0 | 5 |
| reads | miRBase family seed | |||
| seed | ---------------CCACAGA------------------------------------------------------------------ | 5 | novel | |
| seed | --------------------------GAAGUCC------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------CCUGUAG--------------------------------------- | 1 | miR-10b | |
| seed | ---------------------------AAGUCCU------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------GCUUUCU--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------TCCACAGACTTAGAAGTCCT------------------------------------------------------ | 20 | 1 | 3 | |
| --------------TCCACAGACTTAGAAGTCCTTAGA-------------------------------------------------- | 24 | - | 1 | |
| -----------------------------------------------------------TGCTTTCTGTGGTGTACCTGTG------- | 22 | 1 | - | |
| --------------------------GAAGTCCTTAGAGCCTCCTGTAGTC------------------------------------- | 25 | - | 1 | |
| -----------------------------------------TCCTGTAGTCATTGGTACTG--------------------------- | 20 | - | 1 | |
| -------------------------AGAAGTCCTTAGAGCCTCC-------------------------------------------- | 19 | - | 1 | |
| rat | tcatgaccttgtccTCCACAGACTTAGAAGTCCTTAGAGCCTCCTGTAGTCATTGGTACTGCTTTCTGTGGTGTACCTGTGtcctgag | |||
| **************************************************************************************** | ||||
| rat | (((.(((...((...(((((((...((.(((((...((((.....))..))...)).))).)).)))))))...))....))).))). | 0.820 -18.80 | ||
| rat | chromosome:5:79197611:79197698:-1 | intergenic |
sblock9392 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.144 | no | no | 0.26/0.48 | 19/24/0.75 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 3 12 41 25 | 20 10 -14 5 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.22 0.25 0.58 0.39 | 2 3 8 4 | 4 | 1 | -6 | -8 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------AAUGGAU---------------------------------------------------------- | 1 | novel |
| seed | ----CCUCUCU------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | -------------GUAAGCU--------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------AGGUUGG---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------TGTAAGCTTTGGGATTTTGTTGAC----------------------------------------------------------------------- | 24 | 1 | |
| -----------------------------------------------------------TAGGTTGGAACACAGGAACCTCT------------------------- | 23 | 1 | |
| ---TCCTCTCTTTGTAAGCTTTGGGA--------------------------------------------------------------------------------- | 23 | 1 | |
| -----------------------------------------TAATGGATAACTGCAATAT----------------------------------------------- | 19 | 1 | |
| rat | catTCCTCTCTTTGTAAGCTTTGGGATTTTGTTGACactttTAATGGATAACTGCAATATAGGTTGGAACACAGGAACCTCTataagctatagaataagaggtgtgt | ||
| *********************************************************************************************************** | |||
| rat | (((.(((((..((.(((((((.(((.((((((...(((((.((.((........)).)).))).))....)))))).)))....))))).)).))..))))).))). | 0.620 -23.80 |
| rat | chromosome:5:114522483:114522589:-1 | intergenic |
sblock9476 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.289 | no | no | 0.43/0.50 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 18 24 | 11 -2 | 5arm 3arm_loop | 1 1 | nd nd | 0.33 0.20 | 4 1 | 3 | 2 | -11 | -11 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------CUGACUG------------------------------------ | 2 | novel | |
| seed | -------------------AAACUGC------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ------------------------------------------------------ACTGACTGGAAGGCTTTACC------------------------ | 20 | 2 | - | |
| ------------------CAAACTGCCTAGGAAAATGCT----------------------------------------------------------- | 21 | - | 1 | |
| rat | ggtcagggctcagaatggCAAACTGCCTAGGAAAATGCTtcccgggtgcaagtgACTGACTGGAAGGCTTTACCaggctaggtgcacagtgcctttcc | |||
| ************************************************************************************************** | ||||
| rat | ((..(((((......(((((....((((.((.(((.((((.((((...((......)).)))).))))))).))))))....))).))..))))).)) | 0.500 -30.80 | ||
| rat | chromosome:5:121978601:121978698:-1 | intergenic |
sblock9828 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.59/0.75 | 18/22/0.86 | 0.5 0.3 | 1.5 0.3 | 4 3 | 0 0 | 2 2 | 0 0 | 25 27 | -3 -2 | 5arm_loop 3arm | 1 1 | nd nd | 0.39 0.25 | 3 2 | 7 | 3 | 1 | 0 |
| reads | miRBase family seed | ||||
| seed | ---------------------------CUGGCAG-------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------------------------CGACCCC----------------------------------------- | 2 | novel | ||
| seed | --------------------------UCUGGCA--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------GACCCCA---------------------------------------- | 1 | novel | ||
| seed | ----------------------------UGGCAGU------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S2 | |||
| --------------------------TCTGGCAGTTGGCATGGGTCAC------------------------------------------------------------------ | 22 | 2 | - | - | |
| -----------------------------------------------------------------CCGACCCCAGCCCTCTGCCCTT--------------------------- | 22 | 1 | 1 | - | |
| ---------------------------CTGGCAGTTGGCATGGGTCACT----------------------------------------------------------------- | 22 | 1 | - | - | |
| ------------------------------------------------------------------CGACCCCAGCCCTCTGCCCT---------------------------- | 20 | 1 | - | - | |
| -------------------------CTCTGGCAGTTGGCATGG----------------------------------------------------------------------- | 18 | - | - | 1 | |
| rat | tgggccagtctgtgggacttctcaaCTCTGGCAGTTGGCATGGGTCACTactcctgcaccatataCCGACCCCAGCCCTCTGCCCTTaggtcgtccacagggacctcaaaccca | ||||
| ****************************************************************************************************************** | |||||
| rat | .(((...((((.((((((..((.((....(((((..(((..(((((.....................)))))..)))..))))).)).))..)))).)).))))......))). | 0.990 -38.80 | |||
| rat | chromosome:5:151284236:151284349:1 | intergenic |
sblock764 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.092 | no | no | 0.32/0.45 | 19/21/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 9 27 13 | -2 -9 3 | 5arm_loop 3arm_loop 3arm | 1 2 2 | nd nd nd | 0.30 0.63 0.48 | 3 8 4 | 4 | 1 | 3 | -1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------ACUUCUA-------------------------- | 2 | novel |
| seed | ------------------------------AAAAACA-------------------------------------- | 1 | novel |
| seed | ----------AGAAACA---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------TACTTCTAATAAGCTGTCACA------------- | 21 | 2 | |
| ---------TAGAAACACTTGAAGGGGCA---------------------------------------------- | 20 | 1 | |
| -----------------------------AAAAAACAACCCTACTTCT--------------------------- | 19 | 1 | |
| rat | gttgtcagtTAGAAACACTTGAAGGGGCAAAAAAACAACCCTACTTCTAATAAGCTGTCACAtaactcgactgct | ||
| *************************************************************************** | |||
| ------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | ((.((((((((...(((((((((((((...........)))..))))....))).)))....))))).))).)). | 0.970 -14.30 |
| rat | chromosome:1:129020698:129020772:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
novel_rep_randfoldOK (90 loci)
block24032 [novel_rep_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | LTR/MaLR | 0.58/0.58 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 2 | 5arm | 1 | 32 | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------CUGAGAG------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------CCTGAGAGCTGTGGGAAGGATCTG-------------------------------------------------------------------------------- | 24 | 1 | |
| rat | ------GGAAAGCCAACTGCTG-----------AGCCCTGAGAGCTGTGGGAAGGATCTGTTTTCTGACA-----------------GGCTTCCTCATTCTCT----CCTCAGGGCTT-----TGCACCTCAGGAGGCCA | ||
| human | GAATGCTGAAAGCAAGGTGTTGGCAGGTTGGTTGCTTCTGAGAGCTGTGGGAAGCATGTGTTCCATGCTGCTCCCCTAGCTTCTGGTGGTTTCTGCAATCTCTGGCATCCCCTGGCTTGTAGATGCATC----------- | ||
| mouse | ------------------------------------CCTGAGAGCTGTGGGTAGGATCTGT----GGACA-----------------GATGTATTCACTTGCT----TTCCAG--------------------------- | ||
| ************** ** ** *** * * * ** * ** * | |||
| +++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++>>>>> >>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004963 ENSRNOG00000003785 Usp43 | ||
| rat | ((....((...(((.( (((((((((((..((((((((..((((((....)))) ))))))).)))...)) ).))))))))) .))).....))...)). | 0.680 -41.50 | |
| human | ..((((...((((.(((((((((.((((((...((..((..((((((.((((((((((.....))))))..)))).))))))..))..)).....))))))))))))...))).))))......)))). | 0.985 -45.90 | |
| mouse | ...((((((.(((((((..(((((. ...)) ))).)))))))..))) )))... | 1.000 -18.70 |
| rat | chromosome:10:54614436:54614532:-1 | Same_strand|Intronic_coding|ENSRNOT00000004963|ENSRNOG00000003785 ## ENSRNOG00000003785|protein_coding|Usp43|ubiquitin specific peptidase 43 Gene [Source:MGI (curated);Acc:Usp43-004] |
| human | chromosome:5:10791107:10791235:-1 | Same_strand|Intronic_coding|ENST00000230895|ENSG00000112977|protein_coding|Death-associated protein 1 (DAP-1) [Source:UniProtKB/Swiss-Prot;Acc:P51397] ## {Repeats: MLT1C -1 class=LTR/MaLR} |
| mouse | chromosome:9:97556826:97556962:1 | Opposite_strand|Intronic_coding|ENSMUST00000035027|ENSMUSG00000032452|protein_coding|calsyntenin 2 Gene [Source:MGI Symbol;Acc:MGI:1929897] |
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