other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH (81 loci)
sblock9121 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.47/0.61 | 18/26/0.25 | 0.0 0.0 0.0 1.0 | 0.0 0.0 1.5 1.5 | 1 1 2 4 | 0 0 0 0 | 1 1 2 3 | 0 0 0 0 | 19 47 28 18 | 24 -12 -4 8 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 2 | nd nd nd nd | 0.33 0.46 0.40 0.29 | 3 5 4 4 | 8 | 4 | 0 | 15 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------GUCCCAA--------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------------CCCAAGU------------------------------- | 2 | novel | |||
| seed | ---------------------------------------------------------------AGAGACC--------------------------------------------- | 2 | novel | |||
| seed | --------------------CUUGCCG---------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------GCUCAGG------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------TGTCCCAAGTTCATTCAGG---------------------- | 19 | - | - | 1 | 1 | |
| --------------------------------------------------------------TAGAGACCCTCCTGTCCCAAGT------------------------------- | 22 | 1 | - | - | - | |
| --------------------------------------------------------------TAGAGACCCTCCTGTCCCAAGTTCA---------------------------- | 25 | - | 1 | - | - | |
| -------------------TCTTGCCGTGGCTGTGGT------------------------------------------------------------------------------ | 18 | - | - | 1 | - | |
| ----------------------------------------------------------------------------TCCCAAGTTCATTCAGGCAAG------------------ | 21 | 1 | - | - | - | |
| ----------------------------------------------------------------------------TCCCAAGTTCATTCAGGCA-------------------- | 19 | 1 | - | - | - | |
| -----------------------------------------------TGCTCAGGCTGGTTTTAGAGACCCTC------------------------------------------ | 26 | - | - | 1 | - | |
| rat | cattgataacagtccacaaTCTTGCCGTGGCTGTGGTggggtcctctTGCTCAGGCTGGTTTTAGAGACCCTCCTGTCCCAAGTTCATTCAGGCAAGttgtgagacttccacagt | |||||
| ******************************************************************************************************************* | ||||||
| rat | .((((.....(((((((((.((((((.((..((...(((((..........((((..((((.....))))..)))))))))....))..))))))))))))).))))....)))) | 0.960 -37.70 | ||||
| rat | chromosome:4:164268846:164268960:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap (79 loci)
sblock6886 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.395 | no | no | 0.32/0.68 | 18/24/0.59 | 0.0 0.0 0.8 0.0 0.0 0.0 | 1.5 0.0 1.0 0.0 0.0 0.0 | 2 1 4 1 6 2 | 0 0 0 0 0 0 | 1 1 2 1 8 1 | 0 0 0 0 0 0 | 2 19 26 37 47 1 | 26 13 0 -9 -20 26 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.41 0.39 0.52 0.77 0.57 0.26 | 3 4 9 9 7 2 | 29 | 8 | -14 | 0 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------------CAAUCCU--------------------------------------------- | 15 | novel | |||||||
| seed | ------------------------------GUCAUGC--------------------------------------------------------------- | 3 | novel | |||||||
| seed | ---------------------------------------------------------------------------------CCUCAUG------------ | 2 | novel | |||||||
| seed | ---CAGUCAA------------------------------------------------------------------------------------------ | 2 | novel | |||||||
| seed | -----------------------------------------------UCAAUCC---------------------------------------------- | 2 | novel | |||||||
| seed | -----------------------------------------------------CUGUCAA---------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------CCUGUCA----------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------GCCUCAC------------------------------------------------------- | 1 | novel | |||||||
| seed | --------------------GUCAUCU------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------CAUGUCA------------------------------------------------------------------ | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------TCAATCCTGTCAACACCAGCACC------------------------------ | 23 | - | - | 1 | - | 1 | 1 | 6 | - | |
| -----------------------------------------------TCAATCCTGTCAACACCAG---------------------------------- | 19 | 1 | 1 | - | - | - | - | 1 | - | |
| -----------------------------TGTCATGCTGCCTCACCTT---------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------------------------------------------TCCTCATGCGTGACCGGGG- | 19 | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------TCCTGTCAACACCAGCACC------------------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| --TCAGTCAAAAGTAAAAAGGTCA---------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TCAATCCTGTCAACACCAGCA-------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| --TCAGTCAAAAGTAAAAAGG------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------CCTGTCAACACCAGCACCG----------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------------------------TGTCATGCTGCCTCACCTTCA-------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TCAATCCTGTCAACACCAGCACCG----------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------TTCAATCCTGTCAACACCAGCACC------------------------------ | 24 | - | - | - | 1 | - | - | - | - | |
| --------------------------TCATGTCATGCTGCCTCACC------------------------------------------------------ | 20 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------TTCAATCCTGTCAACACCA----------------------------------- | 19 | 1 | - | - | - | - | - | - | - | |
| -------------------------------------TGCCTCACCTTCAATCCTGTCA----------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -------------------GGTCATCTCATGTCATGC--------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------TCAATCCTGTCAACACCAGCAC------------------------------- | 22 | - | - | - | - | - | - | - | 1 | |
| rat | cctcagtcaaaagtaaaaaggtcatctcaTGTCATGCTGCCTCACCTTCAATCCTGTCAACACCAGCACCggcctcggttTCCTCATGCGTGACCGGGGc | |||||||||
| **************************************************************************************************** | ||||||||||
| rat | ((((.((((...(((...(((..(((....(((.(((((.........((....)).......)))))..)))...)))..)))..))).)))).)))). | 0.960 -21.59 | ||||||||
| rat | chromosome:20:13212303:13212402:-1 | intergenic ## {Repeats: (CCCCG)n 36 40 -1 class=Simple_repeat,dust 13212304 13212308 0 class=dust,trf 35 39 0 class=trf,(CCCCG)n 2 40 -1 class=Simple_repeat,trf 36 40 0 class=trf} |
block1469250 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.32/0.65 | 18/23/0.67 | 0.0 0.0 0.0 0.0 1.5 | 0.8 0.0 0.0 0.0 0.0 | 4 7 1 1 2 | 0 0 0 0 0 | 3 1 1 1 1 | 0 0 0 0 0 | 27 33 25 20 10 | -4 -13 -6 2 8 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.61 0.73 0.59 0.53 0.25 | 6 6 7 7 1 | 15 | 4 | 4 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------GCAAAGC------------------------------------------------ | 7 | novel | |||
| seed | ----------------------------CCUCCUG------------------------------------------------------ | 4 | novel | |||
| seed | ---------------------------------------------------GAGAAUU------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------AGAAGUC---------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------UGGAGAA------------------------- | 1 | novel | |||
| seed | -------------------------------------------CUUAUUG--------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ---------------------------------TGCAAAGCATCTTATTGTGAGA---------------------------------- | 22 | - | - | 7 | - | |
| ---------------------------TCCTCCTGCAAAGCATCTT------------------------------------------- | 19 | 1 | 1 | 1 | - | |
| --------------------------------------------------------TTGGAGAAGTCCCACTGGGGCAG---------- | 23 | - | - | 1 | - | |
| ---------------------------TCCTCCTGCAAAGCATCT-------------------------------------------- | 18 | 1 | - | - | - | |
| -----------------------------------------------------------GAGAAGTCCCACTGGGGCAG---------- | 20 | - | - | 1 | - | |
| --------------------------------------------------TGAGAATTGGAGAAGTCCC-------------------- | 19 | - | - | 1 | - | |
| ------------------------------------------TCTTATTGTGAGAATTGGAGAA------------------------- | 22 | - | - | - | 1 | |
| rat | gctcttggcccttccctggctcagggttcctccTGCAAAGCATCTTATTGTGAGAattggagaagtcccactggggcagagcaggggcg | |||||
| ***************************************************************************************** | ||||||
| rat | ((((((.((.((.((((((....(((((.((((......(((......))).......)))).)).))).)))))).)).)))))))). | 0.500 -31.72 | ||||
| rat | chromosome:3:76934206:76934294:1 | intergenic ## {Repeats: dust 76934337 76934344 0 class=dust} |
sblock10074 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.277 | no | no | 0.36/0.55 | 19/25/0.50 | 0.0 0.0 0.0 0.0 0.5 | 0.0 0.0 0.0 0.0 0.0 | 3 3 1 1 2 | 0 0 0 0 0 | 1 1 1 1 2 | 0 0 0 0 0 | 7 37 43 29 0 | 24 -4 -4 9 38 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 2 2 | nd nd nd nd nd | 0.52 0.30 0.42 0.35 0.26 | 8 4 3 5 3 | 10 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | --------GUGGUUA------------------------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | --------------------------------------CAAAGCU------------------------------------------------------------------------- | 3 | novel | ||
| seed | ----------------------------------------------------------------------------------------------------AACGGUA----------- | 1 | novel | ||
| seed | ---------------------------------------------------------ACAUAUG------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------------GCUGGCU----------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------------------UAACGGU------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| -------TGTGGTTAAATTTTGTCTCAACTCC-------------------------------------------------------------------------------------- | 25 | - | - | 3 | |
| -------------------------------------CCAAAGCTTACGAGTAGTGTACA---------------------------------------------------------- | 23 | - | - | 3 | |
| --------------------------------------------------------TACATATGTGACTTGCTGG------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------------------------------------------ATAACGGTAGCTTCAGACAG | 20 | - | - | 1 | |
| ---------------------------------------------------------------------------------------------------TAACGGTAGCTTCAGACAG | 19 | 1 | - | - | |
| ---------------------------------------------------------------------TGCTGGCTTTGTTCTGGGGA----------------------------- | 20 | - | 1 | - | |
| rat | tgtcccaTGTGGTTAAATTTTGTCTCAACTCCtgtctCCAAAGCTTACGAGTAGTGTACATATGTGACTTGCTGGCTTTGTTCTGGGGAcctaccaagATAACGGTAGCTTCAGACAG | ||||
| ********************************************************************************************************************** | |||||
| rat | ((((...((.(((((....((((((........((((((((((((..(((((.(((....)))...)))))..))))).....)))))))......))))))...))))).)))))). | 0.460 -29.34 | |||
| rat | chromosome:6:122555136:122555253:-1 | intergenic |
sblock10076 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.565 | no | no | 0.32/0.50 | 18/24/0.27 | 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.5 0.0 0.0 0.0 0.0 | 1 2 4 1 4 1 | 0 0 0 0 0 0 | 1 1 2 1 2 1 | 0 0 0 0 0 0 | 4 40 36 30 22 0 | 32 -1 -2 2 12 32 | 5arm 5arm_loop 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.59 0.44 0.32 0.24 0.47 0.50 | 11 4 2 2 7 4 | 15 | 4 | 0 | 2 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------CCUUAGA----------------------------------------------- | 5 | novel | |||
| seed | ---------------------------------------------------------------------------CAGAUAA--------------------------------- | 4 | novel | |||
| seed | -----------------------------------------AGAGAUU------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------AGGCUCC---------------------------------------------------- | 1 | novel | |||
| seed | -----CACAUGG------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------------AUAAAGU------------- | 1 | miR-142 | |||
| seed | -----------------------------------------------------------------AGAUGGU------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------TCCTTAGATGGTCTTCAGA------------------------------------ | 19 | - | 1 | 4 | - | |
| --------------------------------------------------------------------------TCAGATAACTGCCCTCCTT---------------------- | 19 | - | - | 3 | 1 | |
| -------------------------------------------------------GAGGCTCCTTAGATGGTCTTCAGA------------------------------------ | 24 | - | - | 1 | - | |
| ----------------------------------------TAGAGATTGTCACCAGAGG-------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------------------------------TAGATGGTCTTCAGATAACTG------------------------------ | 21 | - | - | 1 | - | |
| ----------------------------------------------------------------------------------------------AATAAAGTCAGTGTTTGCCTG | 21 | 1 | - | - | - | |
| ----TCACATGGATTCAGTCAAAAAA----------------------------------------------------------------------------------------- | 22 | - | - | 1 | - | |
| ----------------------------------------TAGAGATTGTCACCAGAG--------------------------------------------------------- | 18 | - | - | 1 | - | |
| rat | ggaatcacatggattcagtcaaaaaaggcattgttttctttagagattgtcaccagaggcTCCTTAGATGGTCTTCAGATAACTGCCCTCCTTaaataaagtcagtgtttgcctg | |||||
| ******************************************************************************************************************* | ||||||
| rat | ((....((((.((((...........((((..(((.(((...(((((..((....(((....))).))..))))).))).)))))))............)))).))))...)).. | 0.600 -22.90 | ||||
| rat | chromosome:6:122555616:122555730:-1 | intergenic |
sblock10079 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.29/0.48 | 18/23/0.50 | 1.0 0.0 0.0 0.2 0.0 0.0 | 2.4 0.0 0.0 0.0 0.0 0.0 | 8 2 2 4 1 1 | 0 0 0 0 0 0 | 2 1 1 2 1 1 | 0 0 0 0 0 0 | 12 32 30 21 17 3 | 2 -14 -12 -4 2 16 | 5arm 5arm_loop 3arm_loop 3arm_loop 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.26 0.79 0.55 0.25 0.16 0.47 | 4 15 11 2 2 6 | 18 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | -------------CCCUGAA---------------------------------------------------------------------- | 6 | novel | |
| seed | -------------------------------------------------AAAGCUC---------------------------------- | 3 | novel | |
| seed | ---------------------------------GGGCAAU-------------------------------------------------- | 2 | novel | |
| seed | -----------------GAAUCUC------------------------------------------------------------------ | 2 | novel | |
| seed | -----------------------------------------AGCAAAA------------------------------------------ | 2 | novel | |
| seed | --------------------------------------------------AAGCUCA--------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------CAUCAUU---------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------AGGAAAG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------TCCCTGAATCTCTGAAAT------------------------------------------------------------ | 18 | 1 | 2 | |
| ------------------------------------------------TAAAGCTCATCATTCATTTCT--------------------- | 21 | 1 | 2 | |
| --------------------------------TGGGCAATCAGCAAAATAA--------------------------------------- | 19 | - | 2 | |
| ----------------------------------------CAGCAAAATAAAGCTCATCA------------------------------ | 20 | - | 2 | |
| ------------TCCCTGAATCTCTGAAATGGT--------------------------------------------------------- | 21 | - | 1 | |
| --------------------------------------------------------------------TAGGAAAGACTTGGGTTTG--- | 19 | - | 1 | |
| ------------------------------------------------------TCATCATTCATTTCTAGGA----------------- | 19 | - | 1 | |
| -------------------------------------------------AAAGCTCATCATTCATTTCT--------------------- | 20 | 1 | - | |
| ------------TCCCTGAATCTCTGAAATGG---------------------------------------------------------- | 20 | - | 1 | |
| ----------------TGAATCTCTGAAATGGTG-------------------------------------------------------- | 18 | - | 1 | |
| ------------TCCCTGAATCTCTGAAATGGTGG------------------------------------------------------- | 23 | 1 | - | |
| ----------------TGAATCTCTGAAATGGTGG------------------------------------------------------- | 19 | - | 1 | |
| rat | ttccagcactgtTCCCTGAATCTCTGAAATGGTGGGCAATCAGCAAAATAAAGCTCATCATTCATTTCTAGGAAAGACTTGGGTTTGgaa | |||
| ****************************************************************************************** | ||||
| rat | .(((((..((.((((..(((....((.((((((((((...............)))))))))))).)))..))))......))..))))). | 0.960 -22.16 | ||
| rat | chromosome:6:122556261:122556350:-1 | intergenic |
sblock10123 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.460 | no | no | 0.29/0.52 | 18/25/0.09 | 0.0 0.0 0.0 0.5 0.0 | 0.0 0.0 0.2 0.5 0.0 | 1 1 4 4 1 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 8 26 16 11 0 | 8 -14 -4 0 6 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.48 0.44 0.37 0.21 0.25 | 9 8 3 2 2 | 11 | 2 | 0 | -15 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------AUUUUCA--------------------------- | 4 | novel | |
| seed | -----------------------------------------------CACAUCC---------------------- | 2 | novel | |
| seed | ----------------------------------------------UCACAUC----------------------- | 2 | novel | |
| seed | ---------GCUUUUU------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------CUAAGUU------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------CCAGGGA----------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----------------------------------------TATTTTCACATCCAGGGA----------------- | 18 | - | 3 | |
| ----------------------------------------------TCACATCCAGGGATAAAGG----------- | 19 | - | 2 | |
| ---------------------------------------------TTCACATCCAGGGATAAAG------------ | 19 | - | 2 | |
| --------TGCTTTTTGATCATTTTCTCT----------------------------------------------- | 21 | 1 | - | |
| --------------------------TCTAAGTTGAACCCTTATTTTCACA------------------------- | 25 | - | 1 | |
| -----------------------------------------TATTTTCACATCCAGGGAT---------------- | 19 | - | 1 | |
| ---------------------------------------------------TCCAGGGATAAAGGCATAGCAGTCC | 25 | - | 1 | |
| rat | aggaagttTGCTTTTTGATCATTTTCTCTAAGTTGAACCCTTATTTTCACATCCAGGGATAAAGGCATAGCAGTCC | |||
| **************************************************************************** | ||||
| rat | .(((.((((((((((.........(((((..((((((........)))).))..))))).))))))).)))..))) | 0.540 -12.50 | ||
| rat | chromosome:6:122571944:122572019:-1 | intergenic |
sblock10616 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.182 | no | no | 0.32/0.56 | 18/25/0.07 | 0.0 0.0 2.5 | 0.0 0.0 0.0 | 1 10 2 | 0 0 0 | 1 2 1 | 0 0 0 | 0 24 1 | 20 -4 13 | 5arm 3arm_loop 3arm | 9 9 9 | nd nd nd | 0.39 0.37 0.20 | 4 3 2 | 14 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------GACGUCU----------------------------------- | 11 | novel | |
| seed | -GCCAUUU---------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------AUAAUCC------------------ | 1 | novel | |
| seed | ----------------------------------------------------------------CCACUGC------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -----------------------------------------TGACGTCTATGATTTTACA------------------------ | 19 | 1 | 10 | |
| TGCCATTTCAGTGAGGGG------------------------------------------------------------------ | 18 | - | 1 | |
| ----------------------------------------------------------CATAATCCACTGCATCTTTTTGGGT- | 25 | - | 1 | |
| ---------------------------------------------------------------TCCACTGCATCTTTTTGGGT- | 20 | - | 1 | |
| rat | tgccatttcagtgaggggcagtgtatgcggtgatgggctggTGACGTCTATGATTTTACAtaatccactgcatctttttgggta | |||
| ************************************************************************************ | ||||
| rat | ((((....(((.(((..((((((((((.(((.((((((.......)))))).)))...))))...))))))..))).))))))) | 0.990 -23.00 | ||
| rat | chromosome:7:17358200:17358283:-1 | intergenic |
sblock10858 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.758 | no | no | 0.43/0.80 | 18/21/0.29 | 0.0 0.0 0.9 0.0 0.0 | 0.0 0.0 1.1 0.0 0.0 | 1 1 9 1 2 | 0 0 0 0 0 | 1 1 4 1 1 | 0 0 0 0 0 | 5 11 33 49 33 | 29 24 -2 -13 1 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.48 0.40 0.30 0.47 0.47 | 5 4 2 4 3 | 14 | 5 | 3 | -3 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------CGCGGCG------------------------------------------------------------------- | 5 | novel | ||||
| seed | -------------------------------------ACGCGGC-------------------------------------------------------------------- | 3 | novel | ||||
| seed | -------------------------------------------------------------CGGGGCC-------------------------------------------- | 2 | novel | ||||
| seed | ------------GAACCGG--------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------CAUUCAG--------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------CGAACGC----------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------CAGUGAU------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ------------------------------------AACGCGGCGGTCGGCAGT---------------------------------------------------------- | 18 | - | - | 3 | - | - | |
| -------------------------------------ACGCGGCGGTCGGCAGTG--------------------------------------------------------- | 18 | - | 1 | - | - | 1 | |
| ------------------------------------------------------------GCGGGGCCTGCGAAGCACC--------------------------------- | 19 | - | - | - | 2 | - | |
| -------------------------------------ACGCGGCGGTCGGCAGTGA-------------------------------------------------------- | 19 | - | 2 | - | - | - | |
| -------------------------------------ACGCGGCGGTCGGCAGTGAT------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| -----------AGAACCGGGTAACATTCGGC--------------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | |
| -------------------------------------------------GCAGTGATAGCGCGGGGCC-------------------------------------------- | 19 | - | - | - | 1 | - | |
| -----ACATTCAGAACCGGGTAACAT-------------------------------------------------------------------------------------- | 21 | - | - | 1 | - | - | |
| ---------------------------------CCGAACGCGGCGGTCGGCAG----------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | gtgtaACATTCAGAACCGGGTAACATTCGGCgaCCGAACGCGGCGGTCGGCAGTGATAGCGCGGGGCCTGCGAAGCACCgctcggggccggcattgcccgcggggaggacgc | ||||||
| **************************************************************************************************************** | |||||||
| rat | ((((....(((.....(((((((...(((((..((((.((..((.((.(((.(((....)))...))).))...))..)).)))).)))))..)))))))....))).)))) | 0.910 -43.30 | |||||
| rat | chromosome:7:89671382:89671493:-1 | intergenic ## {SimpF: 1 Eponine,oe = 0.94 -1 CpG} |
sblock10902 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.232 | no | no | 0.37/0.50 | 18/23/0.28 | 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 1.0 0.0 0.0 | 1 7 3 6 5 1 | 0 0 0 0 0 0 | 1 2 1 2 3 1 | 0 0 0 0 0 0 | 22 32 56 37 29 16 | 18 7 -17 -7 4 13 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.33 0.37 0.58 0.41 0.26 0.22 | 3 3 10 6 2 3 | 29 | 4 | 0 | -12 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------GCAAAAU--------------------------------------------------- | 10 | novel | |||
| seed | ---------------------------------AGACAUG-------------------------------------------------------------------------------- | 9 | novel | |||
| seed | -------------------------------------------------------------------------AGGAACC---------------------------------------- | 5 | novel | |||
| seed | ---------------------------------------------------------ACAGUGC-------------------------------------------------------- | 3 | novel | |||
| seed | ----------------------------------------------------------------------------------CGUGCUU------------------------------- | 1 | novel | |||
| seed | -----------------------AGGUGAA------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T4S1 | T5S1 | |||
| --------------------------------TAGACATGTCGGGTGAACT--------------------------------------------------------------------- | 19 | 1 | - | - | 7 | |
| ------------------------------------------------------------------------TAGGAACCCTCGTGCTTTT----------------------------- | 19 | 1 | - | 1 | 3 | |
| -------------------------------------------------------------TGCAAAATGACTAGGAACCCTC------------------------------------- | 22 | - | 1 | - | 4 | |
| --------------------------------------------------------TACAGTGCAAAATGACTAG--------------------------------------------- | 19 | - | - | - | 3 | |
| -------------------------------------------------------------TGCAAAATGACTAGGAACC---------------------------------------- | 19 | - | - | - | 2 | |
| -------------------------------------------------------------TGCAAAATGACTAGGAACCCTCG------------------------------------ | 23 | - | - | - | 1 | |
| -------------------------------------------------------------TGCAAAATGACTAGGAACCC--------------------------------------- | 20 | - | - | - | 1 | |
| --------------------------------TAGACATGTCGGGTGAAC---------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| -------------------------------------------------------------TGCAAAATGACTAGGAAC----------------------------------------- | 18 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------TCGTGCTTTTTTATCTCCAGACT---------------- | 23 | 1 | - | - | - | |
| ----------------------TAGGTGAATCTAGACATG-------------------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | agtgactcagggttctggacaataggtgaatcTAGACATGTCGGGTGAACTaaggtTACAGTGCAAAATGACTAGGAACCCTCGTGCTTTTttatctccagactcaaaagccttgtttat | |||||
| ************************************************************************************************************************ | ||||||
| rat | .((((..((((((((((((.....((((((...((.((((..((((...((..(((((..........)))))))..)))).))))))..)))))))))))).......)))))).)))) | 0.980 -29.41 | ||||
| rat | chromosome:7:96050995:96051114:-1 | intergenic |
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