miR-Intess: classification

other hairpins

novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap (79 loci)

novel_lenNOK_shortStem_loopOverlap_bulgeHIGH (78 loci)

block39245 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.483	no	no	0.37/0.39	18/19/0.00	0.5	1.0	4	0	2	0	4	-1	5arm_loop	1	nd	0.22	4	4	2	na	na

		reads	miRBase family seed
seed	-----UGACCUA--------------------------------------	2	miR-192/215
seed	------GACCUAU-------------------------------------	2	novel
		len	cloning frequencies
			T2S2	T5S2
	-----TGACCTATGAATTAACGAG--------------------------	19	1	1
	----GTGACCTATGAATTAACG----------------------------	18	2	-
rat	gcagGTGACCTATGAATTAACGAGacaccattgttctgattctgtcaagc
	**************************************************
rat	((...((((....((((((((((.......))))..)))))).)))).))	0.990 -8.20

rat

chromosome:10:85280250:85280299:-1

intergenic

block85039 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.034	no	no	0.39/0.40	18/20/0.50	0.0	1.0	2	0	1	0	2	-1	5arm_loop	1	nd	0.22	4	2	1	na	na

		reads	miRBase family seed
seed	---AAGAUCA-------------------------------------------	2	novel
		len	cloning frequencies
			T1S1
	--AAAGATCAAACCAGAAGG---------------------------------	18	1
	--AAAGATCAAACCAGAAGGCA-------------------------------	20	1
rat	aaAAAGATCAAACCAGAAGGCAaccagctttcttttacaggttgttggctttt
	*****************************************************
	---------------------------------------------------------------	ENSRNOT00000009348 ENSRNOG00000007019 Accn1
	---------------------------------------------------------------	ENSRNOT00000049846 ENSRNOG00000007019 Accn1
rat	.(((((....(((((((((((.....)))))))......)))).....)))))	1.000 -12.10

rat

chromosome:10:69228632:69228684:1

Opposite_strand|Intronic_coding|ENSRNOT00000049846|ENSRNOG00000007019 ## ENSRNOG00000007019|protein_coding|Accn1|Amiloride-sensitive cation channel 1, neuronal (Amiloride-sensitive brain sodium channel) (Amiloride-sensitive brain sodium channel 2) (Amiloride-sensitive cation channel neuronal 1) (Acid-sensing ion channel 2) (Brain sodium channel 1) (BNaC1) (BNC1) (Ma [Source:UniProtKB/Swiss-Prot;Acc:Q62962] ## {Repeats: dust 69228628 69228631 0 class=dust}

block89451 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.208	no	no	0.35/0.39	18/20/0.14	0.0	0.6	7	0	2	0	0	-5	5arm_loop_3arm	1	nd	0.22	4	7	2	na	na

		reads	miRBase family seed
seed	-CCUUAGA------------------------------------	7	novel
		len	cloning frequencies
			T4S1	T4S2
	TCCTTAGATTTTCCCATCA-------------------------	19	-	3
	TCCTTAGATTTTCCCATC--------------------------	18	1	2
	TCCTTAGATTTTCCCATCAA------------------------	20	1	-
rat	TCCTTAGATTTTCCCATCAAggcaagagaatgtgttcctaggga
	********************************************
	------------------------------------------------------	ENSRNOT00000003281 ENSRNOG00000002415 AL772375.5
rat	(((((((((((((((.....))...))))))......)))))))	0.880 -8.70

rat

chromosome:10:77884155:77884198:1

block100581 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.059	no	no	0.28/0.28	18/18/0.00	0.0	0.0	2	0	2	0	0	-3	5arm_loop	1	nd	0.22	4	2	2	na	na

		reads	miRBase family seed
seed	-UCAAGUA----------------------------------	2	miR-26a/26b
		len	cloning frequencies
			T2S2	T3S2
	TTCAAGTAAAATTGGTAC------------------------	18	1	1
rat	TTCAAGTAAAATTGGTACcccagttttggaaatgatcttgag
	******************************************
	----------------------------------------------------	ENSRNOT00000005076 ENSRNOG00000003800 Rgs9
rat	.((((((((((((((....)))))))))........))))).	1.000 -9.30

rat

chromosome:10:98606205:98606246:1

block110942 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.240	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	0	-4	5arm_loop	1	nd	0.26	5	1	1	na	na

		reads	miRBase family seed
seed	-CAGUUUU--------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	TCAGTTTTATTTTCCAATT---------------------------	19	1
rat	TCAGTTTTATTTTCCAATTaccaccagggagcctgcatgggactga
	**********************************************
rat	(((((((((((((((...........))))).....))))))))))	0.980 -9.30

rat

chromosome:11:12441358:12441403:-1

intergenic

block115450 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.100	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	4	-2	3arm_loop	1	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------GGGGGUU--------------	1	novel
		len	cloning frequencies
			T1S1
	------------------------------------TGGGGGTTTGTTGGAAAT----	18	1
rat	tctgtggaagaggtaggctccagtaggaggaggagaTGGGGGTTTGTTGGAAATaggg
	**********************************************************
rat	(((((......((((((((((.................))))))))))....))))).	0.950 -8.63

rat

chromosome:11:25859978:25860035:-1

intergenic

block152615 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	4	-1	3arm	1	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------CACGGUU---------------	1	novel
		len	cloning frequencies
			T3S2
	---------------------------ACACGGTTCATGACTGTTA----	19	1
rat	gtgataacgtaaaggctgtgaagtaatACACGGTTCATGACTGTTAtggc
	**************************************************
rat	((.(((((((...(((((((........)))))))....)).))))).))	1.000 -12.50

rat

chromosome:11:30900412:30900461:1

intergenic

block178317 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.022	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	4	-1	3arm	1	nd	0.21	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------CCCUCAG---------------	1	miR-760
		len	cloning frequencies
			T5S2
	-----------------------------TCCCTCAGACCCTTTTTTT----	19	1
rat	ggatgagacacggtctccagagggcagttTCCCTCAGACCCTTTTTTTattt
	****************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000001449 ENSRNOG00000001092 Kl
rat	.(((((((...(((((...(((((......))))))))))....))))))).	0.970 -15.70

rat

chromosome:12:3737593:3737644:-1

block182899 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.813	no	no	0.77/0.77	26/26/0.00	0.0	0.0	1	0	1	0	4	-2	3arm_loop	1	nd	0.27	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CCCGUGG----------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------------------------------------CCCCGTGGCCCGATGCTTCCCTGGGG----	26	1
rat	ggtggtctagtggaaaaagcgggaacccctggacactcccgaatgcCCCCGTGGCCCGATGCTTCCCTGGGGcgct
	****************************************************************************
rat	((((.(((((.((((....((((...((.(((................))).))))))....))))))))).))))	0.540 -24.59

rat

chromosome:12:11554301:11554376:-1

intergenic

block199345 [novel_lenNOK_shortStem_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.149	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	4	-1	3arm	1	nd	0.22	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------GGGACAG--------------	1	novel
		len	cloning frequencies
			T2S2
	-----------------------------AGGGACAGACACTAATGG----	18	1
rat	ggatcagagagtgctcttcagtctcagagAGGGACAGACACTAATGGagcc
	***************************************************
rat	((.((....((((.(((...(((((.....))))))))))))....)).))	1.000 -13.50