other hairpins
novel_lenNOK_multiarm_DicerNOK_bulgeHIGH (74 loci)
novel_lenNOK_multiarm_DicerNOK_shortStem (73 loci)
sblock10015 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.061 | no | no | 0.11/0.21 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 4 13 | 5arm 3arm | 4 4 | nd nd | 0.21 0.56 | 2 5 | 2 | 2 | 5 | 0 |
| reads | miRBase family seed | |||
| seed | -GUUAAAU-------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------AAAAAAU----------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| TGTTAAATTTGTAAGTTTC--------------------------------------- | 19 | - | 1 | |
| ---------------------------------------TAAAAAATTTTTCAAAAAG | 19 | 1 | - | |
| rat | TGTTAAATTTGTAAGTTTCaggtgacatgtgaaacttttTAAAAAATTTTTCAAAAAG | |||
| ********************************************************** | ||||
| rat | ((..((((((..((((((((.((...)).))))))))......))))))..))..... | 0.990 -10.00 | ||
| rat | chromosome:6:85915933:85915990:-1 | intergenic ## {Repeats: dust 85915933 85915952 0 class=dust} |
sblock10291 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.630 | no | no | 0.16/0.22 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 23 33 | 5arm 3arm | 2 2 | nd nd | 0.16 0.53 | 1 8 | 2 | 2 | 8 | 1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------AGGAAAA---------- | 1 | novel | |
| seed | -AAUUUUG----------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| -------------------------------------------------------------------------------TAGGAAAATTCATTTATC | 18 | - | 1 | |
| TAATTTTGCTGTTTTATAA------------------------------------------------------------------------------ | 19 | 1 | - | |
| rat | TAATTTTGCTGTTTTATAAagcagatttatatcttttcagaggctcctatggaaataatctactgcagtgtttacaagtTAGGAAAATTCATTTATC | |||
| ************************************************************************************************* | ||||
| rat | .((((((.(((.(((.((((((((.........((((((.((....)).)))))).......))))....)))).))).))).))))))........ | 0.700 -12.99 | ||
| rat | chromosome:6:62455628:62455724:1 | intergenic |
sblock1032 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.21/0.42 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 0 | 10 39 | 5arm 3arm | 2 3 | nd nd | 0.11 0.78 | 1 14 | 2 | 2 | 15 | 9 |
| reads | miRBase family seed | |||
| seed | ---CAAGACA----------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------UGGAAUA----------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S2 | |||
| --CCAAGACACAATTCTACTG------------------------------------------------------------------------ | 19 | - | 1 | |
| --------------------------------------------------------------------------TTGGAATAAAAATATTTGG | 19 | 1 | - | |
| rat | atCCAAGACACAATTCTACTGtgcttcatggttgcccaagaacaagaaccaacccagtaggtacttgatgctgcTTGGAATAAAAATATTTGG | |||
| ********************************************************************************************* | ||||
| rat | .((((((.(((((.(((((((((.(((.(((....))).)))))..........)))))))...))).))...)))))).............. | 0.650 -19.30 | ||
| rat | chromosome:1:222626616:222626708:-1 | intergenic |
sblock10345 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.222 | no | no | 0.60/0.72 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 3 | 18 7 | 5arm 3arm | 1 1 | nd nd | 0.33 0.10 | 4 1 | 2 | 2 | -5 | 1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------CUGAGGU--------------- | 1 | novel | |
| seed | -----GGAAACG-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ----GGGAAACGGGGTGAGGCC---------------------------------------------------- | 18 | - | 1 | |
| ---------------------------------------------------GCTGAGGTATCACCTCTCCG--- | 20 | 1 | - | |
| rat | gcgtGGGAAACGGGGTGAGGCCggtttctcggcccgggcgggtgcggccagGCTGAGGTATCACCTCTCCGagc | |||
| ************************************************************************** | ||||
| rat | ((.((((....(((((((.(((......((((((.((.((....)).)).))))))))).))))))))))).)) | 0.460 -33.00 | ||
| rat | chromosome:6:107725959:107726032:1 | intergenic |
sblock10672 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.32/0.32 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 1 | 14 0 | 5arm 3arm | 2 5 | nd nd | 0.58 0.21 | 10 2 | 3 | 1 | 0 | -12 |
| reads | miRBase family seed | ||
| seed | -AUCAUUU---------------------------------------------------- | 2 | novel |
| seed | -----------------------------------------CCUGCAA------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| CATCATTTTACGGTAGTTT----------------------------------------- | 19 | 2 | |
| ----------------------------------------TCCTGCAACTATAAAATTC- | 19 | 1 | |
| rat | CATCATTTTACGGTAGTTTtacttgttcaaggatttaattTCCTGCAACTATAAAATTCc | ||
| ************************************************************ | |||
| rat | ...........((.(((((((...(((..((((.......))))..)))..))))))))) | 0.990 -9.30 |
| rat | chromosome:7:18781544:18781603:-1 | intergenic |
sblock107 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.249 | no | no | 0.37/0.42 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 42 29 | 5arm 3arm | 4 6 | nd nd | 0.53 0.28 | 6 2 | 2 | 1 | -8 | -1 |
| reads | miRBase family seed | ||
| seed | -UGCCUAC------------------------------------------------------------------------------------------------------------ | 1 | miR-24 |
| seed | --------------------------------------------------------------------------------------------------CUUUAUU----------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| CTGCCTACTCTATAACAAG------------------------------------------------------------------------------------------------- | 19 | 1 | |
| -------------------------------------------------------------------------------------------------TCTTTATTCCTAGAGGGAA | 19 | 1 | |
| rat | CTGCCTACTCTATAACAAGaattttggataaaaacagaagttagaccattggaagatgacgaaactaatgtgctgatggtgggctggcttctgctctTCTTTATTCCTAGAGGGAA | ||
| ******************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043239 ENSRNOG00000033820 | ||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||
| rat | ...((..(((((......((((...(((......((((((((((.((((((..((...(((.......))).))..)))))).))))))))))....)))..)))).))))))).. | 0.610 -26.50 |
| rat | chromosome:1:47792394:47792509:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## Same_strand|Intronic_coding|ENSRNOT00000043239|ENSRNOG00000033820 ## ENSRNOG00000033820|protein_coding|| ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock10761 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.111 | no | no | 0.47/0.55 | 19/20/0.25 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 4 3 | 7 6 | 5arm 3arm | 10 10 | nd nd | 0.32 0.25 | 2 2 | 4 | 2 | -1 | 0 |
| reads | miRBase family seed | |||
| seed | -----GGACACC-------------------------------------------------- | 3 | novel | |
| seed | ----------------------------------------CUAUACU--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----TGGACACCTAGGAAGATAC--------------------------------------- | 19 | 2 | 1 | |
| ---------------------------------------ACTATACTCAGGGTGTGCCC--- | 20 | - | 1 | |
| rat | cttgTGGACACCTAGGAAGATACcaaggtcaaagatcccACTATACTCAGGGTGTGCCCaag | |||
| ************************************************************** | ||||
| rat | ((((.((((((((..((..(((....((((...))))....)))..)).)))))).)))))) | 0.710 -15.80 | ||
| rat | chromosome:7:19402238:19402299:-1 | intergenic |
sblock10952 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.141 | no | no | 0.64/0.68 | 19/25/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 1 | 22 0 | 5arm 3arm | 1 1 | nd nd | 0.68 0.16 | 12 1 | 2 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -CUCUGGG---------------------------------------------------------------- | 1 | miR-326/330 | |
| seed | -----------------------------------------------AUCCGGA------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| GCTCTGGGCGAAGGAGGAG----------------------------------------------------- | 19 | 1 | - | |
| ----------------------------------------------AATCCGGAGGGCCAAGCACACCAGG- | 25 | - | 1 | |
| rat | GCTCTGGGCGAAGGAGGAGgtgctcaggcccggcccgcatttatgtAATCCGGAGGGCCAAGCACACCAGGc | |||
| ************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016424 ENSRNOG00000011781 Oplah | |||
| rat | ((.((((............(((((..(((((...(((.(((.....))).))).))))).))))).)))))) | 0.780 -27.22 | ||
| rat | chromosome:7:114337769:114337840:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000056407|ENSRNOG00000011781 ## Same_strand|Intronic_non-coding|ENSRNOT00000016424|ENSRNOG00000011781 ## ENSRNOG00000011781|protein_coding|Oplah|5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase) (Pyroglutamase) (5- OPase). [Source:UniProtKB/Swiss-Prot;Acc:P97608] |
sblock11127 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.65/0.74 | 19/20/0.67 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 2 4 | 28 35 | 5arm 3arm | 1 1 | nd nd | 0.21 0.25 | 3 4 | 3 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------------GGCACUG---------------- | 2 | novel | |
| seed | ---CCCUUGG--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S2 | |||
| -------------------------------------------------------------------------------------------AGGCACTGGGCTCCAACCAC---- | 20 | - | 2 | |
| --TCCCTTGGGGCCTGGGCCA---------------------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | gcTCCCTTGGGGCCTGGGCCAtgcaaataggaaaaggtgtcttggagctgtgatgtggcttcatagtgactgctgcctagtgcaggaggtgAGGCACTGGGCTCCAACCACagca | |||
| ******************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000026893 ENSRNOG00000019857 Gng7 | |||
| rat | (((...((((((((((((((.((((..((((....((((((.(((((((.......)))))))....))).))).)))).))))........))).)))))))))))....))). | 0.940 -45.60 | ||
| rat | chromosome:7:10212363:10212477:1 | Same_strand|Intronic_non-coding|ENSRNOT00000026893|ENSRNOG00000019857 ## ENSRNOG00000019857|protein_coding|Gng7|Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 precursor. [Source:UniProtKB/Swiss-Prot;Acc:P43425] |
sblock11323 [novel_lenNOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.313 | no | no | 0.71/0.74 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 3 | 30 24 | 5arm 3arm | 1 1 | nd nd | 0.21 0.19 | 3 2 | 2 | 2 | -3 | 0 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------------AUGCCCC---------------- | 1 | novel | |
| seed | ---UCGCGGG--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S2 | |||
| --CTCGCGGGGCTGGGAATGC---------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------------------------------GATGCCCCGGGTCTCCACGAG--- | 21 | 1 | - | |
| rat | ggCTCGCGGGGCTGGGAATGCaacctgaacgaggcgggccccagaggcgcgggaggaagggtggggacgtggctggcaacccgctgctcggGATGCCCCGGGTCTCCACGAGctg | |||
| ******************************************************************************************************************* | ||||
| rat | ((((((.(((((((((...(((.(((((....((((((..((((...((((................)))).))))...))))))..))))).))))))))..)))).)))))). | 0.420 -54.09 | ||
| rat | chromosome:7:89671720:89671834:1 | intergenic ## {SimpF: oe = 0.94 1 CpG} |
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