other hairpins
novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH (73 loci)
block1499912 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.133 | no | no | 0.43/0.48 | 21/25/0.67 | 3.3 | 4.7 | 3 | 0 | 1 | 0 | 4 | 0 | 3arm | 2 | nd | 0.38 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------GUAAAAC------------------- | 1 | novel |
| seed | -------------------------------------GAUGAGG------------------------- | 1 | novel |
| seed | -----------------------------------------AGGUAAA--------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------GGTAAAACACCCTGTAAGGAC------ | 21 | 1 | |
| ----------------------------------------GAGGTAAAACACCCTGTAAGGACAC---- | 25 | 1 | |
| ------------------------------------TGATGAGGTAAAACACCCTGT------------ | 21 | 1 | |
| rat | gttggtggagtgacatgggattactccacagaggcaTGATGAGGTAAAACACCCTGTAAGGACACtggc | ||
| ********************************************************************* | |||
| rat | ((..(((.....(((.(((.((((..((((......)).))..))))....)))))).....)))..)) | 0.950 -18.80 |
| rat | chromosome:3:141758781:141758849:1 | intergenic |
block1696379 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.468 | no | no | 0.57/0.58 | 19/23/0.50 | 2.0 | 0.0 | 2 | 0 | 1 | 0 | 0 | 24 | 5arm | 1 | nd | 0.43 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -ACGUGAG------------------------------------------------------------------------------------------ | 1 | novel |
| seed | -----GAGCGCC-------------------------------------------------------------------------------------- | 1 | miR-339 |
| len | cloning frequencies | ||
| T5S1 | |||
| TACGTGAGCGCCTACTGCTTCCT--------------------------------------------------------------------------- | 23 | 1 | |
| ----TGAGCGCCTACTGCTTCCT--------------------------------------------------------------------------- | 19 | 1 | |
| rat | TACGTGAGCGCCTACTGCTTCCTattctccctacttcccaggtgccctgtgacctggttgcctgctagttttagaagaagtcatgcaaagccctctgt | ||
| ************************************************************************************************** | |||
| rat | .(((.(((.((....(((...((.((((....(((...(((((..((........))..)))))..)))...))))..))....)))..)).)))))) | 0.990 -21.70 |
| rat | chromosome:4:164269424:164269521:1 | intergenic |
block1723155 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.276 | no | no | 0.52/0.57 | 19/25/0.50 | 1.2 | 0.8 | 4 | 0 | 1 | 0 | 3 | 12 | 5arm | 2 | nd | 0.36 | 4 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------CCCUCUC--------------------------------------------------------------------------- | 3 | novel |
| seed | ----GAUCUCC-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------TCCCTCTCATAATGCACCCCC-------------------------------------------------------------- | 21 | 2 | |
| --------TCCCTCTCATAATGCACCC---------------------------------------------------------------- | 19 | 1 | |
| ---TGATCTCCCTCTCATAATGCACCCC--------------------------------------------------------------- | 25 | 1 | |
| rat | gatTGATCTCCCTCTCATAATGCACCCCCttttctttctagaggctctggagttgggcaggacagtgcttgggtggctcacggatgggtca | ||
| ******************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------- | ENSRNOT00000047859 ENSRNOG00000024953 LOC678820 | ||
| rat | ((((.((((.((.((((....((((..(((.(((.((((((.....))))))..))).)))...)))).)))).)).....)))).)))). | 0.990 -27.80 |
| rat | chromosome:5:25427425:25427515:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000041129|ENSRNOG00000024953 ## Opposite_strand|Intronic_coding|ENSRNOT00000047859|ENSRNOG00000024953 ## ENSRNOG00000024953|protein_coding|LOC678820| |
block1767178 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.482 | no | no | 0.32/0.35 | 19/20/0.33 | 1.7 | 1.0 | 3 | 0 | 1 | 0 | 0 | 20 | 5arm | 1 | nd | 0.42 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---AGACCUU------------------------------------------------------------------------------ | 1 | novel |
| seed | -CAAGACC-------------------------------------------------------------------------------- | 1 | novel |
| seed | ----GACCUUA----------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --AAGACCTTATTGGATAGAA------------------------------------------------------------------- | 19 | 1 | |
| ---AGACCTTATTGGATAGAAT------------------------------------------------------------------ | 19 | 1 | |
| TCAAGACCTTATTGGATAGA-------------------------------------------------------------------- | 20 | 1 | |
| rat | TCAAGACCTTATTGGATAGAATtatactcacagatttaaagacaagtctgagaatgtgtggcaccaaaagtttgcctgcaggactgga | ||
| **************************************************************************************** | |||
| rat | ((.((.(((....((...(((((....(((((.((((..(((....)))..)))).))))).......))))).))...))).)).)) | 0.430 -15.90 |
| rat | chromosome:5:114561649:114561736:-1 | intergenic |
block1790448 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.580 | no | no | 0.47/0.53 | 19/19/0.00 | 1.5 | 1.5 | 2 | 0 | 2 | 0 | 4 | 9 | 5arm | 1 | nd | 0.47 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----GGGAAAU------------------------------------------------------------------ | 1 | novel | |
| seed | --------AAAUCGU--------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------GAAATCGTGTAATGGCGGA---------------------------------------------------- | 19 | 1 | - | |
| ----GGGGAAATCGTGTAATGGC------------------------------------------------------- | 19 | - | 1 | |
| rat | gggcGGGGAAATCGTGTAATGGCGGActcaggccggtggagtgcggttgggggcgtagcgcgctgaggggggcgtccg | |||
| ****************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056194 ENSRNOG00000037205 | |||
| rat | (((((......((((((....(((..((((.((((........))))))))..)))...)))).))......))))). | 0.850 -25.80 | ||
| rat | chromosome:5:151991793:151991870:-1 | Same_strand|Intronic_coding|ENSRNOT00000056194|ENSRNOG00000037205 ## ENSRNOG00000037205|protein_coding|| |
block913821 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.235 | no | no | 0.74/0.74 | 19/23/0.50 | 1.5 | 3.5 | 2 | 0 | 2 | 0 | 2 | 6 | 5arm | 1 | nd | 0.32 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---GCCUGAG--------------------------------------------------------------- | 1 | novel | |
| seed | ------UGAGCGG------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| --AGCCTGAGCGGCAACCGGC---------------------------------------------------- | 19 | - | 1 | |
| -----CTGAGCGGCAACCGGCCCGAGGA--------------------------------------------- | 23 | 1 | - | |
| rat | ggAGCCTGAGCGGCAACCGGCCCGAGGAggggcttcagagccgcggccgtgggcgggcgatgctgcagctgcc | |||
| ************************************************************************* | ||||
| rat | (((((....((((((.((.(((((.((...((((....))))....)).))))).))...)))))).))).)) | 0.990 -33.50 | ||
| rat | chromosome:1:208100566:208100638:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH (71 loci)
sblock11295 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.33/0.50 | 18/24/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 14 18 | 13 4 | 5arm 3arm | 7 17 | nd nd | 0.33 0.33 | 6 3 | 3 | 3 | -10 | -1 |
| reads | miRBase family seed | ||||
| seed | ---------------AGGGGUU------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------UCAGUAA---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S1 | |||
| --------------TAGGGGTTAAACTTTAGT-------------------------------------------------------------------- | 18 | 1 | 1 | - | |
| ----------------------------------------------------------CTCAGTAAGCACTGATCTACCCTC------------------ | 24 | - | - | 1 | |
| rat | ttgtaaaacgggggTAGGGGTTAAACTTTAGTgtttgtgtatgcacaactcatatgtaCTCAGTAAGCACTGATCTACCCTCtctgcctatgtcctatgg | ||||
| **************************************************************************************************** | |||||
| rat | ..(((..(((.((((((((((......((((((((((((..((((.........))))..)).))))))))))...))))...)))))).)))..))).. | 0.900 -27.30 | |||
| rat | chromosome:7:61742889:61742988:1 | intergenic |
sblock11296 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.33/0.50 | 18/24/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 19 31 | 13 4 | 5arm 3arm | 7 17 | nd nd | 0.33 0.33 | 6 3 | 3 | 3 | -10 | -1 |
| reads | miRBase family seed | ||||
| seed | --------------------AGGGGUU------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------------UCAGUAA----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S1 | |||
| -------------------TAGGGGTTAAACTTTAGT--------------------------------------------------------------------------------- | 18 | 1 | 1 | - | |
| ---------------------------------------------------------------CTCAGTAAGCACTGATCTACCCTC------------------------------- | 24 | - | - | 1 | |
| rat | tctgactgtaaaacgggggTAGGGGTTAAACTTTAGTgtttgtgtctgcacagctcatatgtaCTCAGTAAGCACTGATCTACCCTCtctgcctatgtcctatgtgttaacagccagg | ||||
| ********************************************************************************************************************** | |||||
| rat | .(((.((((...(((.((((((((((......((((((((((((..((((.........))))..)).))))))))))...))))...))))))........)))....)))).))). | 0.830 -32.20 | |||
| rat | chromosome:7:61814607:61814724:1 | intergenic |
sblock11297 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.33/0.50 | 18/24/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 14 18 | 13 4 | 5arm 3arm | 7 17 | nd nd | 0.33 0.33 | 6 3 | 3 | 3 | -10 | -1 |
| reads | miRBase family seed | ||||
| seed | ---------------AGGGGUU------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------UCAGUAA---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S1 | |||
| --------------TAGGGGTTAAACTTTAGT-------------------------------------------------------------------- | 18 | 1 | 1 | - | |
| ----------------------------------------------------------CTCAGTAAGCACTGATCTACCCTC------------------ | 24 | - | - | 1 | |
| rat | ctgtaaaacgggggTAGGGGTTAAACTTTAGTgtttgtgtatgcacagctcatatgtaCTCAGTAAGCACTGATCTACCCTCtctgcctatgtcctatgg | ||||
| **************************************************************************************************** | |||||
| rat | (((((..(((.((((((((((......((((((((((((..((((.........))))..)).))))))))))...))))...)))))).)))..))))) | 0.910 -28.70 | |||
| rat | chromosome:7:61818624:61818723:1 | intergenic |
sblock1203 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.546 | no | no | 0.53/0.61 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 17 | 9 2 | 5arm 3arm | 1 11 | nd nd | 0.50 0.47 | 4 5 | 2 | 2 | 0 | -3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------GUGAGCA---------------------------- | 1 | novel | |
| seed | -----------AGACUCA-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------GAGACTCAGGGTGTGGAG---------------------------------------------------- | 18 | - | 1 | |
| --------------------------------------------AGTGAGCATGTCTTGGGAC----------------- | 19 | 1 | - | |
| rat | gtggcctgcaGAGACTCAGGGTGTGGAGggtagagccagggaggAGTGAGCATGTCTTGGGACctgacagccaggcggct | |||
| ******************************************************************************** | ||||
| rat | ((.((((((((...((((((..(((..........((.....))......)))..))))))..))).....))))).)). | 0.470 -22.89 | ||
| rat | chromosome:1:33727446:33727525:1 | intergenic |
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