other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH (71 loci)
sblock933 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.270 | no | no | 0.39/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 13 | 17 9 | 5arm 3arm | 8 12 | nd nd | 0.33 0.33 | 4 3 | 2 | 2 | -8 | -4 |
| reads | miRBase family seed | |||
| seed | --------UAUAUUG----------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------CAAGGAA----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| -------------------------------------------------------GCAAGGAATTAGGCCACA------------- | 18 | 1 | - | |
| -------ATATATTGGCCCACTTGA------------------------------------------------------------- | 18 | - | 1 | |
| rat | ttgaggaATATATTGGCCCACTTGAtaccccgtataggctctagcaagatgctgtGCAAGGAATTAGGCCACAgatacgacttgga | |||
| ************************************************************************************** | ||||
| rat | (((((...(((..(((((....((((.((..(((((.(((((....))).)))))))..)).)))))))))...)))...))))). | 0.990 -19.50 | ||
| rat | chromosome:1:203020312:203020397:-1 | intergenic |
sblock934 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.536 | no | no | 0.47/0.56 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 2 | 1 10 | 5arm 3arm | 7 12 | nd nd | 0.33 0.42 | 4 4 | 2 | 2 | 7 | 8 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------CUUGUGU------------- | 1 | novel | |
| seed | -----------GGACACA---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T4S2 | |||
| ----------AGGACACACATCGAACCC------------------------------------ | 18 | - | 1 | |
| -------------------------------------------CCTTGTGTTTCTCAGGAAG-- | 19 | 1 | - | |
| rat | gcaatattgtAGGACACACATCGAACCCtgtcaaggcctgagaCCTTGTGTTTCTCAGGAAGgc | |||
| **************************************************************** | ||||
| rat | ((....(((..(((((((..((....(((....))).....))...)))))))..)))....)) | 0.440 -13.10 | ||
| rat | chromosome:1:203020606:203020669:-1 | intergenic |
sblock937 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.270 | no | no | 0.39/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 13 | 17 9 | 5arm 3arm | 8 12 | nd nd | 0.33 0.33 | 4 3 | 2 | 2 | -8 | -4 |
| reads | miRBase family seed | |||
| seed | --------UAUAUUG----------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------CAAGGAA----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| -------------------------------------------------------GCAAGGAATTAGGCCACA------------- | 18 | 1 | - | |
| -------ATATATTGGCCCACTTGA------------------------------------------------------------- | 18 | - | 1 | |
| rat | ttgaggaATATATTGGCCCACTTGAtaccccgtataggctctagcaagatgctgtGCAAGGAATTAGGCCACAgatacgacttgga | |||
| ************************************************************************************** | ||||
| rat | (((((...(((..(((((....((((.((..(((((.(((((....))).)))))))..)).)))))))))...)))...))))). | 0.990 -19.50 | ||
| rat | chromosome:1:203028033:203028118:-1 | intergenic |
sblock939 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.270 | no | no | 0.39/0.50 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 13 | 17 9 | 5arm 3arm | 8 12 | nd nd | 0.33 0.33 | 4 3 | 2 | 2 | -8 | -4 |
| reads | miRBase family seed | |||
| seed | --------UAUAUUG----------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------CAAGGAA----------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| -------------------------------------------------------GCAAGGAATTAGGCCACA------------- | 18 | 1 | - | |
| -------ATATATTGGCCCACTTGA------------------------------------------------------------- | 18 | - | 1 | |
| rat | ttgaggaATATATTGGCCCACTTGAtaccccgtataggctctagcaagatgctgtGCAAGGAATTAGGCCACAgatacgacttgga | |||
| ************************************************************************************** | ||||
| rat | (((((...(((..(((((....((((.((..(((((.(((((....))).)))))))..)).)))))))))...)))...))))). | 0.990 -19.50 | ||
| rat | chromosome:1:203031870:203031955:-1 | intergenic |
sblock942 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.839 | no | no | 0.50/0.53 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 32 23 | 0 0 | 5arm 3arm | 13 13 | nd nd | 0.42 0.41 | 2 4 | 2 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------GAGAUCA------------------------------------- | 1 | novel | |
| seed | ---------------------------------UAGCAAC------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| --------------------------------------------------------CGAGATCAAAACAGGCAGGGAA----------------------- | 22 | - | 1 | |
| --------------------------------CTAGCAACTGTGCATACCG-------------------------------------------------- | 19 | 1 | - | |
| rat | gacactcagcataagaaactacatcttttcttCTAGCAACTGTGCATACCGaccgtCGAGATCAAAACAGGCAGGGAAttactgggtaggccttaggtgtc | |||
| ***************************************************************************************************** | ||||
| rat | ((((((.....((((...((((........((((.((..((((..((..((.....))..))....)))))).))))........))))..)))))))))) | 0.730 -18.79 | ||
| rat | chromosome:1:203036761:203036861:-1 | intergenic |
sblock943 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.839 | no | no | 0.50/0.53 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 32 23 | 0 0 | 5arm 3arm | 13 13 | nd nd | 0.42 0.41 | 2 4 | 2 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------GAGAUCA------------------------------------- | 1 | novel | |
| seed | ---------------------------------UAGCAAC------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| --------------------------------------------------------CGAGATCAAAACAGGCAGGGAA----------------------- | 22 | - | 1 | |
| --------------------------------CTAGCAACTGTGCATACCG-------------------------------------------------- | 19 | 1 | - | |
| rat | gacactcagcataagaaactacatcttttcttCTAGCAACTGTGCATACCGaccgtCGAGATCAAAACAGGCAGGGAAttactgggtaggccttaggtgtc | |||
| ***************************************************************************************************** | ||||
| rat | ((((((.....((((...((((........((((.((..((((..((..((.....))..))....)))))).))))........))))..)))))))))) | 0.730 -18.79 | ||
| rat | chromosome:1:203064499:203064599:-1 | intergenic |
sblock9687 [novel_lenNOK_multiarm_DicerNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.259 | no | no | 0.47/0.56 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 1 | 13 20 | 5arm 3arm | 22 22 | nd nd | 0.37 0.39 | 4 2 | 2 | 1 | 6 | 5 |
| reads | miRBase family seed | ||
| seed | --------UUACAAG-------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------AGGACCA----------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------------TAGGACCAGTCAGCACTG- | 18 | 1 | |
| -------CTTACAAGTCTCTCCAGTC--------------------------------------------------------- | 19 | 1 | |
| rat | cagccatCTTACAAGTCTCTCCAGTCacagcctccaggaccatctccttgctgcctttggctccTAGGACCAGTCAGCACTGt | ||
| *********************************************************************************** | |||
| --------------------------------------------------------------------------------------------- | ENSRNOT00000009718 ENSRNOG00000007256 Efcbp1 | ||
| rat | (((....((.((..((((....(((((((((....((((.....)))).))))....)))))....))))..)).))..))). | 0.670 -16.30 |
| rat | chromosome:5:29514931:29515013:1 | Opposite_strand|Intronic_coding|ENSRNOT00000009718|ENSRNOG00000007256 ## ENSRNOG00000007256|protein_coding|Efcbp1|N-terminal EF-hand calcium-binding protein 1 (EF-hand calcium-binding protein 1) (Neuronal calcium-binding protein 1) (Synaptotagmin- interacting protein 1) (Stip-1). [Source:UniProtKB/Swiss-Prot;Acc:Q9ESB5] |
block27778 [novel_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.213 | no | no | 0.40/0.45 | 20/20/1.00 | 1.5 | 1.5 | 2 | 0 | 2 | 0 | 31 | 3 | 3arm | 1 | nd | 0.25 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------CCAGAUU------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------UCCCCAG---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| -------------------------------------------------------------------CCCAGATTGTAAGAGTTCAC------------------------------- | 20 | 1 | - | |
| ----------------------------------------------------------------TTCCCCAGATTGTAAGAGTT---------------------------------- | 20 | - | 1 | |
| rat | actgacatgaaggcaagcattgatttcatatgaacgttgcagaggtggtaattggaaaaaacagTTCCCCAGATTGTAAGAGTTCACtgaagatatcgacacaattttaaaaatcagt | |||
| ********************************************************************************************************************** | ||||
| rat | (((((..(((((.......(((((((((..(((((.((((((.((.((.(((((.......)))))))))...))))))..))))).))))...))))).....)))))....))))) | 0.530 -23.00 | ||
| rat | chromosome:10:61954420:61954537:-1 | intergenic |
block54372 [novel_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.464 | no | no | 0.38/0.40 | 20/24/1.00 | 3.5 | 1.5 | 2 | 0 | 2 | 0 | 23 | 3 | 5arm | 1 | 12 | 0.25 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------GUUGAUU----------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------GAUCUUU------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ------------------------------TGTTGATTTAGTCACTCCCT----------------------------------------------------------------- | 20 | 1 | - | |
| -----------------------GGATCTTTGTTGATTTAGTCACTC-------------------------------------------------------------------- | 24 | - | 1 | |
| rat | gctaggaatgcaaagtctgttttGGATCTTTGTTGATTTAGTCACTCCCTtgtcccttgcagcagtcaacattaaaactgcagagatttacagagcttcctttcaagatcgtggc | |||
| ******************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047367 ENSRNOG00000003326 RGD1305001_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004429 ENSRNOG00000003326 RGD1305001_predicted | |||
| rat | ((((.((.((.((((...(((((((((((((((...((((((.(((...((((.....)))).)))....))))))...)))))))))..))))))...))))))...)).)))) | 0.780 -23.80 | ||
| rat | chromosome:10:1542856:1542970:1 | Same_strand|Intronic_coding|ENSRNOT00000004429|ENSRNOG00000003326 ## Same_strand|Boundary_non-coding|ENSRNOT00000004459|ENSRNOG00000003326 ## Same_strand|Intronic_non-coding|ENSRNOT00000047367|ENSRNOG00000003326 ## ENSRNOG00000003326|protein_coding|RGD1305001_predicted| |
block88217 [novel_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.194 | no | no | 0.24/0.40 | 20/25/0.80 | 4.4 | 6.6 | 5 | 0 | 4 | 0 | 9 | 6 | 3arm | 1 | nd | 0.04 | 1 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------UGCGUUU---------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------GCGUUUU--------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------CAUUUUA-------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------UUUUCAU------------------------------ | 1 | novel | |||
| seed | ------------------------------------------------------------------------------AUUUUAG------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S1 | T3S2 | T5S2 | |||
| ----------------------------------------------------------------------------TCATTTTAGGTCTTTGTTTTGTTTT--------- | 25 | - | - | - | 1 | |
| ------------------------------------------------------------------------GTTTTCATTTTAGGTCTTTG------------------ | 20 | - | 1 | - | - | |
| -----------------------------------------------------------------------------CATTTTAGGTCTTTGTTTTGTTTT--------- | 24 | - | - | 1 | - | |
| ---------------------------------------------------------------------TGCGTTTTCATTTTAGGTCTTT------------------- | 22 | - | 1 | - | - | |
| --------------------------------------------------------------------GTGCGTTTTCATTTTAGGTC---------------------- | 20 | 1 | - | - | - | |
| rat | ggtactaaagatagttaacagctgaaccaaaaggctaaaagtggcttctcctacttcttacttaggcaGTGCGTTTTCATTTTAGGTCTTTGTTTTGTTTTatcagtact | |||||
| ************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009077 ENSRNOG00000023698 Tex14_predicted | |||||
| rat | ((((((...(((((..((((...((((..(((((((.((((((((..((((((.........)))).)).)).....)))))).)))))))))))))))))))))))))) | 0.980 -23.00 | ||||
| rat | chromosome:10:75737211:75737320:1 | Same_strand|Boundary_non-coding|ENSRNOT00000055770|ENSRNOG00000023698 ## Same_strand|Intronic_non-coding|ENSRNOT00000009077|ENSRNOG00000023698 ## ENSRNOG00000023698|protein_coding|Tex14_predicted| |
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