other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK (67 loci)
sblock9380 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.37/0.53 | 18/25/0.07 | 0.0 0.0 1.0 | 0.0 0.0 4.0 | 4 20 4 | 0 0 0 | 3 1 1 | 0 0 0 | 6 23 1 | 24 7 8 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.26 0.74 0.15 | 3 11 2 | 29 | 3 | 1 | 21 |
| reads | miRBase family seed | ||||
| seed | ------------------------GCAAUAG---------------------------------------------------------------- | 21 | novel | ||
| seed | -------AGAGACC--------------------------------------------------------------------------------- | 4 | novel | ||
| seed | --------------------------------------------------------------------AGGAAGC-------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------------------GAAGCAC------------------ | 2 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| -----------------------TGCAATAGAAAGTCAGGTA----------------------------------------------------- | 19 | - | 20 | - | |
| ------TAGAGACCAGGTCATGCTG---------------------------------------------------------------------- | 19 | 1 | 2 | 1 | |
| ---------------------------------------------------------------------GGAAGCACTGAGGTTTCTAGGAGAC- | 25 | - | 1 | - | |
| -----------------------TGCAATAGAAAGTCAGGT------------------------------------------------------ | 18 | - | 1 | - | |
| -------------------------------------------------------------------GAGGAAGCACTGAGGTTTC--------- | 19 | - | 1 | - | |
| ---------------------------------------------------------------------GGAAGCACTGAGGTTTCTAGGAGA-- | 24 | - | 1 | - | |
| -------------------------------------------------------------------GAGGAAGCACTGAGGTTTCT-------- | 20 | - | 1 | - | |
| rat | tgtatatagagaccaggtcatgcTGCAATAGAAAGTCAGGTAtttgggctgaatattttgccctaatgaggaagcactgaggtttctaggagaca | ||||
| *********************************************************************************************** | |||||
| rat | .((...((((((((...(((((((...........((...((((.((((..........)))).))))..)))))).)))))))))))....)). | 0.620 -23.90 | |||
| rat | chromosome:5:114519327:114519421:-1 | intergenic |
sblock9398 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.16/0.46 | 19/26/0.07 | 0.0 0.0 0.5 0.0 | 0.5 0.0 0.5 0.0 | 2 1 8 1 | 0 0 0 0 | 1 1 4 1 | 0 0 0 0 | 0 23 16 6 | 33 4 1 13 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.80 0.50 0.53 0.26 | 15 8 9 3 | 15 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------CAAAACC--------------------------- | 9 | novel | |||
| seed | --------------------------------------------------------------AUCAAAA----------------------------- | 2 | novel | |||
| seed | -CUACUUU------------------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ------------------------CCCACUU------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------UUUUAUA----------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S1 | T5S1 | |||
| ---------------------------------------------------------------TCAAAACCATCTTTTATAT---------------- | 19 | 1 | 1 | 1 | 6 | |
| -------------------------------------------------------------AATCAAAACCATCTTTTAT------------------ | 19 | - | - | - | 2 | |
| TCTACTTTTATATAAAGATG------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| TCTACTTTTATATAAAGAT------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -----------------------TCCCACTTTTATGCTGAGTCTTCCCT------------------------------------------------- | 26 | - | - | - | 1 | |
| -------------------------------------------------------------------------CTTTTATATAAGTGTCCAC------ | 19 | - | - | - | 1 | |
| rat | tctacttttatataaagatgctgtcccacttttatgctgagtcttccctattaatttacatAATCAAAACCATCTTTTATATaagtgtccacagctca | |||||
| ************************************************************************************************** | ||||||
| rat | ................((.(((((..(((((.((((..(((........((((.......)))).........))).)))).)))))...))))))). | 0.710 -13.33 | ||||
| rat | chromosome:5:114526357:114526454:-1 | intergenic |
sblock9456 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.222 | no | no | 0.37/0.53 | 18/26/0.14 | 0.0 0.0 0.3 0.0 3.0 0.0 | 0.0 0.0 2.3 0.0 1.0 0.0 | 1 1 6 1 2 20 | 0 0 0 0 0 0 | 1 1 2 1 2 2 | 0 0 0 0 0 0 | 0 12 19 33 13 1 | 39 31 16 10 -3 15 | 5arm 5arm 5arm 5arm 3arm 3arm | 1 1 1 1 1 2 | nd nd nd nd nd nd | 0.87 0.53 0.28 0.42 0.11 0.32 | 14 8 4 6 2 4 | 35 | 4 | 6 | 1 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------------------UCCUAAA------------ | 22 | novel | |||
| seed | --------------------CUCAAAG----------------------------------------------------------------------------- | 5 | novel | |||
| seed | -------------------------------------------------------------------------------CCUUCUU------------------ | 2 | novel | |||
| seed | -------------UUGCCCU------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------CAAAGGU--------------------------------------------------------------------------- | 1 | novel | |||
| seed | -CAGUUGU------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -------------------------------------------------------------------GGAGAUC------------------------------ | 1 | novel | |||
| seed | -------------------------------------------------------------------------CCCUUUC------------------------ | 1 | novel | |||
| seed | ----------------------------------UGGAGGG--------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| ------------------------------------------------------------------------------------TTCCTAAAGCACCATCAGG- | 19 | 1 | - | - | 20 | |
| -------------------TCTCAAAGGTGTTATTGGAGGGA-------------------------------------------------------------- | 23 | - | - | - | 2 | |
| ------------------------------------------------------------------------------TCCTTCTTCCTAAAGCACCATCAGG- | 25 | - | - | - | 2 | |
| ------------------------------------------------------------------TGGAGATCCCTTTCCTTCTTCCT--------------- | 23 | - | - | - | 1 | |
| TCAGTTGTCACTCTTGCCCTCTC--------------------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| -------------------TCTCAAAGGTGTTATTGGA------------------------------------------------------------------ | 19 | 1 | - | - | - | |
| -------------------TCTCAAAGGTGTTATTGGAG----------------------------------------------------------------- | 20 | - | - | - | 1 | |
| ------------------------------------------------------------------------TCCCTTTCCTTCTTCCTAA------------- | 19 | - | 1 | - | - | |
| ------------CTTGCCCTCTCAAAGGTGT------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------TCAAAGGTGTTATTGGAGGGAAGGA---------------------------------------------------------- | 25 | - | - | - | 1 | |
| ---------------------------------TTGGAGGGAAGGAGCTGAA---------------------------------------------------- | 19 | - | - | 1 | - | |
| -------------------TCTCAAAGGTGTTATTGGAGGGAAGG----------------------------------------------------------- | 26 | - | - | - | 1 | |
| ------------------------------------------------------------------------------------TTCCTAAAGCACCATCAG-- | 18 | - | - | - | 1 | |
| rat | tcagttgtcactcttgccctctcaaaggtgttattggagggaaggagctgaagttagggtctgacatggagatccctttccttcTTCCTAAAGCACCATCAGGc | |||||
| ******************************************************************************************************** | ||||||
| rat | ...............(((........((((((.((((..((((((((........(((((((.......))).))))))))))))..))))))))))....))) | 0.460 -29.30 | ||||
| rat | chromosome:5:114564493:114564596:-1 | intergenic |
sblock9654 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.679 | no | no | 0.17/0.53 | 18/22/0.08 | 0.0 0.0 | 0.3 0.0 | 6 1 | 0 0 | 5 1 | 0 0 | 22 34 | 12 7 | 5arm 3arm | 1 2 | nd nd | 0.21 0.11 | 3 1 | 12 | 5 | -5 | -4 |
| reads | miRBase family seed | ||||||
| seed | -----------------------UUUUUGG---------------------------------------------------------------------------------------- | 11 | novel | ||||
| seed | -------------------------------------------------------------------CUUUUUU-------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S2 | T5S1 | |||
| ----------------------TTTTTTGGTTTGGGGGGGG----------------------------------------------------------------------------- | 19 | 4 | 1 | 1 | - | 1 | |
| ----------------------TTTTTTGGTTTGGGGGGG------------------------------------------------------------------------------ | 18 | 2 | - | - | 1 | - | |
| ----------------------TTTTTTGGTTTGGGGGGGGAAA-------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | |
| ------------------------------------------------------------------TCTTTTTTATTATACCAA---------------------------------- | 18 | - | - | - | 1 | - | |
| rat | gaggggcagcatggttggtattTTTTTTGGTTTGGGGGGGGaaagtgtattagttttgtttggttttcttttttattataccaaaatataatctacacaaaaaacataggcttgactc | ||||||
| ********************************************************************************************************************** | |||||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000032064 ENSRNOG00000005391 Depdc2 | ||||||
| rat | (((.(((...(((.((((((..(((((((((.(((...(((((((...(((((......)))))...))))))).))).)))))))...))..))).)))....)))..)))...))) | 1.000 -21.00 | |||||
| rat | chromosome:5:7707959:7708076:1 | Opposite_strand|Intronic_coding|ENSRNOT00000032064|ENSRNOG00000005391 ## ENSRNOG00000005391|protein_coding|Depdc2|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 Gene [Source:MGI Symbol;Acc:MGI:1923385] ## {Repeats: dust 7708009 7708031 0 class=dust,dust 7707979 7707987 0 class=dust} |
sblock9806 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.194 | no | no | 0.68/0.79 | 18/23/0.58 | 0.0 0.0 | 0.0 1.8 | 1 16 | 0 0 | 1 7 | 0 0 | 22 29 | 14 5 | 5arm 3arm | 1 1 | nd nd | 0.21 0.28 | 2 4 | 24 | 7 | -8 | -6 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------------------------GGCGCCU-------------------------------------------- | 23 | novel | ||||||
| seed | -----------------------CCGCCCA------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------CGGCGCCTTCTGAGGGTCTCCAG----------------------------- | 23 | 1 | 3 | - | 1 | - | - | 2 | |
| ---------------------------------------------------------------CGGCGCCTTCTGAGGGTCTCCA------------------------------ | 22 | 5 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------CGGCGCCTTCTGAGGGTC---------------------------------- | 18 | 3 | 3 | - | - | - | - | - | |
| ---------------------------------------------------------------CGGCGCCTTCTGAGGGTCT--------------------------------- | 19 | - | - | - | - | 1 | 1 | 1 | |
| ---------------------------------------------------------------CGGCGCCTTCTGAGGGTCTC-------------------------------- | 20 | - | 1 | - | - | - | - | - | |
| ----------------------GCCGCCCAGGCAGACCCAG-------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| rat | acccagatcccggaagccggaagccgcccaggcagacccaggggcggcgcccagcggagcaggCGGCGCCTTCTGAGGGTCTCCAGgacccggtggcccggcgtgtcttcctggg | ||||||||
| ******************************************************************************************************************* | |||||||||
| rat | .(((((.....(((.(((((..((((((..((.((((((.((((((.((((..((...)).)))).))))))....)))))))).......)))))))))))...)))..))))) | 0.600 -58.50 | |||||||
| rat | chromosome:5:141529756:141529870:1 | intergenic |
sblock9809 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.70/0.81 | 18/23/0.50 | 0.0 0.0 0.9 | 0.7 0.0 1.6 | 3 1 8 | 0 0 0 | 1 1 2 | 0 0 0 | 10 31 30 | 23 3 7 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.21 0.15 0.20 | 2 2 2 | 12 | 2 | -19 | -15 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------CCGCGGA----------------------------------------------- | 4 | novel | |
| seed | --------------------------------------------------------------------GCGGACG--------------------------------------------- | 3 | novel | |
| seed | -----------GGCUUCG------------------------------------------------------------------------------------------------------ | 3 | novel | |
| seed | -------------------------------------------------------------------CGCGGAC---------------------------------------------- | 1 | novel | |
| seed | --------------------------------GAGCCUG--------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------------------------------------CCCGCGGACGTCCAGGCTC------------------------------------ | 19 | - | 3 | |
| ----------CGGCTTCGACGCGGACCCTAC----------------------------------------------------------------------------------------- | 21 | 2 | - | |
| -------------------------------AGAGCCTGTCGTCCGCCCGA--------------------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------------------------------------CGCGGACGTCCAGGCTCCGAGCC------------------------------ | 23 | - | 1 | |
| ----------CGGCTTCGACGCGGACCCT------------------------------------------------------------------------------------------- | 19 | 1 | - | |
| -------------------------------------------------------------------CGCGGACGTCCAGGCTCCGA--------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------CGCGGACGTCCAGGCTCC----------------------------------- | 18 | - | 1 | |
| ------------------------------------------------------------------CCGCGGACGTCCAGGCTCC----------------------------------- | 19 | 1 | - | |
| -----------------------------------------------------------------CCCGCGGACGTCCAGGCTCCG---------------------------------- | 21 | - | 1 | |
| rat | actggggaggCGGCTTCGACGCGGACCCTACAGAGCCTGTCGTCCGCCCGAtagccagcttcatcCCCGCGGACGTCCAGGCTCCGAGCCatctagcgactcggcgagcggcctcaggta | |||
| ************************************************************************************************************************ | ||||
| rat | (((...(((((.(((((((((((((..((...(((((((.(((((((..(((((....))..)))...)))))))..)))))))..))...))).)))..)))..)))).))))).))). | 0.920 -52.10 | ||
| rat | chromosome:5:142490178:142490297:1 | intergenic ## {SimpF: oe = 0.94 1 CpG} |
sblock3312 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.960 | no | no | 0.47/0.58 | 18/25/0.42 | 0.0 0.0 | 0.0 2.1 | 2 10 | 0 0 | 1 4 | 0 0 | 15 18 | 17 7 | 5arm 3arm | 2 3 | nd nd | 0.32 0.17 | 3 3 | 12 | 4 | -14 | -4 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------GCCAAGU----------------------------------- | 10 | novel | |||
| seed | ----------------GUCAGGU------------------------------------------------------------------------------------------ | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S1 | T5S1 | |||
| ----------------------------------------------------------------------TGCCAAGTGTCTTTGTCCTTCCC-------------------- | 23 | - | - | 1 | 3 | |
| ---------------TGTCAGGTGGAAGGGAGAC------------------------------------------------------------------------------- | 19 | - | - | - | 2 | |
| ----------------------------------------------------------------------TGCCAAGTGTCTTTGTCCT------------------------ | 19 | 1 | - | - | 1 | |
| ----------------------------------------------------------------------TGCCAAGTGTCTTTGTCC------------------------- | 18 | 2 | - | - | - | |
| ----------------------------------------------------------------------TGCCAAGTGTCTTTGTCCTTCC--------------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------------------TGCCAAGTGTCTTTGTCCTTCCCTG------------------ | 25 | - | - | - | 1 | |
| rat | ggggtcaggtgccacTGTCAGGTGGAAGGGAGACgtggacatgcgctgtggctgagcccccccccccagaTGCCAAGTGTCTTTGTCCTTCCCTGcagagagaggcttgttct | |||||
| ***************************************************************************************************************** | ||||||
| rat | .((..((...(((.((.((.((.((((((...(((.((((((((((((.((............)).))).)))...)))))).)))))))))))...)).)).))).))..)) | 0.420 -33.60 | ||||
| rat | chromosome:12:44282678:44282790:-1 | intergenic |
sblock3623 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.994 | no | no | 0.47/0.58 | 18/25/0.42 | 0.0 0.0 | 0.0 2.1 | 2 10 | 0 0 | 1 4 | 0 0 | 15 19 | 17 7 | 5arm 3arm | 2 3 | nd nd | 0.32 0.17 | 3 3 | 12 | 4 | -14 | -4 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------GCCAAGU------------------------------------ | 10 | novel | |||
| seed | ----------------GUCAGGU--------------------------------------------------------------------------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S1 | T5S1 | |||
| ------------------------------------------------------------------------TGCCAAGTGTCTTTGTCCTTCCC--------------------- | 23 | - | - | 1 | 3 | |
| ------------------------------------------------------------------------TGCCAAGTGTCTTTGTCCT------------------------- | 19 | 1 | - | - | 1 | |
| ---------------TGTCAGGTGGAAGGGAGAC---------------------------------------------------------------------------------- | 19 | - | - | - | 2 | |
| ------------------------------------------------------------------------TGCCAAGTGTCTTTGTCC-------------------------- | 18 | 2 | - | - | - | |
| ------------------------------------------------------------------------TGCCAAGTGTCTTTGTCCTTCCCTG------------------- | 25 | - | - | - | 1 | |
| ------------------------------------------------------------------------TGCCAAGTGTCTTTGTCCTTCC---------------------- | 22 | - | 1 | - | - | |
| rat | ggggtcaggtgccacTGTCAGGTGGAAGGGAGACgtggacatgcgctgtggctgagcccccccccccccagaTGCCAAGTGTCTTTGTCCTTCCCTGcagagagaggcttgttctt | |||||
| ******************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||||
| rat | .((..((...(((.((.((.((.((((((...(((.((((((((((((.((..............)).))).)))...)))))).)))))))))))...)).)).))).))..)). | 0.410 -33.54 | ||||
| rat | chromosome:12:43049300:43049415:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
sblock8993 [novel_lenNOK_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.50/0.58 | 18/23/0.27 | 0.0 0.9 | 0.0 1.7 | 1 14 | 0 0 | 1 6 | 0 0 | 32 13 | 5 21 | 5arm 3arm | 2 8 | nd nd | 0.39 0.26 | 4 3 | 15 | 7 | 15 | 20 |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------------------------------------------------------AGCUUGG------------------------------ | 11 | novel | ||||||
| seed | ---------------------------------AAAACAA------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------------------------------------------------------GGGGAAG------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------------UUGGGGA--------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------------------UGGGGAA-------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------GAGCTTGGGGAAGGAAGTC------------------- | 19 | 1 | 3 | - | - | 3 | - | - | |
| --------------------------------------------------------------------------------GAGCTTGGGGAAGGAAGTCTCTC--------------- | 23 | - | - | - | - | 1 | - | 1 | |
| -------------------------------------------------------------------------------------TGGGGAAGGAAGTCTCTC--------------- | 18 | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------------------------------TTGGGGAAGGAAGTCTCT---------------- | 18 | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------GAGCTTGGGGAAGGAAGT-------------------- | 18 | 1 | - | - | - | - | - | - | |
| --------------------------------CAAAACAAGAGGCTGGGG-------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------CTTGGGGAAGGAAGTCTCTCTG------------- | 22 | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------GAGCTTGGGGAAGGAAGTCTC----------------- | 21 | - | - | 1 | - | - | - | - | |
| rat | cctttttgtccaataaaaaaggctcttttcagCAAAACAAGAGGCTGGGGattgctttagcgataaaccagttctcgctgGAGCTTGGGGAAGGAAGTCTCTCTGtggaggtctgagg | ||||||||
| ********************************************************************************************************************** | |||||||||
| rat | ((((....((((.......((((((((((((((....((.((((((((..(((((....)))))...))))).)))..))..)))...))))))).)))).....)))).....)))) | 0.630 -35.40 | |||||||
| rat | chromosome:4:123779601:123779718:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK (67 loci)
sblock10035 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 13 30 | 23 -3 | 5arm 3arm_loop | 1 1 | nd nd | 0.50 0.22 | 5 2 | 2 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | --------------UUGGUUU----------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------AACAGUG---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------TTTGGTTTCTTGGCCCCC------------------------------------------------------------------------- | 18 | 1 | |
| --------------------------------------------------------TAACAGTGAACCCCAGGG------------------------------ | 18 | 1 | |
| rat | agaggtaacacctTTTGGTTTCTTGGCCCCCcaggcctgggacatatttcactggcTAACAGTGAACCCCAGGGctgattctccatcagagcatctgttccctc | ||
| ******************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009028 ENSRNOG00000006911 LOC314251 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009512 ENSRNOG00000006911 LOC314251 | ||
| rat | .((((.((((.....((.(((..(((.....(((.((((((......(((((((.....))))))).)))))).))).....)))..))).))..)))).)))) | 0.790 -37.50 |
| rat | chromosome:6:99219067:99219170:-1 | Same_strand|Intronic_coding|ENSRNOT00000009028|ENSRNOG00000006911 ## ENSRNOG00000006911|protein_coding|LOC314251|erythroid spectrin beta [Source:RefSeq_peptide;Acc:NP_997687] |
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