other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK (67 loci)
sblock9054 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.50/0.62 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 11 | 8 -1 | 5arm 3arm | 1 1 | nd nd | 0.33 0.17 | 2 2 | 2 | 1 | -9 | -11 |
| reads | miRBase family seed | ||
| seed | -CCUACAC------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------CCAUUUG--------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---------------------------------CCCATTTGGTTAGGAGAG----------- | 18 | 1 | |
| GCCTACACTGGCAGTCGCTAG----------------------------------------- | 21 | 1 | |
| rat | GCCTACACTGGCAGTCGCTAGcaaagtggtgttCCCATTTGGTTAGGAGAGttggtgctggc | ||
| ************************************************************** | |||
| rat | (((..(((..((..((.(((((.((((((.....)))))).)))))))..))..)))..))) | 1.000 -26.40 |
| rat | chromosome:4:163737244:163737305:1 | intergenic |
sblock9071 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.50 | 19/20/0.62 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 3 4 | 0 0 0 | 1 2 1 | 0 0 0 | 15 15 3 | 4 -1 10 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.15 0.21 0.10 | 1 4 2 | 8 | 2 | 3 | 4 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------GCUGAAA--------------- | 4 | novel | |
| seed | -------------------------------------------CCCAAAG-------------------------- | 3 | novel | |
| seed | ----------------GCACAUG----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------------TGCTGAAATCAGTGTGGATG--- | 20 | - | 4 | |
| ------------------------------------------TCCCAAAGTTCTGCTGAAA--------------- | 19 | 1 | 2 | |
| ---------------TGCACATGGTTTCAGCCTTC----------------------------------------- | 20 | - | 1 | |
| rat | gcctgacagtgaatctgcacatggtttcagccttctgggagtTCCCAAAGTTCTGCTGAAATCAGTGTGGATGgca | |||
| **************************************************************************** | ||||
| rat | (((.........(((..(((.(((((((((((((.((((....)))))))....)))))))))))))..)))))). | 0.990 -32.10 | ||
| rat | chromosome:4:164250291:164250366:1 | intergenic |
sblock9099 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.32/0.36 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 5 | -2 6 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.27 | 3 3 | 2 | 1 | 8 | 11 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------GCCUGAA------------------- | 1 | novel |
| seed | -----------------AUUUCUU------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------TGCCTGAAATTTTAAAGCCACT----- | 22 | 1 | |
| ----------------TATTTCTTATAGGCTGAAG------------------------------------- | 19 | 1 | |
| rat | gttttggggctaatgaTATTTCTTATAGGCTGAAGggccttagccTGCCTGAAATTTTAAAGCCACTatgat | ||
| ************************************************************************ | |||
| rat | (((.(((((((..(((.(((((...((((((((......))))))))...))))).))).)))).))).))) | 1.000 -21.40 |
| rat | chromosome:4:164261260:164261331:1 | intergenic |
sblock9592 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.70 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 19 25 | 3 -2 | 5arm 3arm_loop | 1 1 | nd nd | 0.05 0.15 | 1 1 | 2 | 2 | -5 | -6 |
| reads | miRBase family seed | |||
| seed | --------------------UGCGACA-------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------GGCCCUU------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S2 | |||
| -------------------ATGCGACAGGTGCTGCAAG--------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------CGGCCCTTGCTGGACACCTG------------------------- | 20 | 1 | - | |
| rat | gggccgggggacctggtcgATGCGACAGGTGCTGCAAGggtcccCGGCCCTTGCTGGACACCTGcgggccatcactctgccccggcccg | |||
| ***************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000025000 ENSRNOG00000018608 LOC690574 | |||
| rat | (((((((((.....(((.((((((.((((((((((((((((.....)))))))).)).))))))))...)))))))...))))))))). | 0.980 -55.10 | ||
| rat | chromosome:5:158424831:158424919:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000025000|ENSRNOG00000018608 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000025173|ENSRNOG00000018608 ## ENSRNOG00000018608|protein_coding|LOC690574|Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial precursor (EC 1.5.1.12) (P5C dehydrogenase) (Aldehyde dehydrogenase family 4 member A1). [Source:UniProtKB/Swiss-Prot;Acc:P0C2X9] |
sblock9819 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.59/0.68 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 18 15 | -3 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.26 | 4 3 | 2 | 2 | 5 | 3 |
| reads | miRBase family seed | |||
| seed | -------------------GAUGGCA---------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------CACUGGG-------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| --------------------------------------------------TCACTGGGCTGCCTCTGCC--------------- | 19 | 1 | - | |
| ------------------AGATGGCAGCCTGGTGACACAC-------------------------------------------- | 22 | - | 1 | |
| rat | agggacacctctgtatacAGATGGCAGCCTGGTGACACACtttaggattgTCACTGGGCTGCCTCTGCCtttaaaggttatccc | |||
| ************************************************************************************ | ||||
| rat | .((((.((((.((....((((.(((((((..((((((...........))))))..)))))))))))....)).))))..)))) | 0.990 -41.10 | ||
| rat | chromosome:5:148306514:148306597:1 | intergenic |
sblock9891 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.55/0.68 | 18/25/0.40 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 1 1 1 1 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 7 36 47 17 4 | 19 -8 -17 -1 19 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.41 0.40 0.39 0.32 0.28 | 5 4 4 2 2 | 5 | 4 | -20 | -17 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------CUUCCUG-------------------------------------- | 1 | novel | |||
| seed | -------------------------------------AAUCACA------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------CUGCAGU---------------------------------- | 1 | miR-17/20b | |||
| seed | ------------------------------------------------------------------------UGUCUCU-------------- | 1 | novel | |||
| seed | --------CCUUUGG------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S1 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------CTGTCTCTAGCCCTGGAA---- | 18 | - | - | - | 1 | |
| -------GCCTTTGGGCTGGGCTCTTCAG---------------------------------------------------------------- | 22 | - | - | 1 | - | |
| ---------------------------------------------------CCTGCAGTGTCTCCGCTGCCCTGTC----------------- | 25 | - | 1 | - | - | |
| ------------------------------------GAATCACAGCAGCTTCCTGC------------------------------------- | 20 | - | - | 1 | - | |
| -----------------------------------------------GCTTCCTGCAGTGTCTCC---------------------------- | 18 | 1 | - | - | - | |
| rat | cgcctgcGCCTTTGGGCTGGGCTCTTCAGcgccttgGAATCACAGCAGCTTCCTGCAGTGTCTCCGCTGCCCTGTCTCTAGCCCTGGAAaggc | |||||
| ********************************************************************************************* | ||||||
| rat | .((((...((...((((((((.....(((.((..((((..(((.((((....)))).)))..))))..)).)))..)))))))).))..)))) | 1.000 -40.60 | ||||
| rat | chromosome:5:168201406:168201498:1 | intergenic |
novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH (65 loci)
block137495 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.45/0.52 | 18/21/0.67 | 3.0 | 2.7 | 3 | 0 | 3 | 0 | 8 | 14 | 5arm | 11 | nd | 0.35 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------ACAACCA---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------UUCCUCA---------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------CUCACAA------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S2 | |||
| --------CTTCCTCACAACCAAAACAG---------------------------------------------------------------------------- | 20 | - | 1 | - | |
| -----------CCTCACAACCAAAACAGTCCC------------------------------------------------------------------------ | 21 | - | - | 1 | |
| --------------CACAACCAAAACAGTCCC------------------------------------------------------------------------ | 18 | 1 | - | - | |
| rat | atgactacCTTCCTCACAACCAAAACAGTCCCgctggccctctgccctggacctttggcattctggactagttctgttctctcttgtggccaagtgtaactcgt | ||||
| ******************************************************************************************************** | |||||
| rat | ((((.((((((..((((((....(((((....(((((.((..((((..........))))....)).))))).))))).....))))))..))).)))..)))) | 0.960 -23.70 | |||
| rat | chromosome:11:81021840:81021943:-1 | intergenic |
block181620 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.45/0.52 | 18/21/0.67 | 3.0 | 2.7 | 3 | 0 | 3 | 0 | 8 | 14 | 5arm | 11 | nd | 0.35 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------ACAACCA---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------UUCCUCA---------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------CUCACAA------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S2 | |||
| --------CTTCCTCACAACCAAAACAG---------------------------------------------------------------------------- | 20 | - | 1 | - | |
| -----------CCTCACAACCAAAACAGTCCC------------------------------------------------------------------------ | 21 | - | - | 1 | |
| --------------CACAACCAAAACAGTCCC------------------------------------------------------------------------ | 18 | 1 | - | - | |
| rat | atgactacCTTCCTCACAACCAAAACAGTCCCgctggccctctgccctggacctttggcattctggactagttctgttctctcttgtggccaagtgtaactcgt | ||||
| ******************************************************************************************************** | |||||
| rat | ((((.((((((..((((((....(((((....(((((.((..((((..........))))....)).))))).))))).....))))))..))).)))..)))) | 0.960 -23.70 | |||
| rat | chromosome:12:9847782:9847885:-1 | intergenic |
block182386 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.242 | no | no | 0.45/0.52 | 18/21/0.67 | 3.0 | 2.7 | 3 | 0 | 3 | 0 | 8 | 14 | 5arm | 11 | nd | 0.35 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------ACAACCA---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------UUCCUCA---------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------CUCACAA------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S2 | |||
| --------CTTCCTCACAACCAAAACAG---------------------------------------------------------------------------- | 20 | - | 1 | - | |
| -----------CCTCACAACCAAAACAGTCCC------------------------------------------------------------------------ | 21 | - | - | 1 | |
| --------------CACAACCAAAACAGTCCC------------------------------------------------------------------------ | 18 | 1 | - | - | |
| rat | atgactacCTTCCTCACAACCAAAACAGTCCCgctggccctctgccctggacctttggcattctggactagtcctgttctctcttgtggccaagtgtaactcgt | ||||
| ******************************************************************************************************** | |||||
| rat | ((((.((((((..((((((....(((((....(((((.((..((((..........))))....)).))))).))))).....))))))..))).)))..)))) | 0.670 -23.00 | |||
| rat | chromosome:12:10844648:10844751:-1 | intergenic |
block425172 [novel_lenNOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.217 | no | no | 0.45/0.52 | 18/21/0.67 | 3.0 | 2.7 | 3 | 0 | 3 | 0 | 8 | 14 | 5arm | 11 | nd | 0.35 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------UUCCUCA--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------ACAACCA--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------CUCACAA------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S2 | |||
| -----------CCTCACAACCAAAACAGTCCC----------------------------------------------------------------------- | 21 | - | - | 1 | |
| --------CTTCCTCACAACCAAAACAG--------------------------------------------------------------------------- | 20 | - | 1 | - | |
| --------------CACAACCAAAACAGTCCC----------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | atgactacCTTCCTCACAACCAAAACAGTCCCgctggccctctgccctggacctttggcattctggactagttctgttctcttgtggccaagtgtaactcgtg | ||||
| ******************************************************************************************************* | |||||
| rat | ((((.((((((..((((((....(((((....(((((.((..((((..........))))....)).))))).)))))...))))))..))).)))..)))). | 0.970 -24.60 | |||
| rat | chromosome:14:112193731:112193833:1 | intergenic |
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