other hairpins
novel_lenNOK_gcHIGH_nonpairedHIGH (63 loci)
block2455778 [novel_lenNOK_gcHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.067 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 13 | 3arm | 1 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------GGAGCGG------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| --------------------------------------------------------------GGGAGCGGCCGCGGGGGC-------------------- | 18 | 1 | |
| rat | ccgctcggcccaggctctagtgccgcggcgaggcgcggggccgtgaggggcgggcctgggagGGGAGCGGCCGCGGGGGCggggccggggcggggccgga | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013050 ENSRNOG00000009729 Ubp1_predicted | ||
| rat | ((((((.((((.((((((.((.(((((((...((.((((.((((.....)))).))))........)).))))).)).)))))))).)))).)))).)). | 0.630 -57.10 |
| rat | chromosome:8:118573710:118573809:1 | Same_strand|Intronic_non-coding|ENSRNOT00000013050|ENSRNOG00000009729 ## Same_strand|Boundary_non-coding|ENSRNOT00000037458|ENSRNOG00000009729 ## ENSRNOG00000009729|protein_coding|Ubp1_predicted| ## {Repeats: G-rich 2 19 1 class=Low_complexity,dust 118573763 118573781 0 class=dust,G-rich 2 57 1 class=Low_complexity} ## {SimpF: 1 Eponine,oe = 0.88 0 CpG} |
block2493070 [novel_lenNOK_gcHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.030 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 9 | 3arm | 3 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CCCGCCC------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------------------------------------------------------CCCCGCCCCCCCCCCAGG-------------------- | 18 | 1 | |
| rat | tggcttccaggaaggagccttgggggtcaggctacagcctcaccacaggggtgtggctCCCCGCCCCCCCCCCAGGccccaggcttccacagggct | ||
| ************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000022314 ENSRNOG00000016637 AC084391.3 | ||
| rat | .(((((...((((((.((((.(((((...(((...((((.((((.....)))).))))....)))..))))).)))).))....))))...))))) | 0.470 -45.00 |
| rat | chromosome:9:35521578:35521673:-1 | Same_strand|Intronic_coding|ENSRNOT00000022314|ENSRNOG00000016637 ## ENSRNOG00000016637|protein_coding|AC084391.3|YB012_MOUSE Isoform 4 of Q24JP3 - Mus musculus (Mouse) [Source:UniprotKB/SpliceVariant;Acc:Q24JP3-4] ## {Repeats: dust 35521601 35521615 0 class=dust} |
block3005976 [novel_lenNOK_gcHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.561 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 24 | 4 | 5arm | 3 | nd | 0.44 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------GGGGCGG-------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ------------------------CGGGGCGGGGGCAGGGGG---------------------------------------------------- | 18 | 1 | |
| rat | tgacaagacatgttgctgtggtgcCGGGGCGGGGGCAGGGGGcggatttttttctgttcttccaatgttctttatttactgccatgagatctca | ||
| ********************************************************************************************** | |||
| rat | ........((((..((.((((....((..((..((..(((..((((......))))..)))))..))..))....)))).))))))........ | 0.880 -24.70 |
| rat | chromosome:X:80433483:80433576:1 | intergenic |
block274706 [novel_lenNOK_gcHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.081 | no | no | 0.95/0.95 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 37 | 10 | 5arm | 1 | nd | 0.32 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------UCCCCCG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------------------------------GTCCCCCGCCCCGGCCCGC---------------------------------------------------------------- | 19 | 1 | |
| rat | gttccagcctagaaattctaaggtgtcacatgacagcGTCCCCCGCCCCGGCCCGCtccgccgcccaaagggagggttacgcgggggcggggcgttgggtcacttccgtccaggccggaa | ||
| ************************************************************************************************************************ | |||
| rat | .((((.((((.((.......(((((..((....(((((..(((((((((.((..((.((....(((...))).))))...)).)))))))))))))).)))))))...)).)))).)))) | 0.620 -53.30 |
| rat | chromosome:13:87035240:87035359:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (62 loci)
block14857 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.416 | no | no | 0.45/0.53 | 18/25/0.54 | 0.0 3.0 1.9 | 0.0 2.0 3.1 | 1 3 9 | 0 0 0 | 1 3 2 | 0 0 0 | 10 17 6 | 0 -12 -18 | 5arm 5arm_loop_3arm 3arm | 1 1 3 | nd nd nd | 0.64 0.45 0.56 | 7 4 3 | 13 | 4 | 0 | 1 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------AACAGAA------------------------ | 3 | novel | |||
| seed | -----------------------------------ACAGAAC----------------------- | 2 | novel | |||
| seed | ---------------------------------GAACAGA------------------------- | 1 | novel | |||
| seed | --------------------------------GGAACAG-------------------------- | 1 | novel | |||
| seed | ---------------------------------------AACCUAA------------------- | 1 | novel | |||
| seed | -----------UAAGCCA----------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------CCUAAAG----------------- | 1 | novel | |||
| seed | ----------------------CAGAGAU------------------------------------ | 1 | novel | |||
| seed | ------------------GUCACAG---------------------------------------- | 1 | novel | |||
| seed | -----------------------AGAGAUC----------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T3S2 | T4S1 | |||
| ---------------------------------GAACAGAACCTAAAGCCTAC------------ | 20 | - | 3 | - | - | |
| ----------------------------------AACAGAACCTAAAGCCTACCCTCAC------ | 25 | - | 1 | 1 | - | |
| --------------------------------GGAACAGAACCTAAAGCC--------------- | 18 | - | 1 | - | - | |
| -----------------AGTCACAGAGATCTGGGAACAGA------------------------- | 23 | - | - | - | 1 | |
| ----------GTAAGCCAGTCACAGAGATCTG--------------------------------- | 22 | 1 | - | - | - | |
| ----------------------------------------ACCTAAAGCCTACCCTCAC------ | 19 | - | 1 | - | - | |
| ---------------------ACAGAGATCTGGGAACAGAACCT--------------------- | 23 | 1 | - | - | - | |
| --------------------------------------GAACCTAAAGCCTACCCTC-------- | 19 | - | - | 1 | - | |
| ----------------------CAGAGATCTGGGAACAGAAC----------------------- | 20 | - | 1 | - | - | |
| -------------------------------GGGAACAGAACCTAAAGCC--------------- | 19 | - | 1 | - | - | |
| rat | agctgattgtGTAAGCCAGTCACAGAGATCTGGGAACAGAACCTAAAGCCTACCCTCACtgcagt | |||||
| ***************************************************************** | ||||||
| rat | .((((...(((.......((...((...((((....))))..))...)).......)))..)))) | 0.460 -11.24 | ||||
| rat | chromosome:10:34175695:34175759:-1 | intergenic |
block683896 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.782 | no | no | 0.36/0.63 | 19/25/0.50 | 3.3 2.3 | 3.9 3.3 | 7 3 | 0 0 | 5 2 | 0 0 | 26 23 | -12 -23 | 5arm_loop 3arm_loop | 9 9 | nd nd | 0.37 0.50 | 4 6 | 10 | 6 | 0 | -27 |
| reads | miRBase family seed | |||||||
| seed | ---------------------------ACUAUCA------------------------------------------------------------ | 4 | novel | |||||
| seed | --------------------------------------------AGGACAC------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------UUGAUGC----------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------GGACACA------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------AUGCCCC-------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------AUUGAUG------------------------------------------------------ | 1 | novel | |||||
| seed | --------------------------------------------------CAGAGAC------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | |||
| --------------------------GACTATCATTGATGCCCCAGGAC--------------------------------------------- | 23 | - | - | 1 | 2 | - | - | |
| -------------------------------------------CAGGACACAGAGACTTCATCAA----------------------------- | 22 | 1 | - | - | - | - | - | |
| --------------------------------CATTGATGCCCCAGGACACAGAGAC------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -------------------------------------------------ACAGAGACTTCATCAAGAACAT----------------------- | 22 | 1 | - | - | - | - | - | |
| --------------------------------------------AGGACACAGAGACTTCATCAAGAAC------------------------- | 25 | - | 1 | - | - | - | - | |
| ------------------------------------GATGCCCCAGGACACAGAG--------------------------------------- | 19 | - | 1 | - | - | - | - | |
| --------------------------GACTATCATTGATGCCCCA------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ---------------------------------ATTGATGCCCCAGGACACAGAGACT------------------------------------ | 25 | - | - | - | - | - | 1 | |
| rat | agatttgagaccagcaaatactatgtGACTATCATTGATGCCCCAGGACACAGAGACTTCATCAAGAACATgattacaggcacatctcaggctg | |||||||
| ********************************************************************************************** | ||||||||
| rat | ((.(((((((...((........(((((.(((..((((((....((..........)).))))))....))).))))).))...))))))))). | 0.660 -14.20 | ||||||
| rat | chromosome:18:948316:948409:-1 | intergenic |
block770080 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.915 | no | no | 0.32/0.53 | 19/25/0.51 | 3.0 0.0 0.0 | 4.5 0.0 0.0 | 22 1 3 | 0 0 0 | 3 1 1 | 0 0 0 | 26 43 28 | -6 -15 -3 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.40 0.47 0.42 | 5 5 4 | 39 | 3 | 0 | 3 |
| reads | miRBase family seed | ||||
| seed | ---------------------------AAGCUAA-------------------------------------------------------------- | 15 | novel | ||
| seed | --------------------------------AAUCACU--------------------------------------------------------- | 10 | novel | ||
| seed | --------------------------------------------------GAGGCCU--------------------------------------- | 3 | novel | ||
| seed | -----------------------------GCUAAUC------------------------------------------------------------ | 3 | novel | ||
| seed | -------------------------------------CUCUCAU---------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------AUCACUC-------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------ACUCUCA----------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------GUUUAUG--------------------------------------------- | 1 | novel | ||
| seed | -----------------------CCCUAAG------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------CACUCUC------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------------------TAATCACTCTCATGTTTATGAG------------------------------------------- | 22 | - | 1 | 9 | |
| --------------------------TAAGCTAATCACTCTCATG--------------------------------------------------- | 19 | 1 | - | 7 | |
| --------------------------TAAGCTAATCACTCTCATGT-------------------------------------------------- | 20 | - | 1 | 6 | |
| -------------------------------------------------TGAGGCCTTGAGTTCCTTG---------------------------- | 19 | - | - | 3 | |
| --------------------------------AATCACTCTCATGTTTATGAG------------------------------------------- | 21 | - | - | 2 | |
| ------------------------------------ACTCTCATGTTTATGAGGC----------------------------------------- | 19 | - | - | 2 | |
| ----------------------------AGCTAATCACTCTCATGTT------------------------------------------------- | 19 | - | - | 2 | |
| ----------------------------AGCTAATCACTCTCATGTTTAT---------------------------------------------- | 22 | - | - | 1 | |
| -------------------------------------------TGTTTATGAGGCCTTGAGT---------------------------------- | 19 | - | - | 1 | |
| ----------------------TCCCTAAGCTAATCACTCTCATGTT------------------------------------------------- | 25 | - | - | 1 | |
| ----------------------------------TCACTCTCATGTTTATGAG------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------CACTCTCATGTTTATGAGG------------------------------------------ | 19 | - | - | 1 | |
| rat | ccacgactgtgggtcttgcccctcccTAAGCTAATCACTCTCATGTTTATGAGGCCTTGAGTTCCTTGgcaaatgaagatggcacacacacactgg | ||||
| ************************************************************************************************ | |||||
| rat | (((....((((.((..((((.((......(((((.....((((.(((.....)))..))))....)))))......))..)))).)).)))).))) | 0.600 -17.50 | |||
| rat | chromosome:19:15929616:15929711:-1 | intergenic |
block1060954 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.33/0.58 | 18/26/0.45 | 0.6 0.3 1.0 3.5 0.0 | 1.4 0.7 1.3 1.0 0.0 | 5 3 6 2 1 | 0 0 0 0 0 | 3 1 3 1 1 | 0 0 0 0 0 | 19 33 43 36 30 | 10 0 -9 -24 9 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.43 0.67 0.37 0.62 0.63 | 5 13 4 13 9 | 20 | 3 | 1 | 0 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------GAUAUUU------------------------------------------------------------------- | 5 | novel | ||
| seed | -----------------------CCUUCCU---------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------AUUUUCA---------------------------------------------------------------- | 4 | novel | ||
| seed | ----------------------------------GGGGCAC----------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------GGGCACC---------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------UCUCCUU------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------GAAAUCU------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------GGCAACG-------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------GCAACUC----------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| ----------------------------------------------TATTTTCATGGCAACGGAA----------------------------------------------------- | 19 | - | - | 4 | |
| -------------------------------------------TGATATTTTCATGGCAACGGAAA---------------------------------------------------- | 23 | 1 | 1 | 1 | |
| -------------------------------------------TGATATTTTCATGGCAAC--------------------------------------------------------- | 18 | - | - | 2 | |
| ----------------------TCCTTCCTTTCTGGGGCA------------------------------------------------------------------------------ | 18 | - | - | 2 | |
| ---------------------------------TGGGGCACCCTGATATTTTCA---------------------------------------------------------------- | 21 | - | - | 2 | |
| ----------------------TCCTTCCTTTCTGGGGCAC----------------------------------------------------------------------------- | 19 | 1 | - | - | |
| -------------------TTCTCCTTCCTTTCTGGGGCA------------------------------------------------------------------------------ | 21 | - | 1 | - | |
| ----------------------------------GGGGCACCCTGATATTTTCATG-------------------------------------------------------------- | 22 | - | - | 1 | |
| ------------------------------------------------------TGGCAACGGAAATCTTGCAACTCAAC-------------------------------------- | 26 | - | - | 1 | |
| -------------------------------------------------------------GGAAATCTTGCAACTCAACCA------------------------------------ | 21 | - | - | 1 | |
| ----------------------TCCTTCCTTTCTGGGGCACCCTGA------------------------------------------------------------------------ | 24 | - | 1 | - | |
| ---------------------------------------------------------------------TGCAACTCAACCAGTAGGT------------------------------ | 19 | - | - | 1 | |
| rat | gctgcactgctcccccagcttcTCCTTCCTTTCTGGGGCACCCTGATATTTTCATGGCAACGGAAatcttgcaactcaaccagtaggttggaggtggcgtgggggagaagggctcagt | ||||
| ********************************************************************************************************************** | |||||
| rat | ((((..((.((((((((((((((((..(((..((((.............((((.((....)))))).............)))).)))..))))).))).)))))))).))....)))) | 0.720 -45.97 | |||
| rat | chromosome:20:5522698:5522815:-1 | intergenic |
block1307653 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.377 | no | no | 0.44/0.58 | 18/23/0.54 | 1.5 0.0 3.7 0.0 | 1.0 0.0 2.2 0.0 | 2 1 9 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 17 23 31 17 | 4 -2 -17 -9 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 1 | 43 40 25 19 | 0.56 0.48 0.61 0.50 | 5 4 11 8 | 13 | 2 | 0 | 5 |
| reads | miRBase family seed | |||
| seed | --------------------------------GGGAUCA-------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------GCUGAUA------------------------------------- | 2 | novel | |
| seed | -------------------------------------CAGCUGA--------------------------------------- | 2 | novel | |
| seed | ------------------------AGACGUC---------------------------------------------------- | 1 | novel | |
| seed | ------------------GCAGAAA---------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------AUCAGCU----------------------------------------- | 1 | novel | |
| seed | --------------------------------------AGCUGAU-------------------------------------- | 1 | novel | |
| seed | ---------------------GAAAGAC------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------AGACAUG------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| --------------------------------------AGCTGATAGACATGAAGC--------------------------- | 18 | 2 | - | |
| -------------------------------CGGGATCAGCTGATAGACATGAA----------------------------- | 23 | 2 | - | |
| ------------------------------------TCAGCTGATAGACATGAAGC--------------------------- | 20 | 1 | - | |
| ----------------------------------GATCAGCTGATAGACATGAAGC--------------------------- | 22 | - | 1 | |
| ------------------------------------TCAGCTGATAGACATGAAGCGCC------------------------ | 23 | 1 | - | |
| -------------------------------CGGGATCAGCTGATAGAC---------------------------------- | 18 | - | 1 | |
| -----------------TGCAGAAAGACGTCCGGGA----------------------------------------------- | 19 | 1 | - | |
| --------------------------------------------TAGACATGAAGCGCCTGGAGGT----------------- | 22 | 1 | - | |
| -----------------------AAGACGTCCGGGATCAGCTGA--------------------------------------- | 21 | 1 | - | |
| --------------------AGAAAGACGTCCGGGATC--------------------------------------------- | 18 | 1 | - | |
| -------------------------------------CAGCTGATAGACATGAAGC--------------------------- | 19 | 1 | - | |
| rat | gcaacagattcaggttcTGCAGAAAGACGTCCGGGATCAGCTGATAGACATGAAGCGCCTGGAGGTaagcctgaggcccgggc | |||
| *********************************************************************************** | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++ | ENSRNOT00000012192 ENSRNOG00000024848 Fga | |||
| rat | ((......((((((((..........((.((((((....(((...........))).)))))).)).))))))))......)) | 0.520 -24.80 | ||
| rat | chromosome:2:174750394:174750476:1 | Same_strand|Boundary_coding|ENSRNOT00000012192|ENSRNOG00000024848 ## ENSRNOG00000024848|protein_coding|Fga|Fibrinogen alpha chain precursor [Contains: Fibrinopeptide A]. [Source:UniProtKB/Swiss-Prot;Acc:P06399] |
block1469684 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.052 | no | no | 0.42/0.55 | 19/26/0.65 | 1.5 3.8 | 1.8 5.7 | 13 13 | 0 0 | 1 5 | 0 0 | 7 16 | -5 -22 | 5arm_loop 3arm_loop | 1 2 | nd nd | 0.38 0.42 | 6 3 | 31 | 5 | 0 | -24 |
| reads | miRBase family seed | ||||||
| seed | --------GCCUAGG-------------------------------------------------------- | 8 | novel | ||||
| seed | ------------------------CCACAUC---------------------------------------- | 7 | novel | ||||
| seed | ------------AGGAAGC---------------------------------------------------- | 5 | novel | ||||
| seed | ---------------------------------GCCUACC------------------------------- | 4 | novel | ||||
| seed | -------------GGAAGCC--------------------------------------------------- | 1 | novel | ||||
| seed | ----------------AGCCUUU------------------------------------------------ | 1 | novel | ||||
| seed | -----UCUGCCU----------------------------------------------------------- | 1 | novel | ||||
| seed | --ACUUCUG-------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------UCCACAU----------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------ACCUGGA--------------------------- | 1 | novel | ||||
| seed | ------CUGCCUA---------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| -----------TAGGAAGCCTTTTCCACATCT--------------------------------------- | 21 | - | - | - | - | 5 | |
| -------TGCCTAGGAAGCCTTTTCCACA------------------------------------------ | 22 | - | - | - | - | 5 | |
| -----------------------TCCACATCTTGCCTACCTG----------------------------- | 19 | - | 1 | 1 | - | 2 | |
| -------TGCCTAGGAAGCCTTTTCCACATCT--------------------------------------- | 25 | - | - | - | - | 3 | |
| -----------------------TCCACATCTTGCCTACCTGGA--------------------------- | 21 | - | - | - | - | 2 | |
| --------------------------------TGCCTACCTGGAAAAGTACTGTG---------------- | 23 | - | - | - | 1 | 1 | |
| ------------------------------------TACCTGGAAAAGTACTGTG---------------- | 19 | - | - | - | - | 1 | |
| -----------------------TCCACATCTTGCCTACCTGGAAAAGT---------------------- | 26 | 1 | - | - | - | - | |
| -----TCTGCCTAGGAAGCCTTTTCCACA------------------------------------------ | 24 | - | - | - | - | 1 | |
| ----TTCTGCCTAGGAAGCCTTT------------------------------------------------ | 19 | - | - | - | - | 1 | |
| -GACTTCTGCCTAGGAAGCCT-------------------------------------------------- | 20 | - | - | - | - | 1 | |
| ----------------------TTCCACATCTTGCCTACCTGGA--------------------------- | 22 | - | 1 | - | - | - | |
| --------------------------------TGCCTACCTGGAAAAGTACT------------------- | 20 | - | - | - | - | 1 | |
| ---------------AAGCCTTTTCCACATCTTG------------------------------------- | 19 | - | - | - | - | 1 | |
| --------------------------------TGCCTACCTGGAAAAGTACTGT----------------- | 22 | - | - | - | - | 1 | |
| ------------AGGAAGCCTTTTCCACATCT--------------------------------------- | 20 | - | - | - | - | 1 | |
| rat | ggacttcTGCCTAGGAAGCCTTTTCCACATCTTGCCTACCTGGAaaagtactgtgcctccctccaggtcct | ||||||
| *********************************************************************** | |||||||
| rat | ((((((......(((.((.((((((((.............))))))))..))...)))......)))))). | 0.940 -17.52 | |||||
| rat | chromosome:3:76949625:76949695:1 | intergenic |
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