other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (62 loci)
sblock8461 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.764 | no | no | 0.42/0.53 | 18/26/0.45 | 2.0 0.0 0.7 | 2.0 2.4 0.7 | 3 5 3 | 0 0 0 | 1 3 3 | 0 0 0 | 10 13 4 | 9 -6 7 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.44 0.38 0.42 | 4 5 4 | 11 | 5 | 0 | -9 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------CCCACUA------------------------------- | 5 | novel | ||||
| seed | ---------------------------------------------------------------CUUCAGC----------------- | 2 | novel | ||||
| seed | --------------AGACAUG------------------------------------------------------------------ | 2 | novel | ||||
| seed | --------------------------------------------------------------UCUUCAG------------------ | 1 | novel | ||||
| seed | -----------ACUAGAC--------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------------TCCCACTATCTTCTTCTTCAGCCACA------------- | 26 | - | - | 1 | - | 2 | |
| -------------------------------------------------------------TTCTTCAGCCACATAGCCTCC----- | 21 | - | - | - | 1 | - | |
| ------------------------------------------------TCCCACTATCTTCTTCTTCAG------------------ | 21 | - | - | - | - | 1 | |
| ------------------------------------------------TCCCACTATCTTCTTCTTC-------------------- | 19 | - | 1 | - | - | - | |
| --------------------------------------------------------------TCTTCAGCCACATAGCCTCCT---- | 21 | 1 | - | - | - | - | |
| ----------TACTAGACATGGCGGAAACT--------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------TAGACATGGCGGAAACTAGACA---------------------------------------------------- | 22 | - | - | - | - | 1 | |
| -------------TAGACATGGCGGAAACTA-------------------------------------------------------- | 18 | - | - | - | - | 1 | |
| --------------------------------------------------------------TCTTCAGCCACATAGCCTC------ | 19 | - | - | - | - | 1 | |
| rat | gactgtagaaTACTAGACATGGCGGAAACTAGACAtgacagataccttTCCCACTATCTTCTTCTTCAGCCACATAGCCTCCTtgtc | ||||||
| *************************************************************************************** | |||||||
| rat | (((...((....(((....((((.(((...(((......(((((..........))))))))..))).))))..)))....)).))) | 0.850 -10.90 | |||||
| rat | chromosome:4:116141400:116141486:-1 | intergenic |
sblock8488 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.654 | no | no | 0.37/0.57 | 19/26/0.55 | 0.0 5.8 0.9 | 0.0 7.1 1.0 | 4 14 12 | 0 0 0 | 1 3 4 | 0 0 0 | 11 13 0 | -5 -19 10 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.43 0.45 0.37 | 4 5 4 | 33 | 5 | 7 | 11 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------CUUUUCU---------------- | 8 | novel | ||||
| seed | ------------AGGAAGA-------------------------------------------------- | 6 | novel | ||||
| seed | ------------------------GAAGCUU-------------------------------------- | 4 | novel | ||||
| seed | ---------------------GCUGAAG----------------------------------------- | 3 | novel | ||||
| seed | ------------------------------------GACCUGC-------------------------- | 3 | novel | ||||
| seed | ------------------------------------------------UUUCUCC-------------- | 2 | novel | ||||
| seed | -------------------------------GAGCUGA------------------------------- | 2 | novel | ||||
| seed | ---------------------------------GCUGACC----------------------------- | 1 | miR-345 | ||||
| seed | --------------------------------------------GCCUUUU------------------ | 1 | novel | ||||
| seed | ---------------------------------------------------CUCCAUA----------- | 1 | novel | ||||
| seed | -------------------------------------ACCUGCU------------------------- | 1 | novel | ||||
| seed | --------------GAAGAAU------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T5S1 | |||
| ---------------------------------------------CCTTTTCTCCATAAAGTCC----- | 19 | - | - | 1 | 1 | 2 | |
| -----------TAGGAAGAATGCTGAAGCTTGAG----------------------------------- | 23 | - | - | - | - | 4 | |
| ---------------------------------------------CCTTTTCTCCATAAAGTCCTG--- | 21 | - | - | - | - | 3 | |
| -----------------------------------TGACCTGCTGCCTTTTCTC--------------- | 19 | 1 | - | - | - | 2 | |
| -----------------------TGAAGCTTGAGCTGACCTGC-------------------------- | 20 | - | 1 | - | - | 1 | |
| -----------------------------------------------TTTTCTCCATAAAGTCCTG--- | 19 | - | - | - | - | 2 | |
| ------------------------------TGAGCTGACCTGCTGCCTTTTCTCCA------------- | 26 | - | - | - | - | 2 | |
| --------------------TGCTGAAGCTTGAGCTGACCTG--------------------------- | 22 | - | 1 | - | - | 1 | |
| --------------------TGCTGAAGCTTGAGCTGACCTGC-------------------------- | 23 | - | - | - | - | 1 | |
| ------------------------------------GACCTGCTGCCTTTTCTCCA------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------CCTTTTCTCCATAAAGTCCT---- | 20 | - | 1 | - | - | - | |
| --------------------------------------------------TCTCCATAAAGTCCTGCCT | 19 | - | - | - | - | 1 | |
| -----------------------TGAAGCTTGAGCTGACCTGCTGCCT--------------------- | 25 | - | - | - | - | 1 | |
| -----------TAGGAAGAATGCTGAAGCT--------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------TGAAGCTTGAGCTGACCTG--------------------------- | 19 | - | - | - | - | 1 | |
| -------------GGAAGAATGCTGAAGCTTGAGC---------------------------------- | 22 | - | - | - | - | 1 | |
| -----------TAGGAAGAATGCTGAAGCTTGA------------------------------------ | 22 | - | - | - | - | 1 | |
| -------------------------------------------TGCCTTTTCTCCATAAAGTCCTG--- | 23 | - | - | - | - | 1 | |
| --------------------------------AGCTGACCTGCTGCCTTTTC----------------- | 20 | 1 | - | - | - | - | |
| rat | ggtggaaagatTAGGAAGAATGCTGAAGCTTGAGCTGACCTGCTGCCTTTTCTCCATAAAGTCCTGcct | ||||||
| ********************************************************************* | |||||||
| ------------------------------------------------------------------------<<<<<<< | ENSRNOT00000057552 ENSRNOG00000037879 | ||||||
| rat | ((((((...((..((((((..((...(((....))).....))....))))))..))....))).))). | 0.700 -14.30 | |||||
| rat | chromosome:4:119284000:119284068:-1 | Opposite_strand|Boundary_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
sblock906 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.464 | no | no | 0.56/0.67 | 18/22/0.36 | 2.1 0.7 0.0 | 1.3 1.0 0.0 | 7 3 1 | 0 0 0 | 5 2 1 | 0 0 0 | 30 41 11 | -9 -18 20 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 2 | nd nd nd | 0.39 0.50 0.33 | 5 6 4 | 11 | 5 | 0 | -15 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------CUCCGGU----------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------GGCUCCG------------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------AGGUAUG------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------GCUCCGG------------------------------------------------------------ | 1 | novel | ||||
| seed | ------------------------------------CCGGUAC--------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------------GGAGGGA--------------------- | 1 | novel | ||||
| seed | -------------------------------CGGCUCC-------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------CCAGGUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------CAGGTATGTGGGACCCTTGG------------------------------------- | 20 | - | 2 | - | - | - | |
| -----------------------------------TCCGGTACCAGGTATGTG----------------------------------------------- | 18 | 1 | - | - | - | - | |
| ---------------------------------GCTCCGGTACCAGGTATG------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ---------------------------------GCTCCGGTACCAGGTATGT------------------------------------------------ | 19 | - | - | 1 | - | - | |
| -----------------------------------------ACCAGGTATGTGGGACCCT---------------------------------------- | 19 | 1 | - | - | - | - | |
| -----------------------------------------------------------------------GGGAGGGAGGTGAGATAG----------- | 18 | - | - | - | 1 | - | |
| -------------------------------CGGCTCCGGTACCAGGTA--------------------------------------------------- | 18 | - | 1 | - | - | - | |
| -------------------------------CGGCTCCGGTACCAGGTAT-------------------------------------------------- | 19 | - | 1 | - | - | - | |
| ------------------------------GCGGCTCCGGTACCAGGTATG------------------------------------------------- | 21 | 1 | - | - | - | - | |
| --------------------------------GGCTCCGGTACCAGGTATGTGG---------------------------------------------- | 22 | - | - | - | - | 1 | |
| rat | cctccttctcactgagataaaaccgtcccgGCGGCTCCGGTACCAGGTATGTGGGACCCTTGGgccacttgGGGAGGGAGGTGAGATAGtgccacagggg | ||||||
| **************************************************************************************************** | |||||||
| rat | .((((((((((((.........((.((((((.(((((.(((.(((......))).)))...))))).))..)))).)).))))))).........))))) | 0.800 -36.40 | |||||
| rat | chromosome:1:201460055:201460154:-1 | intergenic |
sblock9143 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.119 | no | no | 0.29/0.63 | 19/25/0.44 | 0.0 4.2 | 0.3 5.5 | 3 13 | 0 0 | 1 3 | 0 0 | 0 5 | 10 -18 | 5arm 3arm | 1 1 | nd nd | 0.45 0.35 | 3 5 | 16 | 3 | -14 | -5 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------UGCCAUU-------------------- | 4 | novel | ||
| seed | -GGAAUGC------------------------------------------------------ | 3 | novel | ||
| seed | ------------------------------------GCCAUUG------------------- | 3 | novel | ||
| seed | -----------------------AGGUAAU-------------------------------- | 3 | novel | ||
| seed | ------------------------------CAAAUUG------------------------- | 1 | novel | ||
| seed | ---------------------------------AUUGCCA---------------------- | 1 | novel | ||
| seed | ---------------------------AAUCAAA---------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| -----------------------------------TGCCATTGTACATACCCAG-------- | 19 | 1 | 1 | 1 | |
| ----------------------------------TTGCCATTGTACATACCCAGGAT----- | 23 | - | - | 2 | |
| AGGAATGCCACGGGGAGGAT------------------------------------------ | 20 | - | - | 2 | |
| ----------------------TAGGTAATCAAATTGCCATTGTACA--------------- | 25 | 1 | - | 1 | |
| ----------------------------------TTGCCATTGTACATACCCAG-------- | 20 | - | - | 1 | |
| --------------------------------AATTGCCATTGTACATACCCAGGA------ | 24 | - | - | 1 | |
| -----------------------------TCAAATTGCCATTGTACAT-------------- | 19 | - | - | 1 | |
| ----------------------TAGGTAATCAAATTGCCAT--------------------- | 19 | - | - | 1 | |
| --------------------------TAATCAAATTGCCATTGTACA--------------- | 21 | - | - | 1 | |
| AGGAATGCCACGGGGAGGA------------------------------------------- | 19 | - | - | 1 | |
| ----------------------------------TTGCCATTGTACATACCCA--------- | 19 | - | - | 1 | |
| rat | AGGAATGCCACGGGGAGGATgtTAGGTAATCAAATTGCCATTGTACATACCCAGGATgtccc | ||||
| ************************************************************** | |||||
| rat | .(((...((...(((...((((..((((((...)))))).....)))).))).))...))). | 1.000 -16.50 | |||
| rat | chromosome:4:164281452:164281513:1 | intergenic |
sblock9404 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.083 | no | no | 0.32/0.50 | 18/23/0.31 | 0.0 0.0 0.0 0.0 2.0 | 0.0 0.0 0.0 0.0 1.5 | 6 1 1 1 2 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 11 17 25 28 32 | 13 3 0 -4 -4 | 5arm 5arm 5arm 5arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.35 0.44 0.47 0.50 | 5 7 7 5 5 | 13 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | ------------GACCAUU------------------------------------------------------------------------------------ | 6 | novel | ||
| seed | ----------CUGACCA-------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------CAUCUUG------------------------------------------- | 1 | novel | ||
| seed | ------------------UCCAAAC------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------AUCCUAU------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------GCUAUCC---------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------GACUCAU----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------TGACCATTCCAAACTGCTA------------------------------------------------------------------------- | 19 | - | - | 6 | |
| ---------CCTGACCATTCCAAACTGCT-------------------------------------------------------------------------- | 20 | 1 | - | 1 | |
| ----------------------------TATCCTATACAGTGAAGCT-------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------TGCTATCCTATACAGTGA------------------------------------------------------------ | 18 | - | - | 1 | |
| -----------------TTCCAAACTGCTATCCTATACAG--------------------------------------------------------------- | 23 | - | 1 | - | |
| ----------------------------------------------------TCATCTTGTGTATTCTTGA-------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------TGACTCATCTTGTGTATTCT----------------------------------- | 20 | - | - | 1 | |
| rat | ggcttgtgtccTGACCATTCCAAACTGCTAtcctatacagtgaagctgtgactcatcttgtgtattcttgaaggtctggactacaatgtggaggacagaggcc | ||||
| ******************************************************************************************************* | |||||
| rat | (((((.((((((..((((((((.(((.......((((((((((.........))))..))))))........))).)))).......)))))))))).))))) | 0.770 -30.67 | |||
| rat | chromosome:5:114545702:114545804:-1 | intergenic |
sblock10148 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.328 | no | no | 0.37/0.56 | 18/25/0.45 | 0.0 0.0 1.4 3.0 | 0.0 2.3 1.8 0.0 | 1 3 5 2 | 0 0 0 0 | 1 2 1 2 | 0 0 0 0 | 0 15 32 19 | 37 19 -2 8 | 5arm 5arm 5arm 3arm | 1 1 2 2 | nd nd nd nd | 0.47 0.38 0.42 0.53 | 8 5 2 4 | 11 | 2 | 9 | 7 |
| reads | miRBase family seed | |||
| seed | --------------------------------------GCCACAC--------------------------------------------------------------------- | 3 | novel | |
| seed | ----------------AGGCACU------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------------------------------GUAGGGA------------------------------ | 1 | miR-135a* | |
| seed | ---------------------------------UCUAAGC-------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------AAGCCAC----------------------------------------------------------------------- | 1 | novel | |
| seed | -CCCAUUA---------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------GAGAAUG------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------------AGCCACACAAAGAAACCTTGA-------------------------------------------------------- | 21 | - | 2 | |
| ---------------TAGGCACTTGGGCACACT--------------------------------------------------------------------------------- | 18 | - | 1 | |
| ----------------------------------------------------------------------------TGTAGGGACAGAGACAAAG------------------- | 19 | - | 1 | |
| --------------------------------TTCTAAGCCACACAAAGAA--------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------------------TAAGCCACACAAAGAAACCTTGA-------------------------------------------------------- | 23 | - | 1 | |
| TCCCATTAAGCATGGTAGG----------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| ---------------TAGGCACTTGGGCACACTTCTA----------------------------------------------------------------------------- | 22 | 1 | - | |
| ----------------------------------------------------------------------TGAGAATGTAGGGACAGAGACAAAG------------------- | 25 | 1 | - | |
| -------------------------------------AGCCACACAAAGAAACCTT---------------------------------------------------------- | 19 | - | 1 | |
| ---------------TAGGCACTTGGGCACACTTCT------------------------------------------------------------------------------ | 21 | - | 1 | |
| rat | TCCCATTAAGCATGGTAGGCACTTGGGCACACTTCTAAGCCACACAAAGAAACCTTGAtagaagggaagtTGAGAATGTAGGGACAGAGACAAAGcactaggcacctgccaggg | |||
| ****************************************************************************************************************** | ||||
| rat | .(((........(((((((..(((((((.....(((...((..(((..((..((((......))))...)).....)))..))....)))....)).)))))..)))))))))) | 0.820 -27.20 | ||
| rat | chromosome:6:122579563:122579676:-1 | intergenic |
novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH (61 loci)
block2012 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.569 | no | no | 0.61/0.68 | 18/21/0.14 | 3.1 | 3.0 | 7 | 0 | 3 | 0 | 0 | 18 | 3arm | 1 | nd | 0.33 | 2 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------CCGCAAG------------------ | 3 | novel | ||
| seed | ------------------------------------------------------------AGCUCGU------------- | 3 | novel | ||
| seed | --------------------------------------------------------------CUCGUGA----------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S2 | |||
| -----------------------------------------------------------AAGCTCGTGAGCCCAGTG--- | 18 | 1 | 1 | 1 | |
| ------------------------------------------------------ACCGCAAGCTCGTGAGCCC------- | 19 | 2 | - | - | |
| ------------------------------------------------------ACCGCAAGCTCGTGAGCCCAG----- | 21 | - | 1 | - | |
| -------------------------------------------------------------GCTCGTGAGCCCAGTGTCC | 19 | - | 1 | - | |
| rat | ggaagcggcggcgataggcggaacccgaggtggtcacacggaaaggggtgagcgACCGCAAGCTCGTGAGCCCAGTGTCC | ||||
| ******************************************************************************** | |||||
| rat | (((.(((((.((((...((((.((((...(((....)))......))))......))))....))))..)))..)).))) | 0.450 -24.60 | |||
| rat | chromosome:10:4361146:4361225:-1 | intergenic |
block77922 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.824 | no | no | 0.70/0.78 | 18/23/0.67 | 1.3 | 1.7 | 3 | 0 | 2 | 0 | 3 | 5 | 5arm | 1 | nd | 0.35 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----UAGCCAG-------------------------------------------------------------- | 2 | novel | |
| seed | --------CAGCGCC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| -------CCAGCGCCAGTCGGAGCC------------------------------------------------ | 18 | 1 | - | |
| ---GTAGCCAGCGCCAGTCGGAGCCA----------------------------------------------- | 23 | - | 1 | |
| ---GTAGCCAGCGCCAGTCGGAG-------------------------------------------------- | 20 | - | 1 | |
| rat | cggGTAGCCAGCGCCAGTCGGAGCCAgcgcgagccgccgccgctgtcactgcctctgccaagtcctctgcccg | |||
| ************************************************************************* | ||||
| ........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000009586 ENSRNOG00000006989 Vamp2 | |||
| rat | (((((((...((..(((..((((.(((((((......))).))))...)).)).)))....))...))))))) | 0.890 -24.40 | ||
| rat | chromosome:10:55848262:55848334:1 | Same_strand|Boundary_non-coding|ENSRNOT00000009586|ENSRNOG00000006989 ## ENSRNOG00000006989|protein_coding|Vamp2|Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2). [Source:UniProtKB/Swiss-Prot;Acc:P63045] |
block78638 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.989 | no | no | 0.56/0.58 | 18/26/0.00 | 2.5 | 1.5 | 2 | 0 | 2 | 0 | 1 | 29 | 3arm | 6 | nd | 0.31 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------------GGCCACU------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------------CUCAUGG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------------------------------------------ACTCATGGAAGCAGGACC---- | 18 | 1 | - | |
| ----------------------------------------------------------------------------------------TGGCCACTCATGGAAGCAGGACCAGT- | 26 | - | 1 | |
| rat | gtgcttgtctgtttagttctgtgtggaaatgaaatgtggaaatgactgtccctgtgccaactggttgccctcccctttcccttgatctTGGCCACTCATGGAAGCAGGACCAGTa | |||
| ******************************************************************************************************************* | ||||
| rat | .((((.((((((((.....((.((((....((.....(((((.((..((.((.((....)).))..))..))...))))).....))....)))).))...)))))).)).)))) | 0.660 -23.40 | ||
| rat | chromosome:10:56795899:56796013:1 | intergenic |
block207151 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.862 | no | no | 0.52/0.58 | 19/23/0.50 | 3.0 | 1.0 | 2 | 0 | 2 | 0 | 4 | 7 | 5arm | 1 | nd | 0.47 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----ACAGUGC-------------------------------------------------------------------- | 1 | novel | |
| seed | -----------CCCAGAA-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ----AACAGTGCCCAGAAGCATGACAG----------------------------------------------------- | 23 | - | 1 | |
| ----------GCCCAGAAGCATGACAGAC--------------------------------------------------- | 19 | 1 | - | |
| rat | tggcAACAGTGCCCAGAAGCATGACAGACaaacttgcataaagacagatagttcgtggtggatcctagagtatgtgctat | |||
| ******************************************************************************** | ||||
| rat | (((((...((((...((..(((.((..((....(((........)))...))..)).)))..)).....)))).))))). | 0.420 -12.50 | ||
| rat | chromosome:12:3235828:3235907:1 | intergenic |
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