other hairpins
novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH (60 loci)
block2550999 [novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 110 | 0 | 10 | 0 | 16 | -2 | 5arm_loop | 3 | nd | 0.39 | 3 | 119 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------CAGCUUU--------------------------------------------- | 119 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------ACAGCTTTAATGCACTTC----------------------------------- | 18 | 14 | 12 | 20 | 21 | 10 | 16 | 5 | 10 | 4 | 7 | |
| rat | aggtctctttcaggccACAGCTTTAATGCACTTCcctggtgcagcagagcaactgagcagcctgggcct | |||||||||||
| ********************************************************************* | ||||||||||||
| rat | (((((.....(((((((..(((((..((((((.....))))))..)))))...))....)))))))))) | 0.950 -24.30 | ||||||||||
| rat | chromosome:9:105234259:105234327:-1 | intergenic |
block2581141 [novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.098 | no | no | 0.39/0.42 | 18/19/0.00 | 0.0 | 0.0 | 47 | 0 | 9 | 0 | 9 | -4 | 3arm_loop | 1 | nd | 0.33 | 3 | 67 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -------------------------------AAAGGUU------------------- | 67 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------TAAAGGTTAATGGTGGCA--------- | 18 | 12 | 2 | 18 | 7 | - | 2 | 10 | 2 | 2 | |
| ------------------------------TAAAGGTTAATGGTGGCAC-------- | 19 | 5 | - | 4 | 1 | 1 | - | 1 | - | - | |
| rat | gaagtatgatagctactaatgattagaattTAAAGGTTAATGGTGGCActtgaattc | ||||||||||
| ********************************************************* | |||||||||||
| rat | ...........(((((((.(((((..........))))).))))))).......... | 0.990 -10.20 | |||||||||
| rat | chromosome:9:28825896:28825952:1 | intergenic |
block2653849 [novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.650 | no | no | 0.28/0.32 | 18/19/0.00 | 0.0 | 0.0 | 149 | 0 | 10 | 0 | 20 | -1 | 3arm_loop | 1 | nd | 0.33 | 2 | 194 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------GACUGUA------------------------------ | 194 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------TGACTGTAAGAACTTTAT-------------------- | 18 | 53 | 20 | 30 | 21 | 3 | 1 | 5 | 11 | 13 | 25 | |
| ----------------------------------------TGACTGTAAGAACTTTATG------------------- | 19 | 2 | - | - | 3 | - | - | 1 | 1 | 2 | 3 | |
| rat | agcagaagttaaaaagattagatttagtgccatgtctgaaTGACTGTAAGAACTTTATgaacaagtgaatttcatgtt | |||||||||||
| ****************************************************************************** | ||||||||||||
| rat | ((((((((((........((((.((..(((...(((.....))).)))..)).))))..........)))))).)))) | 0.510 -9.87 | ||||||||||
| rat | chromosome:X:304270:304347:-1 | intergenic |
block2664590 [novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.50/0.56 | 18/22/0.22 | 0.0 | 0.2 | 4770 | 0 | 10 | 0 | 10 | -3 | 5arm_loop | 1 | nd | 0.32 | 2 | 6265 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------CCCUGUG--------------------------------------------- | 6214 | novel | |||||||||
| seed | ------------CCUGUGG-------------------------------------------- | 40 | novel | |||||||||
| seed | -------------CUGUGGU------------------------------------------- | 9 | novel | |||||||||
| seed | ----------UCCCUGU---------------------------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------TCCCTGTGGTCTAGTGGTT---------------------------------- | 19 | 517 | 579 | 140 | 271 | 354 | 555 | 594 | 382 | 337 | 1093 | |
| ----------TCCCTGTGGTCTAGTGGTTAG-------------------------------- | 21 | 167 | 181 | 45 | 86 | 115 | 141 | 89 | 85 | 81 | 359 | |
| -----------CCCTGTGGTCTAGTGGTTAG-------------------------------- | 20 | 3 | 6 | 3 | 3 | 4 | 5 | 3 | 4 | 3 | 5 | |
| ----------TCCCTGTGGTCTAGTGGT----------------------------------- | 18 | 6 | 3 | 2 | 3 | 10 | 1 | - | 2 | 1 | 11 | |
| ------------CCTGTGGTCTAGTGGTTAG-------------------------------- | 19 | - | 7 | 1 | - | - | 1 | - | - | - | - | |
| ----------TCCCTGTGGTCTAGTGGTTA--------------------------------- | 20 | - | 1 | 1 | - | - | - | - | - | - | - | |
| ----------TCCCTGTGGTCTAGTGGTTAGT------------------------------- | 22 | 1 | - | - | - | - | - | 1 | - | - | - | |
| ---------CTCCCTGTGGTCTAGTGGTTAG-------------------------------- | 22 | - | - | - | 1 | - | 1 | - | - | - | - | |
| -----------CCCTGTGGTCTAGTGGTT---------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | gtatatgaccTCCCTGTGGTCTAGTGGTTAGtactttatagacagcaggatgcaggaaatgct | |||||||||||
| *************************************************************** | ||||||||||||
| rat | ((((....(((.(((((.(((((..(((....)))...))))).)))))....)))..)))). | 0.630 -18.00 | ||||||||||
| rat | chromosome:X:12800438:12800500:-1 | intergenic |
block3040271 [novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.403 | no | no | 0.16/0.21 | 18/20/0.01 | 0.0 | 0.2 | 85 | 0 | 2 | 0 | 32 | -3 | 3arm_loop | 1 | nd | 0.32 | 2 | 94 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------UUUUACA------------------------------------------- | 92 | novel | |
| seed | -----------------------------------------AUUUUAC-------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------------ATTTTACATATTGTTTAC--------------------------------- | 18 | 50 | 15 | |
| -----------------------------------------ATTTTACATATTGTTTACC-------------------------------- | 19 | 20 | 7 | |
| ----------------------------------------TATTTTACATATTGTTTAC--------------------------------- | 19 | 1 | - | |
| ----------------------------------------TATTTTACATATTGTTTACC-------------------------------- | 20 | 1 | - | |
| rat | ttacactcttgaggaagatataagtagtaagccctgttaatATTTTACATATTGTTTACCattagtatttttgagaatttcacacatgtaaa | |||
| ******************************************************************************************** | ||||
| rat | (((((....((((((((((((.(((.((((((..((((((....))).)))..)))))).))).))))))))......))))....))))). | 0.840 -12.80 | ||
| rat | chromosome:X:104816355:104816446:1 | intergenic |
block3174185 [novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.52/0.56 | 18/21/0.00 | 0.0 | 0.0 | 1299 | 0 | 10 | 0 | 18 | -1 | 3arm | 1 | nd | 0.33 | 3 | 1710 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------CUGGGUC---------------------------- | 1708 | novel | |||||||||
| seed | ----------------------------------------------UGGGUCC--------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------ACTGGGTCCAAGACTGAG------------------ | 18 | 73 | 32 | 150 | 100 | 67 | 70 | 190 | 459 | 220 | 280 | |
| --------------------------------------------ACTGGGTCCAAGACTGAGT----------------- | 19 | 5 | - | 6 | 5 | 3 | 2 | 8 | 20 | 4 | 8 | |
| --------------------------------------------ACTGGGTCCAAGACTGAGTG---------------- | 20 | - | - | 1 | - | - | - | - | 4 | - | - | |
| ---------------------------------------------CTGGGTCCAAGACTGAGT----------------- | 18 | - | - | - | - | - | - | 1 | - | 1 | - | |
| --------------------------------------------ACTGGGTCCAAGACTGAGTGT--------------- | 21 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | acacatgaatggaaataggaggacctcaggtgaataccgggttaACTGGGTCCAAGACTGAGtgttccccgtgcatttgg | |||||||||||
| ******************************************************************************** | ||||||||||||
| rat | .((.(((.((((.....((((.((.((((.((....((((.....))))...))...)))))).)))))))).))).)). | 0.940 -23.10 | ||||||||||
| rat | chromosome:X:154208369:154208448:1 | intergenic |
block881287 [novel_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.279 | no | no | 0.37/0.42 | 19/21/0.36 | 0.3 0.4 | 0.0 1.2 | 31 8 | 0 0 | 7 3 | 0 0 | 17 6 | -1 6 | 3arm 3arm | 1 1 | nd nd | 0.35 0.47 | 3 4 | 59 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------------------------------------CCCAAUU---------------------------- | 36 | novel | ||||||
| seed | -----------------------------------UCCCAAU----------------------------- | 15 | novel | ||||||
| seed | ---------------------------------------------AACCACA------------------- | 7 | novel | ||||||
| seed | ------------------------------------------UCUAACC---------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------TCCCAATTCTAACCACACA----------------- | 19 | 5 | 2 | 2 | 2 | 1 | 22 | 1 | |
| ----------------------------------TTCCCAATTCTAACCACACA----------------- | 20 | 2 | 1 | 1 | - | 1 | 9 | 1 | |
| --------------------------------------------TAACCACACATATCAGGAAGT------ | 21 | - | - | 1 | - | - | 3 | - | |
| --------------------------------------------TAACCACACATATCAGGAA-------- | 19 | - | - | - | - | - | 2 | - | |
| -----------------------------------TCCCAATTCTAACCACACAT---------------- | 20 | - | - | 1 | - | - | - | - | |
| -----------------------------------------TTCTAACCACACATATCAG----------- | 19 | - | - | - | - | - | 1 | - | |
| --------------------------------------------TAACCACACATATCAGGAAG------- | 20 | - | 1 | - | - | - | - | - | |
| rat | tggttgagttatatggggagatgtggggctgtgtTTCCCAATTCTAACCACACAtatcaggaagtcaagca | ||||||||
| *********************************************************************** | |||||||||
| rat | ((.((((.(((((((.(((((..(((((.......)))))..)))..))...)))))....)).)))).)) | 0.980 -16.60 | |||||||
| rat | chromosome:1:129011105:129011175:-1 | intergenic |
novel_lenNOK_multiarm_loopOverlap_bulgeHIGH (58 loci)
block368485 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.50/0.65 | 18/23/0.67 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 26 36 | -3 -8 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.35 0.22 | 4 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------CGGCUUC---------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------CCAAUGC------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| --------------------------CCGGCTTCGCGCCAATGCAGAAC------------------------------------------- | 23 | - | 2 | |
| ------------------------------------GCCAATGCAGAACTTTGC-------------------------------------- | 18 | 1 | - | |
| rat | cgtcacagaattgggtttcagtcgctCCGGCTTCGCGCCAATGCAGAACTTTGCatctggccaaagtcagcctgttgctcactgcctttcgg | |||
| ******************************************************************************************** | ||||
| rat | ((...(((...(((((..(((..(((..(((((...((((((((((....)))))).))))..)))))))))))..)))))))).....)). | 0.930 -27.00 | ||
| rat | chromosome:14:87022808:87022899:-1 | intergenic |
block438001 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.178 | no | no | 0.48/0.65 | 19/23/0.50 | 0.0 0.7 0.0 | 0.0 0.0 1.5 | 1 3 2 | 0 0 0 | 1 2 2 | 0 0 0 | 43 35 25 | -15 -10 -2 | 5arm_loop_3arm 3arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.65 0.53 0.27 | 13 8 4 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------AGCGAAC--------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------GACGGAG---------------------------------------------- | 2 | novel | |||
| seed | -------------------------------------------------------AGACGGA----------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------AUUUUGU---------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------AGACGGAGAGCGAACGGTC----------------------------------- | 19 | 1 | 1 | - | - | |
| -------------------------------------------CATTTTGTGAAGAGACGGAGAGC------------------------------------------- | 23 | - | - | - | 1 | |
| ------------------------------------------------------GAGACGGAGAGCGAACGGTC----------------------------------- | 20 | - | 1 | - | - | |
| --------------------------------------------------------------GAGCGAACGGTCGTGTGGTTCC------------------------- | 22 | - | 1 | - | - | |
| --------------------------------------------------------------GAGCGAACGGTCGTGTGGT---------------------------- | 19 | - | - | 1 | - | |
| rat | cgggggctggacttttgcctcggcggcagaggagctcgggggcCATTTTGTGAAGAGACGGAGAGCGAACGGTCGTGTGGTTCCttgctgttgtagctccggcttctcg | |||||
| ************************************************************************************************************* | ||||||
| ...............................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060515 ENSRNOG00000011621 Hnrpc | |||||
| ...............................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060514 ENSRNOG00000011621 Hnrpc | |||||
| rat | .((..((((((.....((..((((((((.(((((((....((((..(((((.............))))).))))....)))))))))))))))..))))))))..)).. | 0.630 -42.72 | ||||
| rat | chromosome:15:27546596:27546704:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000060514|ENSRNOG00000011621 ## ENSRNOG00000011621|protein_coding|Hnrpc|heterogeneous nuclear ribonucleoprotein C [Source:RefSeq_peptide;Acc:NP_001020804] |
block648453 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.014 | no | no | 0.32/0.35 | 20/25/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 30 10 | -20 0 | 5arm_loop_3arm 3arm | 1 2 | nd nd | 0.40 0.30 | 5 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------AUUAGAC---------------------- | 1 | novel | |
| seed | -------------------------------GAUACCC-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------TATTAGACTCTTCTTTGCCA---------- | 20 | - | 1 | |
| ------------------------------TGATACCCTATATTAGACTCTTCTT--------------- | 25 | 1 | - | |
| rat | tcatgagcaggcacagatactactgcattcTGATACCCTATATTAGACTCTTCTTTGCCAgttcattgag | |||
| ********************************************************************** | ||||
| rat | ((((((((.((((.(((...........(((((((.....)))))))....))).)))).)))))).)). | 0.550 -17.26 | ||
| rat | chromosome:17:20759503:20759572:1 | intergenic |
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