other hairpins
novel_lenNOK_multiarm_loopOverlap_bulgeHIGH (58 loci)
sblock6522 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.572 | no | no | 0.42/0.55 | 19/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 34 27 | -4 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.26 0.27 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------GGACCUG----------------------------------------- | 1 | novel | |
| seed | -----------------------------------CCCAUGC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| ---------------------------------------------------AGGACCTGAACTGTGTGGGTGA--------------------------- | 22 | - | 1 | |
| ----------------------------------TCCCATGCATTCTTCAAAG----------------------------------------------- | 19 | 1 | - | |
| rat | tacgatctaagacctgtgttagactttcattgcaTCCCATGCATTCTTCAAAGGACCTGAACTGTGTGGGTGAtgggtttggtgcatttccaggcaagtg | |||
| **************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000052347 ENSRNOG00000034230 LOC686253 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057020 ENSRNOG00000034230 LOC686253 | |||
| rat | (((...((..((..((..(((((((..((((....(((((((((((.((....))...))).)))))))).)))))))))))..))..))..))...))) | 0.990 -23.90 | ||
| rat | chromosome:2:179415542:179415641:1 | Same_strand|Intronic_coding|ENSRNOT00000057020|ENSRNOG00000034230 ## ENSRNOG00000034230|protein_coding|LOC686253| |
sblock8349 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.152 | no | no | 0.28/0.30 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 43 | 29 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.25 0.50 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------AUUUUCU----------------------------------------------------- | 1 | novel | |
| seed | -----GAUUUUA------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----AGATTTTACTTCTGAATGTC------------------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------------------------------------------------TATTTTCTGTTTAAGTCC------------------------------------------- | 18 | - | 1 | |
| rat | tcacAGATTTTACTTCTGAATGTCatcaaattagcttatagataccaattgaaTATTTTCTGTTTAAGTCCcagtagttattaacagatataagtaaaaccaaatactctgtgg | |||
| ****************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042914 ENSRNOG00000033531 Cacna2d1 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000034969 ENSRNOG00000033531 Cacna2d1 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043865 ENSRNOG00000033531 Cacna2d1 | |||
| rat | .((((((((((((((....(((((.......(((((....(((...(((.(((....))).)))...))).....)))))......)))))))))))))........)))))). | 0.700 -17.82 | ||
| rat | chromosome:4:15389778:15389891:-1 | Same_strand|Intronic_coding|ENSRNOT00000034969|ENSRNOG00000033531 ## ENSRNOG00000033531|protein_coding|Cacna2d1|Voltage-dependent calcium channel subunit alpha-2/delta-1 precursor (Voltage-gated calcium channel subunit alpha-2/delta-1) [Contains: Voltage-dependent calcium channel subunit alpha-2-1; Voltage-dependent calcium channel subunit delta-1]. [Source:UniProtKB/Swiss-Prot;Acc:P54290] |
sblock9349 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.451 | no | no | 0.21/0.28 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 22 19 | 11 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.28 0.32 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------AAAGUUG------------------------------ | 1 | novel | |
| seed | -----------------------UGAGACA----------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ---------------------------------------------------TAAAGTTGCTCATTTTTTT------------------- | 19 | - | 1 | |
| ----------------------ATGAGACAGAAGAATTTA------------------------------------------------- | 18 | 1 | - | |
| rat | atgcatataataaagatgacttATGAGACAGAAGAATTTAtatcctacaacTAAAGTTGCTCATTTTTTTtctcaaaatctaatggcat | |||
| ***************************************************************************************** | ||||
| rat | ((((.........((((......(((((.((((((((..........((((....))))...)))))))))))))..))))....)))) | 0.410 -9.84 | ||
| rat | chromosome:5:76216546:76216634:-1 | intergenic ## {Repeats: dust 76216565 76216571 0 class=dust} |
sblock9471 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.219 | no | no | 0.63/0.68 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 33 | 35 -1 | 5arm 3arm | 1 1 | nd nd | 0.42 0.21 | 3 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----CCGUGUG------------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------GGGGGUC-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| --------------------------------------------------------------------TGGGGGTCCCCCTTTTTCC--------------------------------- | 19 | 1 | - | |
| ----CCCGTGTGCACAGCCACTC------------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | tgggCCCGTGTGCACAGCCACTCaagcaacctcagagacgggggtgggaggactcccctaggtgcagaTGGGGGTCCCCCTTTTTCCtcagctgaagcaaatgaaggtcagcacaaccac | |||
| ************************************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000010211 ENSRNOG00000007551 Q8VI28_RAT | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000010112 ENSRNOG00000007551 Q8VI28_RAT | |||
| rat | (((.....(((((...(((..(((.((....((((....(((((.(((.((((.((((...........)))))))))))....)))))..)))).))...))).)))..))))).))). | 0.410 -42.30 | ||
| rat | chromosome:5:118866084:118866203:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000057943|ENSRNOG00000007551 ## Opposite_strand|Intronic_coding|ENSRNOT00000010211|ENSRNOG00000007551 ## ENSRNOG00000007551|protein_coding|Q8VI28_RAT|INADL (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8VI28] |
sblock9664 [novel_lenNOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.416 | no | no | 0.71/0.79 | 19/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 38 | 32 -5 | 5arm 3arm_loop | 1 1 | 5 46 | 0.26 0.25 | 2 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------GGCAGGU--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------AUCGGGC------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| ----------------------------------------------------------GATCGGGCGCTCTGCTCGGGGATC-------------------------------------- | 24 | 1 | - | |
| -------GGGCAGGTGAGCAGCCGCG---------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | gtgttcgGGGCAGGTGAGCAGCCGCGggggtcccggaccccggcaggtcttggacgctGATCGGGCGCTCTGCTCGGGGATCgggtaggtctggccgtgtcctcacccgcactcgctcgc | |||
| ************************************************************************************************************************ | ||||
| >>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013563 ENSRNOG00000009683 Sdcbp | |||
| rat | (((..((((((.((((((..((.((.(((..(((((.(((((((((.....((.((((.....)))))))))).))))).)))))....))).)).))...)))))).)).))))..))) | 0.680 -58.00 | ||
| rat | chromosome:5:19822470:19822589:1 | Same_strand|Boundary_non-coding|ENSRNOT00000013563|ENSRNOG00000009683 ## Same_strand|Intronic_non-coding|ENSRNOT00000013563|ENSRNOG00000009683 ## ENSRNOG00000009683|protein_coding|Sdcbp|Syntenin-1 (Syndecan-binding protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q9JI92] ## {SimpF: 1 Eponine} |
novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH (57 loci)
block188497 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.67/0.67 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 30 | 5arm | 12 | nd | 0.33 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --UGCCUCA--------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -CTGCCTCACCTGCTCCTC----------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | tCTGCCTCACCTGCTCCTCagcctcagatgagctcctgcctgaacccctacccagggtgttcctggaaagagactctatactgtgccctaaaggccaggtgagtggga | ||
| ************************************************************************************************************ | |||
| rat | (((..((((((((..(((..((..(((((((((((...((.((((((((....)))).))))..))...))).))).)).))).)).....))).))))))))..))) | 0.980 -40.80 |
| rat | chromosome:12:20350634:20350741:-1 | intergenic |
block219008 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.67/0.67 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 30 | 5arm | 12 | nd | 0.33 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --UGCCUCA--------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -CTGCCTCACCTGCTCCTC----------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | tCTGCCTCACCTGCTCCTCagcctcagatgagctcctgcctgaacccctacccagggtgttcctggaaagagactctatactgtgccctaaaggccaggtgagtggga | ||
| ************************************************************************************************************ | |||
| rat | (((..((((((((..(((..((..(((((((((((...((.((((((((....)))).))))..))...))).))).)).))).)).....))).))))))))..))) | 0.980 -40.80 |
| rat | chromosome:12:20657544:20657651:1 | intergenic |
block428056 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.63/0.63 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 11 | 5arm | 18 | nd | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CUCCAUU------------------------------------------------------------------ | 1 | miR-136 |
| len | cloning frequencies | ||
| T3S1 | |||
| ----CCTCCATTTGGTCCCCTGG------------------------------------------------------- | 19 | 1 | |
| rat | gctcCCTCCATTTGGTCCCCTGGctctgccgtccaatgcccaggataattagtttaaccagcaccaataggaaggagc | ||
| ****************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044709 ENSRNOG00000033392 | ||
| rat | (((((.(((..(((((...((((..(((..((((........))))...))).....)))).)))))..))).))))) | 0.800 -25.90 |
| rat | chromosome:15:4720638:4720715:-1 | Same_strand|Intronic_coding|ENSRNOT00000044709|ENSRNOG00000033392 ## ENSRNOG00000033392|protein_coding|| |
block428645 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.63/0.63 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 11 | 5arm | 18 | nd | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----CUCCAUU------------------------------------------------------------------ | 1 | miR-136 |
| len | cloning frequencies | ||
| T3S1 | |||
| ---CCTCCATTTGGTCCCCTGG------------------------------------------------------- | 19 | 1 | |
| rat | ctcCCTCCATTTGGTCCCCTGGctctgccgtccaatgcccaggatannnnntttaaccagcaccaacaggaaggaga | ||
| ***************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050624 ENSRNOG00000040004 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048792 ENSRNOG00000033767 LOC316935 | ||
| rat | ((((.(((..(((((...((((.......((((........))))...........)))).)))))..))).)))). | 0.740 -20.97 |
| rat | chromosome:15:5594704:5594780:-1 | Same_strand|Intronic_coding|ENSRNOT00000048792|ENSRNOG00000033767 ## ENSRNOG00000033767|protein_coding|LOC316935| ## ENSRNOG00000040004|protein_coding|| |
block434161 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.63/0.63 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 11 | 5arm | 18 | nd | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CUCCAUU------------------------------------------------------------------ | 1 | miR-136 |
| len | cloning frequencies | ||
| T3S1 | |||
| ----CCTCCATTTGGTCCCCTGG------------------------------------------------------- | 19 | 1 | |
| rat | gctcCCTCCATTTGGTCCCCTGGctctgccgtccaatgcccaggataattagtttaaccagcaccaataggaaggagc | ||
| ****************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061053 ENSRNOG00000022493 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046494 ENSRNOG00000031436 | ||
| rat | (((((.(((..(((((...((((..(((..((((........))))...))).....)))).)))))..))).))))) | 0.800 -25.90 |
| rat | chromosome:15:19729998:19730075:-1 | Same_strand|Intronic_coding|ENSRNOT00000061053|ENSRNOG00000022493 ## Same_strand|Boundary_non-coding|ENSRNOT00000038839|ENSRNOG00000022493 ## ENSRNOG00000031436|protein_coding|| ## ENSRNOG00000022493|protein_coding|| |
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