other hairpins
novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH (57 loci)
block1063658 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 0 | 39 | 5arm | 14 | nd | 0.32 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------GCAGGCC--------------------------------------------- | 1 | novel |
| seed | -GCAGGCC---------------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------GCAGGCC----------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| TGCAGGCCTTCAGAGTGCA----------------------------------------------------------------------------------------------------- | 19 | 1 | |
| -----------------------------------------TGCAGGCCTTCAGAGTGCA------------------------------------------------------------ | 19 | 1 | |
| -------------------------------------------------------------------TGCAGGCCTTCAGAGTGCA---------------------------------- | 19 | 1 | |
| rat | TGCAGGCCTTCAGAGTGCAgccactgtggaaaagcccacacTGCAGGCCTTCAGAGTGCAgccactgTGCAGGCCTTCAGAGTGCAgccactgtggaaaagcccacactgcaggccttca | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000045636 ENSRNOG00000000539 Zfand3 | ||
| rat | ((.((((((.(((.(((...((((.((((.......(((.(((.((((((.((.((((....)))).)).)))))).))).)))...)))).)))).......))).))).)))))).)) | 0.940 -53.80 |
| rat | chromosome:20:8400246:8400365:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000045636|ENSRNOG00000000539 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000000648|ENSRNOG00000000539 ## ENSRNOG00000000539|protein_coding|Zfand3|AN1-type zinc finger protein 3 (Testis-expressed sequence 27). [Source:UniProtKB/Swiss-Prot;Acc:Q5U2M7] ## {Repeats: trf 10 29 0 class=trf,trf 92 111 0 class=trf,trf 104 122 0 class=trf,trf 51 70 0 class=trf,trf 2 21 0 class=trf} |
block1063660 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 0 | 39 | 5arm | 14 | nd | 0.32 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------GCAGGCC--------------------------------------------- | 1 | novel |
| seed | -GCAGGCC---------------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------GCAGGCC----------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| TGCAGGCCTTCAGAGTGCA----------------------------------------------------------------------------------------------------- | 19 | 1 | |
| -----------------------------------------TGCAGGCCTTCAGAGTGCA------------------------------------------------------------ | 19 | 1 | |
| -------------------------------------------------------------------TGCAGGCCTTCAGAGTGCA---------------------------------- | 19 | 1 | |
| rat | TGCAGGCCTTCAGAGTGCAgccactgtggaaaagcccacacTGCAGGCCTTCAGAGTGCAgccactgTGCAGGCCTTCAGAGTGCAgccactgtggaaaagcccacactgcaggccttca | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000045636 ENSRNOG00000000539 Zfand3 | ||
| rat | ((.((((((.(((.(((...((((.((((.......(((.(((.((((((.((.((((....)))).)).)))))).))).)))...)))).)))).......))).))).)))))).)) | 0.940 -53.80 |
| rat | chromosome:20:8400313:8400432:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000045636|ENSRNOG00000000539 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000000648|ENSRNOG00000000539 ## ENSRNOG00000000539|protein_coding|Zfand3|AN1-type zinc finger protein 3 (Testis-expressed sequence 27). [Source:UniProtKB/Swiss-Prot;Acc:Q5U2M7] ## {Repeats: trf 10 29 0 class=trf,trf 159 178 0 class=trf,trf 69 88 0 class=trf,trf 1 3 0 class=trf,trf 118 137 0 class=trf} |
novel_lenNOK_cloningOK_5varHIGH (57 loci)
block15909 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.354 | no | no | 0.42/0.61 | 18/23/0.21 | 3.2 1.5 | 4.3 1.5 | 12 2 | 0 0 | 4 2 | 0 0 | 8 19 | 19 12 | 5arm 5arm | 2 2 | nd nd | 0.22 0.42 | 2 4 | 14 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------CCUCCCU---------------------------------------------------------------------------------------- | 4 | novel | ||||
| seed | ---------CUGCUCC--------------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | ----------UGCUCCU-------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ---------------CUCCCUA--------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------GUGUUCC------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------CUCCUCC------------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | --------------------UAAGUGU---------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------CCCUAAG------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S2 | |||
| --------CCTGCTCCTCCCTAAGTG----------------------------------------------------------------------------------- | 18 | 3 | - | - | - | - | |
| -------------TCCTCCCTAAGTGTTCCTC----------------------------------------------------------------------------- | 19 | 1 | 2 | - | - | - | |
| ---------CTGCTCCTCCCTAAGTGTTCCTC----------------------------------------------------------------------------- | 23 | - | 1 | - | - | - | |
| -------------TCCTCCCTAAGTGTTCCTCT---------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | |
| -----------GCTCCTCCCTAAGTGTTCCT------------------------------------------------------------------------------ | 20 | - | - | - | 1 | - | |
| --------------CCTCCCTAAGTGTTCCTCT---------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| ----------------------AGTGTTCCTCTTCTACAAC-------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------CTAAGTGTTCCTCTTCTAC----------------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| ----------------TCCCTAAGTGTTCCTCTT--------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ---------CTGCTCCTCCCTAAGTGT---------------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| rat | tctgtgctCCTGCTCCTCCCTAAGTGTTCCTCTTCTACAACagctctacagtgaccgccgctatgagggagatcatgcacctgtaggctgggcagtgtgacaaccagat | ||||||
| ************************************************************************************************************* | |||||||
| rat | ((((((.((((((.((..((((.((((...(((((........(((...((((.....))))..))))))))....))))...))))..))))))...))))..)))). | 0.960 -27.70 | |||||
| rat | chromosome:10:36599058:36599166:-1 | intergenic |
block158948 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.290 | no | no | 0.67/0.78 | 18/23/0.27 | 3.3 0.0 | 2.9 0.0 | 9 2 | 0 0 | 3 2 | 0 0 | 7 19 | 19 15 | 5arm 5arm | 1 1 | nd nd | 0.22 0.42 | 3 3 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------CCAACCG---------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | --------------------CCGCGUA------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | --------------AGCCAAC------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -------------CAGCCAA------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------GCAGCCA-------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------GCCGCAG----------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------CCGCAGC---------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------UGCCGCA------------------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T3S2 | |||
| ---------------GCCAACCGCGTAGCCAGCC----------------------------------------------------------------------------- | 19 | - | - | 3 | |
| -------------------ACCGCGTAGCCAGCCGGTG------------------------------------------------------------------------- | 19 | 1 | 1 | - | |
| -----------CGCAGCCAACCGCGTAGCCA-------------------------------------------------------------------------------- | 20 | 1 | - | - | |
| ---------GCCGCAGCCAACCGCGTAGCC--------------------------------------------------------------------------------- | 21 | - | - | 1 | |
| -------CTGCCGCAGCCAACCGCG-------------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| -------------CAGCCAACCGCGTAGCCA-------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| --------TGCCGCAGCCAACCGCGTAGCCA-------------------------------------------------------------------------------- | 23 | - | 1 | - | |
| ------------GCAGCCAACCGCGTAGCC--------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | agtggctCTGCCGCAGCCAACCGCGTAGCCAGCCGGTGgcgcaggtgtctggggaccccgagcgcctagcctgggagcatgatcgtggacaagctgctggacgacagccgc | ||||
| *************************************************************************************************************** | |||||
| ..........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000041940 ENSRNOG00000031163 | ||||
| ...................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000041773 ENSRNOG00000031163 | ||||
| ...................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060582 ENSRNOG00000031163 | ||||
| ...................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000041116 ENSRNOG00000031163 | ||||
| rat | .((((((.(((((((((...(((((..((...((...(((..(((((..((((...))))..))))).)))..)).)).....)))))....))))).)).))..)))))) | 0.960 -48.60 | |||
| rat | chromosome:11:45794208:45794318:1 | Same_strand|Boundary_non-coding|ENSRNOT00000041773|ENSRNOG00000031163 ## ENSRNOG00000031163|protein_coding|| |
block209170 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.502 | no | no | 0.39/0.45 | 18/24/0.42 | 0.0 5.4 | 0.0 4.0 | 3 11 | 0 0 | 1 4 | 0 0 | 9 13 | 29 16 | 5arm 5arm | 1 1 | nd nd | 0.32 0.10 | 4 2 | 19 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------AAGUUCU------------------------------------------------------------------------------------------ | 5 | miR-148b | |||
| seed | --------------AGAAGUU-------------------------------------------------------------------------------------------- | 5 | novel | |||
| seed | -----------------------GACGUAA----------------------------------------------------------------------------------- | 5 | novel | |||
| seed | ----------GCUUAGA------------------------------------------------------------------------------------------------ | 3 | novel | |||
| seed | ---------------------CUGACGU------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| ----------------------TGACGTAAACCGTGATATG------------------------------------------------------------------------ | 19 | - | - | - | 4 | |
| -------------TAGAAGTTCTGACGTAAACCGTGA---------------------------------------------------------------------------- | 24 | - | - | - | 3 | |
| ---------TGCTTAGAAGTTCTGACGT------------------------------------------------------------------------------------- | 19 | - | - | - | 3 | |
| ---------------GAAGTTCTGACGTAAACC-------------------------------------------------------------------------------- | 18 | - | - | - | 2 | |
| ---------------GAAGTTCTGACGTAAACCGTGA---------------------------------------------------------------------------- | 22 | 1 | - | - | 1 | |
| -------------TAGAAGTTCTGACGTAAACC-------------------------------------------------------------------------------- | 20 | - | 2 | - | - | |
| ----------------------TGACGTAAACCGTGATAT------------------------------------------------------------------------- | 18 | - | - | 1 | - | |
| ---------------GAAGTTCTGACGTAAACCGT------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| --------------------TCTGACGTAAACCGTGATA-------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | gtttccggaTGCTTAGAAGTTCTGACGTAAACCGTGATATGgcctttcctctatattcccaatgatatccatgatggttttagtacagctcaacttctttcttgaccaagacc | |||||
| ***************************************************************************************************************** | ||||||
| rat | ((((..((......((((((((((((..(((((((..(((((..........(((((......)))))))))))))))))..)).)))...))))))).......)).)))). | 0.640 -20.12 | ||||
| rat | chromosome:12:5620861:5620973:1 | intergenic |
block226876 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.286 | no | no | 0.44/0.67 | 18/24/0.45 | 0.8 1.9 0.0 | 1.6 1.0 0.0 | 8 20 1 | 0 0 0 | 4 6 1 | 0 0 0 | 21 10 6 | 13 25 34 | 3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.25 0.43 0.44 | 2 8 8 | 29 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------------------------------CCGCCAG------------------------- | 10 | novel | ||||||
| seed | --------------------------------------------------------------------------GUUCCGU------------------------------------- | 7 | novel | ||||||
| seed | -----------------------------------------------------------------------------------------CCAGUUC---------------------- | 5 | novel | ||||||
| seed | ------------------------------------------------------------------------------------------CAGUUCC--------------------- | 3 | novel | ||||||
| seed | ---------------------------------------------------------------------------------------CGCCAGU------------------------ | 2 | novel | ||||||
| seed | -----------------------------------------------------------------------------------------------CCGUCUC---------------- | 1 | miR-340 | ||||||
| seed | --------------------------------------------------------------------------------UGGAGAC------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------GCCAGTTCCGTCTCTACTC----------- | 19 | 3 | - | - | 1 | - | - | 1 | |
| -------------------------------------------------------------------------AGTTCCGTGGAGACCGCCAG------------------------- | 20 | 3 | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------------------------ACCGCCAGTTCCGTCTCTACTC----------- | 22 | - | - | 1 | - | - | 2 | - | |
| -----------------------------------------------------------------------------------------CCAGTTCCGTCTCTACTC----------- | 18 | - | - | 3 | - | - | - | - | |
| -------------------------------------------------------------------------------------ACCGCCAGTTCCGTCTCTAC------------- | 20 | 1 | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------CCGCCAGTTCCGTCTCTAC------------- | 19 | - | - | - | - | 2 | - | - | |
| -------------------------------------------------------------------------AGTTCCGTGGAGACCGCCAGTTCC--------------------- | 24 | - | 2 | - | - | - | - | - | |
| -------------------------------------------------------------------------------------ACCGCCAGTTCCGTCTCTA-------------- | 19 | - | - | - | 2 | - | - | - | |
| -------------------------------------------------------------------------AGTTCCGTGGAGACCGCCA-------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------------------TCCGTCTCTACTCTTTTG------ | 18 | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------------------------ACCGCCAGTTCCGTCTCTACTCT---------- | 23 | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------------------------------------ACCGCCAGTTCCGTCTCT--------------- | 18 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------GTGGAGACCGCCAGTTCC--------------------- | 18 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------ACCGCCAGTTCCGTCTCTACT------------ | 21 | - | - | - | - | 1 | - | - | |
| rat | tttccgcggaggaatccaggggtgggcggggctcccgatgactatataaagagacgcctcgcgtcccgcagctAGTTCCGTGGAGACCGCCAGTTCCGTCTCTACTCTTTTGtgagga | ||||||||
| ********************************************************************************************************************** | |||||||||
| .......................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049027 ENSRNOG00000028756 Ubb | ||||||||
| ...............................................................................................................>>>>>>>>>>>>>>>>> | ENSRNOT00000045162 ENSRNOG00000028756 Ubb | ||||||||
| rat | .((((((((((((.....((((..(((((..((((((..(((((........(((((...))))).......))))).)).)))).)))))..))))........))))))))).))) | 0.870 -41.38 | |||||||
| rat | chromosome:12:32333105:32333222:1 | Same_strand|Boundary_non-coding|ENSRNOT00000049027|ENSRNOG00000028756 ## ENSRNOG00000028756|protein_coding|Ubb|Ubiquitin. [Source:UniProtKB/Swiss-Prot;Acc:P62989] ## {SimpF: 1 Eponine} |
block231385 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.192 | no | no | 0.59/0.67 | 18/22/0.60 | 2.4 | 4.2 | 10 | 0 | 5 | 0 | 24 | 3 | 3arm | 1 | nd | 0.10 | 1 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------------------GCGGCAA-------------------------------------- | 6 | novel | ||||
| seed | -----------------------------------------------------------------------GGGAGCG------------------------------------------ | 4 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------AGCGGCAAGCATGGAGGAC--------------------------- | 19 | 1 | 1 | - | 1 | - | |
| --------------------------------------------------------------------------AGCGGCAAGCATGGAGGACC-------------------------- | 20 | - | - | 1 | 1 | - | |
| ----------------------------------------------------------------------TGGGAGCGGCAAGCATGGAG------------------------------ | 20 | - | - | - | 1 | 1 | |
| --------------------------------------------------------------------------AGCGGCAAGCATGGAGGACCAT------------------------ | 22 | 1 | - | - | - | - | |
| ----------------------------------------------------------------------TGGGAGCGGCAAGCATGG-------------------------------- | 18 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------TGGGAGCGGCAAGCATGGAGG----------------------------- | 21 | - | - | - | - | 1 | |
| rat | ccgactacggacacttccggcggatggacagtccgtccacagctggctgcccctgggtgacgcgtaggccTGGGAGCGGCAAGCATGGAGGACCATaacctggaggagttccgccagcgc | ||||||
| ************************************************************************************************************************ | |||||||
| .........................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000001488 ENSRNOG00000001126 NP_001100615.1 | ||||||
| rat | .((.((.(((((.(((((((...((((....(((.((((..(((.(((((.((..(((.........)))..)).))))).))).)))))))))))...))))))).)).)))..)))). | 0.440 -51.60 | |||||
| rat | chromosome:12:39574196:39574315:1 | Same_strand|Boundary_non-coding|ENSRNOT00000001488|ENSRNOG00000001126 ## ENSRNOG00000001126|protein_coding|NP_001100615.1|F-box and WD-40 domain protein 8 [Source:RefSeq_peptide;Acc:NP_001100615] |
block602294 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.35/0.55 | 18/26/0.64 | 0.0 2.0 0.0 | 0.0 2.2 0.0 | 1 8 2 | 0 0 0 | 1 2 1 | 0 0 0 | 7 18 38 | 24 4 -5 | 5arm 5arm 5arm_loop | 1 1 1 | nd nd nd | 0.38 0.18 0.36 | 7 2 6 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------CCAAAAU--------------------------------------------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------CCCAACG-------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------UCCAAAA---------------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------GAGUGUG--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------AGCUUCC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------GAAGCUU---------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------GCUUCCA------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------TCCCAACGTAACCTTCTCTGCC------------------------------------------------------------ | 22 | - | 2 | |
| ------------------------TTCCAAAATTGTGATCCCAAC--------------------------------------------------------------------------- | 21 | - | 2 | |
| ---------------------AGCTTCCAAAATTGTGATCCCA----------------------------------------------------------------------------- | 22 | - | 1 | |
| -------------------------TCCAAAATTGTGATCCCAA---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------TGAAGCTTCCAAAATTGTGA---------------------------------------------------------------------------------- | 20 | - | 1 | |
| -------------------------TCCAAAATTGTGATCCCAACGTAACC--------------------------------------------------------------------- | 26 | - | 1 | |
| -------------------------TCCAAAATTGTGATCCCA----------------------------------------------------------------------------- | 18 | 1 | - | |
| -------GGAGTGTGGCCTGAAGCTTCCAAA----------------------------------------------------------------------------------------- | 24 | 1 | - | |
| --------------------AAGCTTCCAAAATTGTGATCCCAAC--------------------------------------------------------------------------- | 25 | - | 1 | |
| rat | aaggagtGGAGTGTGGCCTGAAGCTTCCAAAATTGTGATCCCAACGTAACCTTCTCTGCCaagaagctgcgcttgggcatttgtgagtgatggtaggcgaactgacatgcttgtctcctg | |||
| ************************************************************************************************************************ | ||||
| rat | .(((((..(((((((.......(((((((..(((..((((((((((((..(((((......))))).)))).))))).)))....)))..))).)))).......)))))))..))))). | 0.970 -38.24 | ||
| rat | chromosome:17:18983425:18983544:-1 | intergenic |
block627836 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.169 | no | no | 0.39/0.45 | 18/23/0.55 | 1.8 | 3.4 | 20 | 0 | 6 | 0 | 17 | 0 | 3arm | 3 | nd | 0.29 | 3 | 20 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------------AGCACAU----------------------------- | 9 | novel | |||||
| seed | -------------------------------------------CUCAGCA-------------------------------- | 8 | novel | |||||
| seed | ---------------------------------------------CAGCACA------------------------------ | 2 | novel | |||||
| seed | -----------------------------------------------GCACAUC---------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| ---------------------------------------------CAGCACATCATGGTTTAC------------------- | 18 | - | 2 | 2 | - | 1 | - | |
| ---------------------------------------------CAGCACATCATGGTTTACAC----------------- | 20 | - | 2 | 1 | - | 1 | - | |
| ------------------------------------------TCTCAGCACATCATGGTTTACAC----------------- | 23 | 1 | 1 | - | - | - | - | |
| --------------------------------------------TCAGCACATCATGGTTTACAC----------------- | 21 | - | - | 2 | - | - | - | |
| ------------------------------------------TCTCAGCACATCATGGTTTAC------------------- | 21 | - | - | - | 1 | 1 | - | |
| ------------------------------------------TCTCAGCACATCATGGTT---------------------- | 18 | - | - | - | - | 2 | - | |
| ----------------------------------------------AGCACATCATGGTTTACA------------------ | 18 | - | - | - | 1 | - | - | |
| ------------------------------------------TCTCAGCACATCATGGTTT--------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------TCTCAGCACATCATGGTTTA-------------------- | 20 | - | - | 1 | - | - | - | |
| rat | gtccagccaggcttctgtacatgtatgtatagagatagttacTCTCAGCACATCATGGTTTACACtgtctgattaatgagca | |||||||
| ********************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047512 ENSRNOG00000030775 Adarb2 | |||||||
| rat | ((.((..(((((...((((((((.((((...((((.......))))...))))))))...))))..))))).....)).)). | 0.830 -17.60 | ||||||
| rat | chromosome:17:73157511:73157592:-1 | Same_strand|Intronic_coding|ENSRNOT00000047512|ENSRNOG00000030775 ## ENSRNOG00000030775|protein_coding|Adarb2|Double-stranded RNA-specific editase B2 (EC 3.5.-.-) (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2). [Source:UniProtKB/Swiss-Prot;Acc:P97616] |
block663605 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.37/0.68 | 18/21/0.31 | 1.2 0.0 2.0 | 1.0 0.0 1.5 | 10 1 2 | 0 0 0 | 4 1 2 | 0 0 0 | 21 15 4 | 11 19 28 | 3arm 3arm 3arm | 1 1 2 | nd nd nd | 0.57 0.43 0.21 | 9 5 3 | 13 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------------------------------------------------UGAGUAU----------------------------------- | 4 | novel | |||||
| seed | --------------------------------------------------------------------------------AGUAUCU--------------------------------- | 3 | novel | |||||
| seed | -----------------------------------------------------------------------------UUGAGUA------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------GAGUAUC---------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------------------------------UGUCUGG------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------------------------------------UGGACGU--------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------------------UAUCUUU------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------------CUUUCGG---------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S2 | |||
| -----------------------------------------------------------------------------TTGAGTATCTTTCGGAATG------------------------ | 19 | - | - | - | 2 | 1 | - | |
| -------------------------------------------------------------------------------GAGTATCTTTCGGAATGTC---------------------- | 19 | 2 | - | - | - | - | - | |
| ---------------------------------------------------------------------------------GTATCTTTCGGAATGTCT--------------------- | 18 | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------CTTGAGTATCTTTCGGAATG------------------------ | 20 | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------------------TTGAGTATCTTTCGGAATGTC---------------------- | 21 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------------------CTGGACGTGGGAAGCAGGG---- | 19 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------------TGAGTATCTTTCGGAATG------------------------ | 18 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------GAGTATCTTTCGGAATGT----------------------- | 18 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------------TCTTTCGGAATGTCTGGACGT--------------- | 21 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------------ATGTCTGGACGTGGGAAGCA------- | 20 | - | - | 1 | - | - | - | |
| rat | atcgcataggctctttttcgcgaccagagaatcctataaaaatcaagctcctcacacttcagcataagtgtcataaCTTGAGTATCTTTCGGAATGTCTGGACGTGGGAAGCAGGGcggc | |||||||
| ************************************************************************************************************************ | ||||||||
| ..................................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000059342 ENSRNOG00000038836 LOC684807 | |||||||
| rat | .((((....(((...(((((((.(((((...(((........(((((......((((((......)))))).....))))).........)))...))))).))))))))))...)))). | 0.990 -34.03 | ||||||
| rat | chromosome:17:50352670:50352789:1 | Same_strand|Boundary_non-coding|ENSRNOT00000059342|ENSRNOG00000038836 ## ENSRNOG00000038836|protein_coding|LOC684807|Histone H2A type 3. [Source:UniProtKB/Swiss-Prot;Acc:Q4FZT6] |
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