other hairpins
novel_lenNOK_cloningOK_5varHIGH (57 loci)
block1094210 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.50/0.62 | 18/22/0.40 | 1.3 | 1.6 | 10 | 0 | 4 | 0 | 10 | 16 | 5arm | 1 | nd | 0.22 | 3 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------AGAGCCA----------------------------------------------------------------------------------------------- | 6 | novel | |||
| seed | ------------------AGCCAAG--------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------GACUAGA--------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------GGACUAG---------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ---------------TAGAGCCAAGCCTTCAAGG------------------------------------------------------------------------------------ | 19 | - | - | 1 | 2 | |
| ---------------TAGAGCCAAGCCTTCAAG------------------------------------------------------------------------------------- | 18 | 1 | - | - | 2 | |
| -----------------GAGCCAAGCCTTCAAGGCCAG-------------------------------------------------------------------------------- | 21 | - | - | - | 2 | |
| -----------GGACTAGAGCCAAGCCTTCA--------------------------------------------------------------------------------------- | 20 | - | 1 | - | - | |
| ----------GGGACTAGAGCCAAGCCTTCAA-------------------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| rat | caggtaaaagGGGACTAGAGCCAAGCCTTCAAGGCCAGcatgggcccttctggctgggctgccagtagggagcctatgcctacctaggctgtgtcaagtagctggccctcagattcct | |||||
| ********************************************************************************************************************** | ||||||
| rat | .(((.....((((.((((.(((((((((...(((...(((((((((((((((((......))))).)))).))))))))...)))))))).))....))..))))))))......))) | 0.710 -49.40 | ||||
| rat | chromosome:20:5563371:5563488:1 | intergenic |
block1413513 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.410 | no | no | 0.26/0.45 | 18/24/0.59 | 1.5 | 1.0 | 10 | 0 | 3 | 0 | 26 | 3 | 5arm | 1 | nd | 0.27 | 3 | 17 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------AGCAUAG---------------------------------------------------------------------------- | 8 | novel | ||
| seed | --------------------------------AGGUGGA----------------------------------------------------------------------- | 5 | novel | ||
| seed | --------------------UGGUAAU----------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------UAAUAGC-------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------GGAAAUA------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------AAUAGCA------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------------TAGCATAGGTGGAAATATTTGA-------------------------------------------------------------- | 22 | - | - | 5 | |
| -------------------------------TAGGTGGAAATATTTGATT------------------------------------------------------------ | 19 | - | - | 3 | |
| --------------------------TAGCATAGGTGGAAATATTTGATT------------------------------------------------------------ | 24 | - | 2 | - | |
| -------------------------------TAGGTGGAAATATTTGATTACCGG------------------------------------------------------- | 24 | 1 | - | 1 | |
| --------------------------TAGCATAGGTGGAAATATT----------------------------------------------------------------- | 19 | - | - | 1 | |
| ----------------------GTAATAGCATAGGTGGAAA--------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------TGGAAATATTTGATTACC--------------------------------------------------------- | 18 | - | - | 1 | |
| -----------------------TAATAGCATAGGTGGAAAT-------------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------GTGGTAATAGCATAGGTGGA----------------------------------------------------------------------- | 20 | - | - | 1 | |
| rat | tgggttcttagtgctatcagtggtaaTAGCATAGGTGGAAATATTTGATTaccggctggttgataaaaattactccaagcttgtgctccactcagtctctctgcaagtcc | ||||
| ************************************************************************************************************** | |||||
| rat | .(((((..(((.(((...(((((....((((((((((((...((((....(((....)))......))))...)))..)))))))))))))).)))....)))..))))) | 0.770 -23.70 | |||
| rat | chromosome:3:141076087:141076196:-1 | intergenic |
block1434242 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.124 | no | no | 0.67/0.80 | 19/22/0.65 | 0.0 1.1 | 0.0 1.6 | 1 16 | 0 0 | 1 7 | 0 0 | 32 22 | -2 4 | 3arm_loop 3arm | 1 1 | nd nd | 0.19 0.10 | 2 1 | 17 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ------------------------------------------------------------------GCAGCAG-------------------------------------- | 6 | novel | ||||||
| seed | --------------------------------------------------------------------AGCAGCC------------------------------------ | 5 | novel | ||||||
| seed | -----------------------------------------------------------------CGCAGCA--------------------------------------- | 4 | novel | ||||||
| seed | ---------------------------------------------------------------------GCAGCCC----------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------GGUUUCC--------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------CAGCAGCCCTGCACCCCTC------------------------- | 19 | - | - | - | - | 1 | 1 | 1 | |
| -----------------------------------------------------------------CGCAGCAGCCCTGCACCCCT-------------------------- | 20 | 1 | - | 1 | - | 1 | - | - | |
| -----------------------------------------------------------------CGCAGCAGCCCTGCACCCCTCC------------------------ | 22 | - | - | - | - | - | - | 2 | |
| ----------------------------------------------------------------CCGCAGCAGCCCTGCACCC---------------------------- | 19 | - | - | - | - | 1 | 1 | - | |
| -------------------------------------------------------------------CAGCAGCCCTGCACCCCTCCGG---------------------- | 22 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------CCGCAGCAGCCCTGCACCCCT-------------------------- | 21 | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------AGCAGCCCTGCACCCCTCC------------------------ | 19 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------AGGTTTCCGCAGCAGCCCTGC-------------------------------- | 21 | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------CAGCAGCCCTGCACCCCTCCG----------------------- | 21 | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------CGCAGCAGCCCTGCACCCCTC------------------------- | 21 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------CCGCAGCAGCCCTGCACCCC--------------------------- | 20 | 1 | - | - | - | - | - | - | |
| rat | atagtcggaagtgagggtctgggaaggggagtggttcggggctgctgcgcagcgcgccAGGTTTCCGCAGCAGCCCTGCACCCCTCCGGgtcgcctccaaacgcaacgctg | ||||||||
| *************************************************************************************************************** | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047196 ENSRNOG00000032607 Lcn13 | ||||||||
| rat | .(((.((...(((..((...((((...((((.(((.(((((((((((((.(((.......)))..))))))))))))).))).))))...)).)).))...)))..))))) | 0.950 -50.90 | |||||||
| rat | chromosome:3:3864840:3864950:1 | Same_strand|Intronic_coding|ENSRNOT00000047196|ENSRNOG00000032607 ## ENSRNOG00000032607|protein_coding|Lcn13|lipocalin 13 Gene [Source:MGI (curated);Acc:Lcn13-001] |
block1469294 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.44/0.52 | 19/25/0.62 | 1.1 0.5 | 0.0 1.0 | 17 2 | 0 0 | 1 2 | 0 0 | 10 0 | 17 27 | 3arm 3arm | 1 1 | nd nd | 0.36 0.29 | 3 3 | 21 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------------CCUAGUU------------------------- | 10 | novel | ||
| seed | -----------------------------------------------------------------------------------UUCCUAG--------------------------- | 5 | miR-384 | ||
| seed | ----------------------------------------------------------------------------------------AGUUCUC---------------------- | 3 | novel | ||
| seed | -----------------------------------------------------------------------------------------GUUCUCC--------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------------CCAGAGU---------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------------UCCAGAG----------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| ------------------------------------------------------------------------------------TCCTAGTTCTCCAGAGTTCTCAG---------- | 23 | - | - | 9 | |
| ----------------------------------------------------------------------------------TTTCCTAGTTCTCCAGAGTTCTCAG---------- | 25 | - | - | 5 | |
| ---------------------------------------------------------------------------------------TAGTTCTCCAGAGTTCTCAG---------- | 20 | - | - | 3 | |
| ---------------------------------------------------------------------------------------------TCCAGAGTTCTCAGCATTTCCC-- | 22 | - | 1 | - | |
| ------------------------------------------------------------------------------------TCCTAGTTCTCCAGAGTTCTCAGCA-------- | 25 | - | - | 1 | |
| --------------------------------------------------------------------------------------------CTCCAGAGTTCTCAGCATTTCCCTC | 25 | 1 | - | - | |
| ----------------------------------------------------------------------------------------AGTTCTCCAGAGTTCTCAG---------- | 19 | - | - | 1 | |
| rat | cgagtgagaaaacctgctgcctgccggattcctgggaaggccagagccaggatctggctctccatgcttttcattcctggctTTTCCTAGTTCTCCAGAGTTCTCAGcatttccctc | ||||
| ********************************************************************************************************************* | |||||
| rat | .(((.((((.....(((((...((.(((...(((((((.....(((((((((...(((.......)))......))))))))))))))))...)))...))...))))))))).))) | 0.470 -38.60 | |||
| rat | chromosome:3:76935635:76935751:1 | intergenic |
block1469574 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.413 | no | no | 0.32/0.44 | 18/24/0.31 | 3.0 | 1.8 | 13 | 0 | 2 | 0 | 13 | 2 | 3arm | 1 | nd | 0.11 | 1 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------AAGUGUU-------------------------------- | 5 | novel | |
| seed | ------------------------------------------------------------UACAGAA------------------------- | 4 | novel | |
| seed | -------------------------------------------------------------ACAGAAG------------------------ | 4 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -----------------------------------------------------------TTACAGAAGAGTTGGTGCA-------------- | 19 | 1 | 3 | |
| ------------------------------------------------------------TACAGAAGAGTTGGTGCAT------------- | 19 | - | 3 | |
| ----------------------------------------------------TAAGTGTTTACAGAAGAGTTGGTG---------------- | 24 | - | 2 | |
| ----------------------------------------------------TAAGTGTTTACAGAAGAGT--------------------- | 19 | - | 1 | |
| ------------------------------------------------------------TACAGAAGAGTTGGTGCA-------------- | 18 | - | 1 | |
| ----------------------------------------------------TAAGTGTTTACAGAAGAGTTGG------------------ | 22 | - | 1 | |
| ----------------------------------------------------TAAGTGTTTACAGAAGAGTTG------------------- | 21 | - | 1 | |
| rat | tccagggagagcctgtagcataaattaacatctcggtatctacgttcaaggaTAAGTGTTTACAGAAGAGTTGGTGCATaggtaggcagtgg | |||
| ******************************************************************************************** | ||||
| rat | .(((......((((((.((((....((((.((((.(((..(((..((...))...)))..))).)).))))))))))))))))......))) | 0.810 -18.20 | ||
| rat | chromosome:3:76945934:76946025:1 | intergenic |
block1574930 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.085 | no | no | 0.35/0.43 | 18/24/0.56 | 2.8 0.0 1.7 | 4.0 1.0 0.7 | 4 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 5 18 28 | 21 13 1 | 5arm 5arm 5arm | 1 1 1 | nd nd nd | 0.42 0.32 0.23 | 4 5 3 | 16 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------UGUCAGU----------------------------------------------------------- | 5 | novel | |||
| seed | -----------------------------ACACUUG---------------------------------------------------------------- | 4 | novel | |||
| seed | -------------------GGGAAAU-------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------CAUGUUC----------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------CACUUGU--------------------------------------------------------------- | 1 | novel | |||
| seed | ------ACUUCAU--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------UCAUGUU------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------TTGTCAGTGTTGGTACATG------------------------------------------------ | 19 | - | - | 4 | - | |
| ----------------------------TACACTTGTCAGTGTTGGTACA-------------------------------------------------- | 22 | 1 | - | 2 | - | |
| ----------------------------TACACTTGTCAGTGTTGGTACATG------------------------------------------------ | 24 | - | - | 1 | - | |
| -----TACTTCATGTTCCTGGGAA---------------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| ------------------TGGGAAATTTTACACTTGTCAG------------------------------------------------------------ | 22 | - | - | 1 | - | |
| ------------------TGGGAAATTTTACACTTGTC-------------------------------------------------------------- | 20 | - | - | 1 | - | |
| -----------------------------ACACTTGTCAGTGTTGGTACA-------------------------------------------------- | 21 | - | - | 1 | - | |
| ---------TCATGTTCCTGGGAAATTTTACA-------------------------------------------------------------------- | 23 | - | - | 1 | - | |
| ---------TCATGTTCCTGGGAAATTTT----------------------------------------------------------------------- | 20 | - | - | 1 | - | |
| --------TTCATGTTCCTGGGAAATT------------------------------------------------------------------------- | 19 | 1 | - | - | - | |
| ---------------------------------TTGTCAGTGTTGGTACAT------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | aggtgtacttcatgttcctgggaaatttTACACTTGTCAGTGTTGGTACATGgtaggccattttgaccactgaagtgtttcctttgcacagtgtttcctg | |||||
| **************************************************************************************************** | ||||||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | |||||
| rat | (((..((((...(((....(((((.....(((((..((((((((((...((((....)))).))))).)))))))))))))))..))).))))...))). | 0.940 -25.10 | ||||
| rat | chromosome:4:119283428:119283527:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
block1695812 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.065 | no | no | 0.47/0.47 | 19/19/0.00 | 1.6 | 1.6 | 10 | 0 | 3 | 0 | 28 | 2 | 3arm | 1 | nd | 0.11 | 1 | 13 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------GCUCUUU--------------------------------------- | 7 | novel | ||
| seed | ------------------------------------------------------------------CUCUGCU------------------------------------------- | 3 | novel | ||
| seed | --------------------------------------------------------------------CUGCUCU----------------------------------------- | 3 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------------------------------------------------------------------TGCTCTTTTGCTGGTTGCA---------------------------- | 19 | 1 | 1 | 5 | |
| -------------------------------------------------------------------TCTGCTCTTTTGCTGGTTG------------------------------ | 19 | - | 1 | 2 | |
| -----------------------------------------------------------------TCTCTGCTCTTTTGCTGGT-------------------------------- | 19 | - | - | 3 | |
| rat | gtctcaatctctctcttcaccccaggagtaatgggaaaagggcagggcaaggactctgtcaaaccTCTCTGCTCTTTTGCTGGTTGCAttcaaagtgaggaagccaggaggaagat | ||||
| ******************************************************************************************************************** | |||||
| rat | ((((...(((((.(((((((....((((((((.((((((((((((((..(((...........))))))))))))))).)).))))).)))...))))))).....))))).)))) | 0.870 -37.30 | |||
| rat | chromosome:4:164247571:164247686:1 | intergenic |
block1766563 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.26/0.39 | 18/23/0.12 | 1.6 | 1.6 | 9 | 0 | 7 | 0 | 20 | 13 | 5arm | 1 | nd | 0.21 | 2 | 16 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---------------------CUCUCUU-------------------------------------------------------------------------------------------- | 6 | novel | ||||||
| seed | -------------------------CUUCCAA---------------------------------------------------------------------------------------- | 4 | novel | ||||||
| seed | ----------------------UCUCUUC------------------------------------------------------------------------------------------- | 4 | novel | ||||||
| seed | --------------------ACUCUCU--------------------------------------------------------------------------------------------- | 2 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------ACTCTCTTCCAATGTCTAA--------------------------------------------------------------------------------- | 19 | - | - | 1 | 1 | - | - | 4 | |
| ------------------------TCTTCCAATGTCTAATTTA----------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | 3 | |
| ---------------------CTCTCTTCCAATGTCTAAT-------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | |
| ---------------------CTCTCTTCCAATGTCTAA--------------------------------------------------------------------------------- | 18 | 1 | - | - | - | 1 | - | - | |
| -------------------AACTCTCTTCCAATGTCTAATTT------------------------------------------------------------------------------ | 23 | - | - | - | - | - | 1 | 1 | |
| rat | acttttcttttaaggggacaACTCTCTTCCAATGTCTAATTTAtaagctgtgcaagacattagggatttgaagcttttaattgggggtgggagattgttgttgtaaagtccaggataagc | ||||||||
| ************************************************************************************************************************ | |||||||||
| rat | .(((.((((....(((((((((..((((((.((.(((((((...(((((...((((..........)))).)))))..))))))).))))))))..))))))......))))))).))). | 0.940 -30.70 | |||||||
| rat | chromosome:5:114520619:114520738:-1 | intergenic |
block914180 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.107 | no | no | 0.67/0.83 | 18/25/0.48 | 0.0 0.8 1.2 | 1.8 1.7 0.0 | 12 6 5 | 0 0 0 | 4 5 3 | 0 0 0 | 0 10 20 | 26 15 4 | 5arm 5arm 5arm | 1 1 1 | nd nd nd | 0.32 0.26 0.33 | 3 3 5 | 23 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -GCACUGG------------------------------------------------------------------------------------------ | 12 | novel | ||||||
| seed | ------------GGCACGC------------------------------------------------------------------------------- | 5 | novel | ||||||
| seed | ----------------------UGUGGGC--------------------------------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------GGCCGGG----------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------UGGCACG-------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------GUGGGCC-------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------GUGUGGG---------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| GGCACTGGTGATGGCACGC------------------------------------------------------------------------------- | 19 | 1 | - | 1 | 1 | 1 | - | - | |
| -----------TGGCACGCCCGTGTGGGCC-------------------------------------------------------------------- | 19 | - | - | 1 | 1 | - | 1 | 1 | |
| GGCACTGGTGATGGCACG-------------------------------------------------------------------------------- | 18 | - | - | - | 1 | 2 | - | - | |
| ---------------------GTGTGGGCCGGGGTTCGAGTCCCC----------------------------------------------------- | 24 | - | - | 2 | - | - | - | - | |
| GGCACTGGTGATGGCACGCCCGT--------------------------------------------------------------------------- | 23 | - | - | - | 1 | 1 | - | - | |
| GGCACTGGTGATGGCACGCCC----------------------------------------------------------------------------- | 21 | - | - | - | - | 2 | - | - | |
| ----------------------TGTGGGCCGGGGTTCGAGTCCCC----------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | |
| -------------------------GGGCCGGGGTTCGAGTCCCC----------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | |
| ----------ATGGCACGCCCGTGTGGGCCGG------------------------------------------------------------------ | 22 | - | 1 | - | - | - | - | - | |
| GGCACTGGTGATGGCACGCC------------------------------------------------------------------------------ | 20 | - | - | 1 | - | - | - | - | |
| --------------------CGTGTGGGCCGGGGTTCGAGTCCCC----------------------------------------------------- | 25 | - | - | 1 | - | - | - | - | |
| -----------TGGCACGCCCGTGTGGGCCGGGG---------------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| rat | GGCACTGGTGATGGCACGCCCGTGTGGGCCGGGGTTCGAGTCCCCgcagtaccctgcttccttcctgctctggctccaggcctctctttcctgtgccc | ||||||||
| ************************************************************************************************** | |||||||||
| rat | (((((.((.((.((...(((..((.((((((((((..(((.....((((....))))....)))..)))))))))))))))..)).)).)).))))). | 0.600 -38.90 | |||||||
| rat | chromosome:1:208456440:208456537:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH (57 loci)
block133105 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.465 | no | no | 0.50/0.67 | 18/24/0.53 | 3.8 0.0 1.0 0.0 0.0 | 2.9 0.0 1.0 0.0 0.0 | 11 1 2 1 2 | 0 0 0 0 0 | 5 1 2 1 1 | 0 0 0 0 0 | 9 27 31 37 25 | 1 -4 -12 -18 -3 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 9 18 18 25 55 | nd nd nd nd nd | 0.16 0.44 0.45 0.59 0.39 | 1 5 8 8 3 | 17 | 6 | -4 | -12 |
| reads | miRBase family seed | |||||||
| seed | -----------------CCUGUUC----------------------------------------------------------------- | 3 | novel | |||||
| seed | ---------------UCCCUGU------------------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------GCAGUGC----------------------------------- | 2 | novel | |||||
| seed | -------------------UGUUCUA--------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------GCUCCUC------------------------------------------------------------------------ | 2 | novel | |||||
| seed | --------------------------------------UCUUCUU-------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------CGCAUCU------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------UUCUAGA------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------GACAGCC------------------------------------------------------ | 1 | novel | |||||
| seed | --------------------------------GCCGCAU-------------------------------------------------- | 1 | novel | |||||
| seed | -----------CUCCUCC----------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | |||
| ----------------------------------------------TGCAGTGCCAGCCTCGTC------------------------- | 18 | - | - | - | - | - | 2 | |
| ------------------CTGTTCTAGAGACAGCCGC---------------------------------------------------- | 19 | - | - | 2 | - | - | - | |
| --------------CTCCCTGTTCTAGAGACAGCCGCA--------------------------------------------------- | 24 | 1 | - | - | - | - | - | |
| ---------------------------------CCGCATCTTCTTGTGCAG-------------------------------------- | 18 | 1 | - | - | - | - | - | |
| --------------------GTTCTAGAGACAGCCGCATC------------------------------------------------- | 20 | - | 1 | - | - | - | - | |
| -------------------------------AGCCGCATCTTCTTGTGCAGTG------------------------------------ | 22 | - | - | - | - | 1 | - | |
| ----------GCTCCTCCCTGTTCTAGAGAC---------------------------------------------------------- | 21 | 1 | - | - | - | - | - | |
| ----------------CCCTGTTCTAGAGACAGCC------------------------------------------------------ | 19 | - | - | - | 1 | - | - | |
| ----------------CCCTGTTCTAGAGACAGCCGC---------------------------------------------------- | 21 | - | - | - | 1 | - | - | |
| ----------------CCCTGTTCTAGAGACAGCCGCA--------------------------------------------------- | 22 | - | - | - | - | - | 1 | |
| ---------------------------AGACAGCCGCATCTTCTT-------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| -------------------------------------ATCTTCTTGTGCAGTGCCAGCC------------------------------ | 22 | - | - | 1 | - | - | - | |
| --------------CTCCCTGTTCTAGAGACAG-------------------------------------------------------- | 19 | - | - | - | 1 | - | - | |
| ---------TGCTCCTCCCTGTTCTAGAG------------------------------------------------------------ | 20 | 1 | - | - | - | - | - | |
| ---------TGCTCCTCCCTGTTCTAGAGA----------------------------------------------------------- | 21 | 1 | - | - | - | - | - | |
| rat | tcggctctcTGCTCCTCCCTGTTCTAGAGACAGCCGCATCTTCTTGTGCAGTGCCAGCCTCGTCtcatagacaagatggtgaaggtcgg | |||||||
| ***************************************************************************************** | ||||||||
| ......................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000058917 ENSRNOG00000038610 Q8K4T8_RAT | |||||||
| rat | .((((..((....((((..((.(((((((((.((.(((.((........)))))..))...))))).)))))).)).)).))..)))). | 0.470 -23.30 | ||||||
| rat | chromosome:11:70680871:70680959:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058917|ENSRNOG00000038610 ## ENSRNOG00000038610|protein_coding|Q8K4T8_RAT|Glyceraldehyde-3-phosphate-dehydrogenase (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8K4T8] |
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