other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH (57 loci)
sblock9090 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.26/0.52 | 18/24/0.56 | 0.0 0.0 0.0 0.0 0.0 2.9 | 0.0 0.0 0.0 0.0 0.0 0.7 | 1 4 2 1 1 7 | 0 0 0 0 0 0 | 1 2 1 1 1 2 | 0 0 0 0 0 0 | 0 9 18 39 46 29 | 36 24 18 -5 -11 6 | 5arm 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.21 0.41 0.47 0.38 0.45 0.37 | 3 7 7 5 5 4 | 18 | 3 | -16 | -19 |
| reads | miRBase family seed | ||||
| seed | ----------GCAGAAC------------------------------------------------------------------------------------------------------ | 5 | novel | ||
| seed | -------------------------------------------------------------------CCACUCA--------------------------------------------- | 4 | novel | ||
| seed | ------------------------------------------------------------------------CAGCCUA---------------------------------------- | 3 | novel | ||
| seed | -------------------AAUAACU--------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------GGCCAGU------------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------UGCAGAA------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------GAUGCUA----------------------------------------------------------------- | 1 | novel | ||
| seed | -ACUGGUC--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| ---------TGCAGAACATAATAACTGAACT---------------------------------------------------------------------------------------- | 22 | 1 | - | 4 | |
| ------------------------------------------------------------------TCCACTCAGCCTAAACATCAGGGT----------------------------- | 24 | - | 1 | 2 | |
| -----------------------------------------------------------------------TCAGCCTAAACATCAGGGT----------------------------- | 19 | - | - | 3 | |
| ------------------TAATAACTGAACTATGATG---------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| TACTGGTCTTGCAGAACAT---------------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------TGGCCAGTGATGCTACTTCTG----------------------------------------------------------- | 21 | - | - | 1 | |
| --------TTGCAGAACATAATAACT--------------------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| ------------------------------------------------------------------TCCACTCAGCCTAAACATC---------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------TGATGCTACTTCTGGTGGGT----------------------------------------------------- | 20 | - | - | 1 | |
| rat | tactggtctTGCAGAACATAATAACTGAACTATGATGgatggccagtgatgctacttctggtgggtTCCACTCAGCCTAAACATCAGGGTaccttgctttgagttcctgcaggtagcct | ||||
| *********************************************************************************************************************** | |||||
| rat | ....(((((((((((((.(((.......(((.(((((...(((.((((..(((((.....))).))..))))..)))....))))).)))........))).)))).))))))..))). | 0.600 -33.16 | |||
| rat | chromosome:4:164258144:164258262:1 | intergenic |
sblock9145 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.35/0.55 | 19/25/0.58 | 1.2 0.0 0.0 0.0 | 1.0 1.3 0.0 2.3 | 4 3 2 3 | 0 0 0 0 | 1 2 2 1 | 0 0 0 0 | 0 12 16 8 | 23 13 2 12 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.40 0.24 0.32 | 4 5 3 3 | 12 | 3 | -22 | -17 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------------------AGACAAA----------------------- | 3 | novel | ||
| seed | -------------AUCAGGA------------------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ----------------------------------------------------------------------------UGGAUGU--------------------------------- | 2 | novel | ||
| seed | -UCAUGAU------------------------------------------------------------------------------------------------------------ | 2 | miR-433 | ||
| seed | --CAUGAUU----------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----GAUUCUC-------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| TTCATGATTCTCTATCAGGA------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ---------------------------------------------------------------------------TTGGATGTTCTAGACAAACCACTCC---------------- | 25 | - | 1 | 1 | |
| ------------TATCAGGATCCATTGGTCTG------------------------------------------------------------------------------------ | 20 | 1 | - | - | |
| -------------------------------------------------------------------------------------TAGACAAACCACTCCTGCC------------ | 19 | - | - | 1 | |
| -------------------------------------------------------------------------------------TAGACAAACCACTCCTGCCCCTT-------- | 23 | - | - | 1 | |
| ------------TATCAGGATCCATTGGTCTGTC---------------------------------------------------------------------------------- | 22 | - | - | 1 | |
| -------------------------------------------------------------------------------------TAGACAAACCACTCCTGCCCCT--------- | 22 | - | - | 1 | |
| -TCATGATTCTCTATCAGGA------------------------------------------------------------------------------------------------ | 19 | - | - | 1 | |
| ----TGATTCTCTATCAGGATCCA-------------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| ------------TATCAGGATCCATTGGTCT------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | TTCATGATTCTCTATCAGGATCCATTGGTCTGTCcaggacacaaagaaacagaggaaatggggaaagaaaaaatcTTGGATGTTCTAGACAAACCACTCCTGCCCCTTaagagtct | ||||
| ******************************************************************************************************************** | |||||
| rat | .....((((((....(((((.....((((.((((.((((((..((((..........................))))...)))))).)))).)))).))))).......)))))). | 0.550 -26.07 | |||
| rat | chromosome:4:164281886:164282001:1 | intergenic |
sblock9409 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.289 | no | no | 0.36/0.57 | 19/25/0.33 | 0.0 0.0 4.3 | 2.0 0.0 4.0 | 6 1 3 | 0 0 0 | 2 1 1 | 0 0 0 | 23 51 0 | 12 -14 10 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.68 0.65 0.27 | 12 5 3 | 12 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------CCAUUGU------------------------------------------------------------------------- | 6 | novel | |
| seed | -----------------------------------------------------------------------------------GCCAGGA-------------- | 1 | novel | |
| seed | ----------------------CUCCAUU--------------------------------------------------------------------------- | 1 | miR-136 | |
| seed | ----------------------------------------------------AUCUUGC--------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------UGCCAGG--------------- | 1 | novel | |
| seed | --------------------CUCUCCA----------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------UAGUCUU--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------------TCCATTGTTTCTTAGACCCTTAAAG-------------------------------------------------------- | 25 | - | 4 | |
| -----------------------TCCATTGTTTCTTAGACCC-------------------------------------------------------------- | 19 | - | 2 | |
| ---------------------------------------------------------------------------------TTGCCAGGAGCTCTGATTCACCC | 23 | - | 1 | |
| ---------------------------------------------------TATCTTGCATCCCTTGTCTTTTG------------------------------ | 23 | - | 1 | |
| ---------------------TCTCCATTGTTTCTTAGACCCTTAA---------------------------------------------------------- | 25 | 1 | - | |
| ---------------------------------------------------------------------------TTAGTCTTGCCAGGAGCTCTGA------- | 22 | - | 1 | |
| -------------------TCTCTCCATTGTTTCTTAGACCCTT------------------------------------------------------------ | 25 | - | 1 | |
| ----------------------------------------------------------------------------------TGCCAGGAGCTCTGATTCAC-- | 20 | - | 1 | |
| rat | ggggagagctctggtttcctctcTCCATTGTTTCTTAGACCCTTAAAGccatatcttgcatcccttgtcttttgcttagtcttgccaggagctctgattcaccc | |||
| ******************************************************************************************************** | ||||
| rat | (((.(((((((((((.....................((((.....((((........(((.....))).....)))).)))).))))).))))))......))) | 0.430 -20.17 | ||
| rat | chromosome:5:114550618:114550721:-1 | intergenic |
sblock3840 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.50/0.67 | 18/25/0.50 | 0.0 0.7 1.2 0.7 | 0.0 3.7 2.2 0.9 | 1 3 4 9 | 0 0 0 0 | 1 2 3 3 | 0 0 0 0 | 1 18 31 18 | 31 6 1 11 | 5arm 5arm 3arm 3arm | 1 3 3 3 | nd nd nd nd | 0.28 0.38 0.30 0.40 | 2 4 3 4 | 20 | 6 | 9 | 11 |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------------------------------------------ACCAAGU----------------------------------- | 9 | novel | |||||
| seed | ---------------------------------------------------------------------GAGACCA-------------------------------------- | 3 | novel | |||||
| seed | -------------------AGAGAAA---------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------------GCAGACA---------------------------------------------- | 2 | novel | |||||
| seed | --CCAAGCA--------------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------AGAAACA-------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------GUGCAGA------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------------------------UGCAGAC----------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------GACCAAGTCCTCGCCAGTGCTCCCA------------------ | 25 | - | 1 | - | - | 5 | - | |
| -----------------------------------------------------------------------GACCAAGTCCTCGCCAGTGCTCCC------------------- | 24 | - | - | 1 | - | 2 | - | |
| ------------------------------------------------------------TGCAGACATGAGACCAAGTCCTC------------------------------- | 23 | - | - | - | 1 | 1 | - | |
| --------------------------------------------------------------------TGAGACCAAGTCCTCGCCAGTGCTC--------------------- | 25 | - | - | - | - | 2 | - | |
| ------------------CAGAGAAACACCTGGTCTGCCGG------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------GTGCAGACATGAGACCAAGTCCTC------------------------------- | 24 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TGTGCAGACATGAGACCAAGTC---------------------------------- | 22 | - | - | - | - | - | 1 | |
| -GCCAAGCAGCGGGTAACC----------------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| --------------------GAGAAACACCTGGTCTGCCGGTCT---------------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------TGAGACCAAGTCCTCGCCAGTG------------------------ | 22 | - | - | - | - | 1 | - | |
| ------------------CAGAGAAACACCTGGTCTG----------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| rat | agccaagcagcgggtaaccagagaaacacctggtctgccggtctgtccatttctgttgtgtgcagacaTGAGACCAAGTCCTCGCCAGTGCTCCCAtaagctgctgggaaggct | |||||||
| ****************************************************************************************************************** | ||||||||
| rat | ((((.(((((((((..((..(((....((.((((((....(((((..(((.......)))..)))))...)))))).)).)))....))...)))....)))))).....)))) | 0.520 -40.40 | ||||||
| rat | chromosome:13:37640984:37641097:1 | intergenic |
sblock6797 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.211 | no | no | 0.45/0.53 | 19/26/0.25 | 0.0 2.0 0.0 0.0 0.0 | 0.0 1.0 0.0 0.0 0.0 | 3 2 2 2 3 | 0 0 0 0 0 | 1 2 1 1 2 | 0 0 0 0 0 | 1 5 18 25 0 | 25 17 7 26 44 | 5arm 5arm 5arm 3arm 3arm | 1 1 5 5 5 | nd nd nd nd nd | 0.16 0.14 0.30 0.32 0.80 | 1 1 4 6 20 | 12 | 5 | 0 | -4 |
| reads | miRBase family seed | ||||||
| seed | --UGUCUGC------------------------------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | ---------------------------------------------------------------------------------------------GCAUUUU------------------ | 3 | novel | ||||
| seed | -------------------UUUCCUG-------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------------------------GGCAGGU------------------------------------ | 2 | novel | ||||
| seed | ------UGCAAGC--------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------AGCCUUG----------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------------------GGCATTTTCAATCTCTCTGGTACCAC | 26 | - | 2 | 1 | - | - | |
| -ATGTCTGCAAGCCTTGTCT-------------------------------------------------------------------------------------------------- | 19 | - | - | - | 3 | - | |
| ------------------CTTTCCTGGATCTTGCTTTG-------------------------------------------------------------------------------- | 20 | - | - | - | 2 | - | |
| --------------------------------------------------------------------------CGGCAGGTTTGAGGAAAAG------------------------- | 19 | 2 | - | - | - | - | |
| -----CTGCAAGCCTTGTCTTTCCTG-------------------------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| ---------AAGCCTTGTCTTTCCTGGA------------------------------------------------------------------------------------------ | 19 | - | - | - | - | 1 | |
| rat | gATGTCTGCAAGCCTTGTCTTTCCTGGATCTTGCTTTGcgactggcccccagtacgaacagaggctccggagagCGGCAGGTTTGAGGAAAAGGCATTTTCAATCTCTCTGGTACCAC | ||||||
| ********************************************************************************************************************** | |||||||
| rat | (((((((.((((((.((((.((((((((....(((((.(((((((...))))).))....)))))))))).))).))))))))))......))))))).................... | 0.410 -37.90 | |||||
| rat | chromosome:20:5533493:5533610:-1 | intergenic |
sblock7174 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.33/0.55 | 18/25/0.34 | 0.0 1.7 0.0 1.0 | 0.0 3.5 0.0 0.5 | 7 18 1 2 | 0 0 0 0 | 2 3 1 1 | 0 0 0 0 | 9 19 41 21 | 20 3 -11 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 1 2 2 2 | nd nd nd nd | 0.26 0.26 0.50 0.20 | 3 2 7 2 | 35 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------GACGCCU----------------------------------------------------------------------------- | 9 | novel | |||
| seed | ---------------------UGUGUAG------------------------------------------------------------------ | 8 | novel | |||
| seed | ----GCAGCUG----------------------------------------------------------------------------------- | 4 | novel | |||
| seed | ------------------------GUAGCCU--------------------------------------------------------------- | 4 | novel | |||
| seed | --------------------------AGCCUUG------------------------------------------------------------- | 3 | novel | |||
| seed | ----------------------------------------------------AACUAAA----------------------------------- | 1 | novel | |||
| seed | -AGUGCAG-------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------CCAUUAC--------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------CUAAAGG--------------------------------- | 1 | novel | |||
| seed | --------------------CUGUGUA------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------GUGUAGC----------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------UGUAGCC---------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S1 | T5S1 | |||
| ---------TGACGCCTTTTCTGTGTAG------------------------------------------------------------------ | 19 | - | 2 | - | 7 | |
| -----------------------TGTAGCCTTGAGGAAGTAG---------------------------------------------------- | 19 | - | - | - | 3 | |
| --------------------CTGTGTAGCCTTGAGGAAG------------------------------------------------------- | 19 | - | - | - | 3 | |
| --------------------CTGTGTAGCCTTGAGGAAGTAGCCA------------------------------------------------- | 25 | 1 | - | - | 2 | |
| ---TGCAGCTGACGCCTTTTCTG----------------------------------------------------------------------- | 20 | - | - | - | 2 | |
| -------------------------TAGCCTTGAGGAAGTAGCCA------------------------------------------------- | 20 | - | - | - | 2 | |
| -----------------------------------------------------ACTAAAGGCTGCCACCTCAG--------------------- | 20 | - | - | - | 1 | |
| ---TGCAGCTGACGCCTTTTCTGTGT-------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| GAGTGCAGCTGACGCCTTTT-------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------------GCCATTACCTTAACTAAA----------------------------------- | 18 | 1 | - | - | - | |
| ---------------------------------------------------TAACTAAAGGCTGCCACCTCA---------------------- | 21 | - | - | - | 1 | |
| -----------------------TGTAGCCTTGAGGAAGTAGCCA------------------------------------------------- | 22 | - | - | - | 1 | |
| -------------------TCTGTGTAGCCTTGAGGAAGT------------------------------------------------------ | 21 | - | - | - | 1 | |
| ---TGCAGCTGACGCCTTTTCT------------------------------------------------------------------------ | 19 | - | - | - | 1 | |
| --------------------CTGTGTAGCCTTGAGGAA-------------------------------------------------------- | 18 | - | - | - | 1 | |
| ----------------------GTGTAGCCTTGAGGAAGTAGCCA------------------------------------------------- | 23 | - | - | - | 1 | |
| ---------------------TGTGTAGCCTTGAGGAAGT------------------------------------------------------ | 19 | - | - | 1 | - | |
| --------------------CTGTGTAGCCTTGAGGAAGTAGC--------------------------------------------------- | 23 | - | - | - | 1 | |
| -------------------------TAGCCTTGAGGAAGTAGCC-------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | gagtgcagcTGACGCCTTTTCTGTGTAGCCTTGAGGAAGTAGccattaccttaactaaaggctgccacctcagcctcacctgctaaggaagggc | |||||
| ********************************************************************************************** | ||||||
| rat | .............((((((((((((..((..(((((..((((((.(((.......))).))))))..)))))))..)))......))))))))) | 0.570 -31.50 | ||||
| rat | chromosome:20:5550174:5550267:1 | intergenic |
novel_lenNOK_cloningHIGH_loopOverlap (56 loci)
block48981 [novel_lenNOK_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.170 | no | no | 0.57/0.61 | 18/21/0.04 | 0.0 | 0.0 | 68 | 0 | 7 | 0 | 14 | -1 | 3arm_loop | 1 | nd | 0.11 | 2 | 83 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------GCCUCAG------------------------ | 83 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------GGCCTCAGGTACTGTCGT-------------- | 18 | 1 | 1 | 1 | 21 | 47 | 1 | 3 | |
| ----------------------------------------GGCCTCAGGTACTGTCGTT------------- | 19 | - | - | - | 3 | 2 | - | - | |
| ----------------------------------------GGCCTCAGGTACTGTCGTTG------------ | 20 | - | - | - | - | 2 | - | - | |
| ----------------------------------------GGCCTCAGGTACTGTCGTTGA----------- | 21 | - | - | - | - | 1 | - | - | |
| rat | ggagagaaaaaggcaggcagggccgtggttgaggtgagagGGCCTCAGGTACTGTCGTtgagtggtattccc | ||||||||
| ************************************************************************ | |||||||||
| rat | ((((.......(((.(((((..((.....((((((......))))))))..))))))))........)))). | 0.970 -21.16 | |||||||
| rat | chromosome:10:103228360:103228431:-1 | intergenic |
block95925 [novel_lenNOK_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.55/0.61 | 18/20/0.01 | 0.0 | 0.2 | 64 | 0 | 10 | 0 | 12 | -1 | 5arm_loop | 1 | nd | 0.17 | 1 | 118 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------------GCCUGUC-------------------------------------------------------------- | 117 | novel | |||||||||
| seed | --------------CCUGUCU------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------CGCCTGTCTGAGCTGAGTA--------------------------------------------------- | 19 | 3 | 2 | 10 | 2 | 8 | 15 | 2 | 4 | 6 | 27 | |
| ------------CGCCTGTCTGAGCTGAGT---------------------------------------------------- | 18 | 4 | 3 | 3 | - | 2 | 12 | - | 2 | 4 | 7 | |
| ------------CGCCTGTCTGAGCTGAGTAT-------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------GCCTGTCTGAGCTGAGTA--------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | ctaagatagagaCGCCTGTCTGAGCTGAGTAtctgttggccagctggagactgaacacacaggttgtagaatttatcctaga | |||||||||||
| ********************************************************************************** | ||||||||||||
| -------------------------------------------------------------------------------------------- | ENSRNOT00000028109 ENSRNOG00000020701 Brca1 | |||||||||||
| rat | (((.((((((.((((((((.(((((((.((........)))))))..........)).)))))).))....)))))).))). | 0.940 -21.30 | ||||||||||
| rat | chromosome:10:90550913:90550994:1 | Opposite_strand|Intronic_coding|ENSRNOT00000028109|ENSRNOG00000020701 ## ENSRNOG00000020701|protein_coding|Brca1|Breast cancer type 1 susceptibility protein homolog. [Source:UniProtKB/Swiss-Prot;Acc:O54952] |
block102984 [novel_lenNOK_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.077 | no | no | 0.61/0.63 | 18/19/0.00 | 0.0 | 0.0 | 410 | 0 | 9 | 0 | 14 | -2 | 3arm_loop | 1 | nd | 0.28 | 3 | 490 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | --------------------------------------CCAGUGU------------------------ | 490 | miR-199a | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------CCCAGTGTTCAGACTGCC-------------- | 18 | 4 | 6 | 16 | 55 | 25 | 70 | 127 | 62 | 96 | |
| -------------------------------------CCCAGTGTTCAGACTGCCC------------- | 19 | - | - | - | 7 | 3 | 2 | 8 | 4 | 5 | |
| rat | tggcctctttggggaaagtaatcaatgctgagcctccCCCAGTGTTCAGACTGCCctataagggctcaa | ||||||||||
| ********************************************************************* | |||||||||||
| rat | .((((.((((((((..(((....(((((((.........)))))))...))).))))).)))))))... | 0.970 -20.50 | |||||||||
| rat | chromosome:10:104120810:104120878:1 | intergenic |
block119733 [novel_lenNOK_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.206 | no | no | 0.42/0.44 | 18/19/0.00 | 0.0 | 0.1 | 77 | 0 | 10 | 0 | 25 | -3 | 3arm_loop | 1 | nd | 0.16 | 2 | 87 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------GGCUCAG------------------------------------ | 86 | miR-24 | |||||||||
| seed | ------------------------------------------------GCUCAGU----------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------TGGCTCAGTTCATACTCT-------------------------- | 18 | 14 | 9 | 8 | 1 | 6 | 7 | 5 | 9 | 6 | 8 | |
| ----------------------------------------------TGGCTCAGTTCATACTCTT------------------------- | 19 | 2 | 1 | 2 | 1 | - | - | - | 5 | 1 | 1 | |
| -----------------------------------------------GGCTCAGTTCATACTCTT------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | caggacgcctagacctacacagtaagggtgggtggagctggagaggTGGCTCAGTTCATACTCTTcttgacgtaaacctaggttgactgc | |||||||||||
| ****************************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002231 ENSRNOG00000001632 NP_001100576.1 | |||||||||||
| rat | (((...((((((...(((....((((((.((((((((((.(((......)))))))).)))))))))))..)))...))))))...))). | 0.990 -28.20 | ||||||||||
| rat | chromosome:11:36349996:36350085:-1 | Same_strand|Intronic_coding|ENSRNOT00000002231|ENSRNOG00000001632 ## ENSRNOG00000001632|protein_coding|NP_001100576.1|bromodomain and WD repeat domain containing 1 [Source:RefSeq_peptide;Acc:NP_001100576] |
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