other hairpins
novel_lenNOK_cloningHIGH_loopOverlap (56 loci)
block1596098 [novel_lenNOK_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.48/0.56 | 18/25/0.56 | 0.0 | 1.3 | 65 | 0 | 9 | 0 | 37 | -4 | 3arm_loop | 1 | nd | 0.19 | 3 | 111 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------GGGGGUU-------------------------------------------------- | 111 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TGGGGGTTTTTGGGGAGTTTT------------------------------------- | 21 | 9 | 4 | 25 | 1 | 3 | 2 | 2 | 1 | 2 | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGAGT---------------------------------------- | 18 | 8 | 1 | 12 | 1 | - | - | 2 | - | - | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGAGTT--------------------------------------- | 19 | 5 | 3 | 11 | - | - | 2 | 1 | - | 2 | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGAGTTT-------------------------------------- | 20 | 3 | 2 | 5 | - | - | - | - | - | - | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGAGTTTTG------------------------------------ | 22 | 1 | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGAGTTTTGGGG--------------------------------- | 25 | - | - | - | - | - | 1 | - | - | - | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGAGTTTTGG----------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | |
| rat | tgacatctaaataagatggtgaaaaaaaaaatctgtgagattcaactaaatctaactcTGGGGGTTTTTGGGGAGTTTTgggggggttttttggggggtttgttttgttttttgtt | ||||||||||
| ******************************************************************************************************************** | |||||||||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000056174 ENSRNOG00000037198 Usp18 | ||||||||||
| rat | .((((...(((((((((((....((((((..(((.((((((((..(((((...((((.....))))))))).)))))))).)))..)))))).......)))))))))))..)))) | 0.850 -23.70 | |||||||||
| rat | chromosome:4:157694153:157694268:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000056174|ENSRNOG00000037198 ## ENSRNOG00000037198|protein_coding|Usp18|ubiquitin specific peptidase 18 [Source:RefSeq_peptide;Acc:NP_001014080] ## {Repeats: dust 157694186 157694209 0 class=dust,trf 19 42 0 class=trf,trf 25 33 0 class=trf} |
block1848528 [novel_lenNOK_cloningHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.47/0.62 | 19/24/0.35 | 0.9 0.0 0.0 | 0.0 0.0 0.0 | 22 71 1 | 0 0 0 | 9 5 1 | 0 0 0 | 34 20 9 | -6 12 22 | 3arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.21 0.25 | 2 2 4 | 133 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | --------------------------------------------------------------------------------CCCAUCC------------------------------- | 83 | novel | ||||||||
| seed | -----------------------------------------------------------------AGCAGAC---------------------------------------------- | 27 | novel | ||||||||
| seed | --------------------------------------------------------------AGUAGCA------------------------------------------------- | 9 | novel | ||||||||
| seed | ------------------------------------------------------------------GCAGACA--------------------------------------------- | 6 | novel | ||||||||
| seed | -------------------------------------------------------------GAGUAGC-------------------------------------------------- | 2 | novel | ||||||||
| seed | --------------------------------------------------------------------------ACCCAUC------------------------------------- | 2 | novel | ||||||||
| seed | ------------------------------------------------------------------------------------------GUGCUCA--------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------------------------------------AUCCCAU--------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------------------CAGACAU-------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------------------GGAGUAG--------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------------TCCCATCCTGTGTGCTCAG-------------------- | 19 | 3 | 1 | - | 1 | - | 1 | - | 71 | - | |
| ----------------------------------------------------------------TAGCAGACATACCCATCCCA---------------------------------- | 20 | 1 | 2 | 1 | 1 | 1 | 3 | 2 | 13 | 1 | |
| -------------------------------------------------------------GAGTAGCAGACATACCCATCCCA---------------------------------- | 23 | - | - | - | - | - | - | 1 | 5 | - | |
| -----------------------------------------------------------------AGCAGACATACCCATCCCA---------------------------------- | 19 | 1 | 1 | - | - | - | - | - | 4 | - | |
| -------------------------------------------------------------------------------TCCCATCCTGTGTGCTCAGGG------------------ | 21 | - | - | - | - | - | - | - | 4 | - | |
| ------------------------------------------------------------GGAGTAGCAGACATACCCA--------------------------------------- | 19 | - | 2 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------TACCCATCCCATCCTGTGTG------------------------- | 20 | - | - | - | - | - | - | - | 2 | - | |
| -----------------------------------------------------------TGGAGTAGCAGACATACCCATCCC----------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------GAGTAGCAGACATACCCAT-------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------------TGTGCTCAGGGGAACTTGGT--------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------TCCCATCCTGTGTGCTCAGGGGA---------------- | 23 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------CATCCCATCCTGTGTGCTCAG-------------------- | 21 | - | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------GCAGACATACCCATCCCATC-------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TAGCAGACATACCCATCCCATCCT------------------------------ | 24 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------TAGCAGACATACCCATCCCATCC------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------GAGTAGCAGACATACCCATCCC----------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------GAGTAGCAGACATACCCATC------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------TCCCATCCTGTGTGCTCAGGGGAA--------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| rat | ggactttcagaaagtgacttcatcccctcactgagggctggggattggtgtgggtgtggtggagtagcagacatacccaTCCCATCCTGTGTGCTCAGgggaacttggtttatggtcc | ||||||||||
| ********************************************************************************************************************** | |||||||||||
| rat | (((((......((((.......(((((....((((.((..((((.(((..((((((((.((......))..))))))))..)))))))..)).))))))))))))).......))))) | 0.720 -46.43 | |||||||||
| rat | chromosome:5:79247353:79247470:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_5varHIGH (54 loci)
sblock10003 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.803 | no | no | 0.65/0.85 | 18/20/0.50 | 0.0 1.3 | 0.0 1.3 | 1 3 | 0 0 | 1 2 | 0 0 | 22 23 | 1 8 | 5arm 3arm | 1 1 | nd nd | 0.30 0.47 | 2 5 | 4 | 3 | 4 | 1 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------CCGGAGC----------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------AGCCGGA------------------------------------- | 1 | novel | ||
| seed | -----------------------CGGCCCC---------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S2 | T5S1 | |||
| ---------------------------------------------------------GCCGGAGCCGTAGCCGCCGC----------------------- | 20 | - | 1 | - | |
| ----------------------CCGGCCCCTCCTTCTTCTCA---------------------------------------------------------- | 20 | 1 | - | - | |
| -------------------------------------------------------GAGCCGGAGCCGTAGCCGC-------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------GCCGGAGCCGTAGCCGCC------------------------- | 18 | - | 1 | - | |
| rat | ctgcactctctgctgcccgccgCCGGCCCCTCCTTCTTCTCAttccagtgccaccGAGCCGGAGCCGTAGCCGCCGCtgccgcagcaacctcagccgcgg | ||||
| **************************************************************************************************** | |||||
| rat | ((((.((...((((((..((.((((((..((((..(((..(((....))).....)))..)))).....))))..)).)).)))))).....))..)))) | 0.590 -26.30 | |||
| rat | chromosome:6:75207297:75207396:-1 | intergenic |
sblock10372 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.486 | no | no | 0.42/0.58 | 18/24/0.43 | 0.5 4.0 0.0 0.0 | 0.5 1.5 0.0 2.0 | 2 2 1 2 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 7 15 12 0 | 29 14 23 35 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.32 0.23 0.11 | 5 2 2 1 | 7 | 3 | 1 | 4 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------------------------------GGACUUU-------------- | 2 | novel | ||
| seed | ----------------GGAAGGC---------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------AGGACCU----------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------UAGGACC------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------AAGCACC-------------------------- | 1 | novel | ||
| seed | ------------------------ACCCAAG-------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| -----------------------------------------------------------------------------------------------TGGACTTTGGCTTAGACG---- | 18 | 1 | - | - | |
| -----------------------------------------------------------------------------------TAAGCACCTCCCTGGACTTTGG------------ | 22 | - | 1 | - | |
| --------TAGGACCTGGAAGGCTACC------------------------------------------------------------------------------------------ | 19 | - | - | 1 | |
| -------GTAGGACCTGGAAGGCTAC------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ---------------TGGAAGGCTACCCAAGATAGTGTG------------------------------------------------------------------------------ | 24 | - | - | 1 | |
| -----------------------------------------------------------------------------------------------TGGACTTTGGCTTAGACGTTCA | 22 | - | - | 1 | |
| -----------------------TACCCAAGATAGTGTGCAA--------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | tgggcgtGTAGGACCTGGAAGGCTACCCAAGATAGTGTGCAAgacagaagcaggctttgtggctgcgcttttgacacctggctTAAGCACCTCCCTGGACTTTGGCTTAGACGTTCA | ||||
| ********************************************************************************************************************* | |||||
| rat | .((((((.((((.((..((((.....((.((..((.(((((((.(((((((.((((....))))..)))))))........)))..))))))..)))).)))))))))).)))))). | 0.520 -34.90 | |||
| rat | chromosome:6:122584598:122584714:1 | intergenic |
sblock10759 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.169 | no | no | 0.43/0.48 | 19/26/0.56 | 0.0 1.1 | 2.0 0.1 | 2 7 | 0 0 | 1 3 | 0 0 | 6 13 | 26 12 | 5arm 3arm | 10 10 | nd nd | 0.36 0.19 | 5 2 | 9 | 3 | -4 | -4 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------UUGGUUU--------------------------- | 4 | novel | ||
| seed | -------AGUACUC--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------------GGUUUUC------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------UCUCUUG------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------CTTGGTTTTCATATGACGGGG-------------- | 21 | - | 3 | 1 | |
| --------------------------------------------------------------------------------TGGTTTTCATATGACGGGG-------------- | 19 | 1 | 1 | - | |
| ------TAGTACTCATCAGGTGACACA-------------------------------------------------------------------------------------- | 21 | - | 1 | - | |
| --------------------------------------------------------------------------TTCTCTTGGTTTTCATATGACGGGGG------------- | 26 | - | 1 | - | |
| ------TAGTACTCATCAGGTGACACATGAG---------------------------------------------------------------------------------- | 25 | - | 1 | - | |
| rat | tgcaatTAGTACTCATCAGGTGACACATGAGccgatgcccagggacatccctctctggactacagaggctgtccTTCTCTTGGTTTTCATATGACGGGGGcttcatttagcac | ||||
| ***************************************************************************************************************** | |||||
| rat | (((((..((..(((.(((.((((.....(((((((.....(((((((....((((((.....)))))).)))))))...))))))))))).))).)))..))....)).))). | 0.920 -32.60 | |||
| rat | chromosome:7:19401264:19401376:-1 | intergenic |
sblock10769 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.450 | no | no | 0.61/0.67 | 18/24/0.60 | 1.3 0.0 0.0 | 1.3 0.0 0.0 | 3 1 1 | 0 0 0 | 3 1 1 | 0 0 0 | 0 10 9 | 19 14 13 | 5arm 5arm 3arm | 2 2 2 | nd nd nd | 0.30 0.44 0.42 | 2 2 3 | 5 | 4 | -1 | 3 |
| reads | miRBase family seed | |||||
| seed | ---CUGAGUC-------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------CUCGGUG------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------------------------GGCCACC------------------------- | 1 | novel | |||
| seed | -UGCUGAG---------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T3S2 | T5S1 | |||
| ----------TCTCGGTGCCTGTGACCC-------------------------------------------------------------------- | 18 | - | - | 1 | - | |
| --GCTGAGTCTCTCGGTGCCTG-------------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| CTGCTGAGTCTCTCGGTGCCTGT------------------------------------------------------------------------- | 23 | - | 1 | - | - | |
| ---------------------------------------------------------------CGGCCACCTAGTCTTCCTCGAGTC--------- | 24 | 1 | - | - | - | |
| --GCTGAGTCTCTCGGTGCC---------------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | CTGCTGAGTCTCTCGGTGCCTGTGACCCtgggtgagggggctatacacagagccccgcgacccCGGCCACCTAGTCTTCCTCGAGTCtctgcgcgg | |||||
| ************************************************************************************************ | ||||||
| rat | ((((.(((.(((..((.((..(((..((.((((...((((((........))))))...)))).)).)))...))...))..))).)))...)))) | 0.950 -35.50 | ||||
| rat | chromosome:7:21314178:21314273:-1 | intergenic |
sblock11248 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.42/0.60 | 19/24/0.33 | 1.2 0.0 0.0 | 2.6 0.0 0.0 | 5 1 3 | 0 0 0 | 2 1 1 | 0 0 0 | 17 24 19 | 3 2 7 | 5arm 3arm 3arm | 5 5 5 | nd nd nd | 0.30 0.32 0.47 | 2 2 6 | 9 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------ACCCAUC---------------------------------------------------------------------- | 4 | novel | |
| seed | ----------------------------------------------------------GAGCUCU------------------------------ | 3 | novel | |
| seed | ------------------------CUGCCUC---------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------AGUGUGA----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ---------------------------------------------------------TGAGCTCTGGAGCATAAAA------------------- | 19 | - | 3 | |
| -----------------TACCCATCTGCCTCCATGC----------------------------------------------------------- | 19 | - | 2 | |
| -----------------------TCTGCCTCCATGCCATCCTG---------------------------------------------------- | 20 | 1 | - | |
| -----------------TACCCATCTGCCTCCATGCC---------------------------------------------------------- | 20 | - | 1 | |
| -----------------TACCCATCTGCCTCCATGCCATCC------------------------------------------------------ | 24 | - | 1 | |
| ----------------------------------------------------TAGTGTGAGCTCTGGAGCA------------------------ | 19 | - | 1 | |
| rat | gtagcttgcccacaatcTACCCATCTGCCTCCATGCCATCCTGtggctctccTAGTGTGAGCTCTGGAGCATAAAAtccttggtcccatgctgcc | |||
| *********************************************************************************************** | ||||
| rat | (((((.((....(((..........((.(((((.((((..(((.((....)))))..)).))..)))))))........)))....)).))))). | 0.580 -21.27 | ||
| rat | chromosome:7:19449388:19449482:1 | intergenic |
sblock11713 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.705 | no | no | 0.41/0.53 | 19/23/0.57 | 0.0 2.0 | 0.0 1.8 | 1 6 | 0 0 | 1 2 | 0 0 | 9 15 | 14 9 | 5arm 3arm | 1 1 | nd nd | 0.26 0.39 | 2 3 | 7 | 2 | -12 | -11 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------ACUGUCU------------------------------ | 4 | novel | |
| seed | -------------------------------------------------------CCUACUG--------------------------------- | 2 | novel | |
| seed | ----------GGAAGCA------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------TACTGTCTTGTTGCCTGAA------------------- | 19 | - | 2 | |
| ------------------------------------------------------TCCTACTGTCTTGTTGCCTGA-------------------- | 21 | 2 | - | |
| ---------------------------------------------------------TACTGTCTTGTTGCCTGAATTG---------------- | 22 | - | 1 | |
| ---------------------------------------------------------TACTGTCTTGTTGCCTGAATTGG--------------- | 23 | - | 1 | |
| ---------TGGAAGCACATTTGGTGGC------------------------------------------------------------------- | 19 | - | 1 | |
| rat | caggtagacTGGAAGCACATTTGGTGGCaactggctgtgccctgtgggctggcaTCCTACTGTCTTGTTGCCTGAATTGGtcctacactctctgc | |||
| *********************************************************************************************** | ||||
| rat | (((..((...(((..((.((((((..(((((.((.(((((((...))))..))).))....))..)))..)).)))))).)))....))..))). | 0.430 -24.90 | ||
| rat | chromosome:8:57748053:57748147:-1 | intergenic |
sblock11740 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.045 | no | no | 0.68/0.81 | 19/21/0.50 | 1.3 0.0 | 0.7 0.3 | 3 3 | 0 0 | 1 3 | 0 0 | 8 1 | 11 20 | 5arm 3arm | 1 1 | nd nd | 0.19 0.26 | 2 3 | 6 | 3 | 11 | 10 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------GCGGCCU------------- | 3 | novel | ||
| seed | ---------CGGGCCG--------------------------------------------------------------------------- | 2 | novel | ||
| seed | -------------CCGCGAG----------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T3S1 | |||
| ----------------------------------------------------------------------TGCGGCCTGCGTTCGGCTA-- | 19 | 1 | 1 | - | |
| --------GCGGGCCGCGAGCGTGGAGCA-------------------------------------------------------------- | 21 | - | 2 | - | |
| ----------------------------------------------------------------------TGCGGCCTGCGTTCGGCTAG- | 20 | - | - | 1 | |
| ------------GCCGCGAGCGTGGAGCATC------------------------------------------------------------ | 19 | - | 1 | - | |
| rat | gcgcaagcGCGGGCCGCGAGCGTGGAGCATCtcgagacagccgggctgcgggctgcggagcgtgcgggttTGCGGCCTGCGTTCGGCTAGc | ||||
| ******************************************************************************************* | |||||
| rat | ..((.((((((((((((((((.((..((.((.((...(((((........)))))))))))...)).))))))))))))))))..)).... | 0.880 -47.40 | |||
| rat | chromosome:8:69264480:69264570:-1 | intergenic |
sblock11796 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.279 | no | no | 0.32/0.57 | 19/25/0.43 | 0.0 2.0 0.0 1.5 | 0.5 0.5 0.0 4.5 | 2 2 1 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 0 8 25 15 | 21 13 0 4 | 5arm 5arm 5arm 3arm | 1 1 1 1 | nd nd nd nd | 0.22 0.23 0.32 0.36 | 3 3 5 3 | 7 | 1 | 4 | 6 |
| reads | miRBase family seed | ||
| seed | -CAGCAUC------------------------------------------------------------------------------------------------ | 2 | novel |
| seed | --------------------------------------------------------------UUUAGGG----------------------------------- | 1 | novel |
| seed | -------------GCUUGCC------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------GUCAUAG----------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------AGGGUGG-------------------------------- | 1 | novel |
| seed | ---------GUCUGCU---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------TGTCATAGAAAAAAGAGCT------------------------------------------------------------ | 19 | 1 | |
| -------------------------------------------------------------TTTTAGGGTGGCATTTTGA------------------------ | 19 | 1 | |
| ----------------------------------------------------------------TAGGGTGGCATTTTGAAGCAAGAAG--------------- | 25 | 1 | |
| --------TGTCTGCTTGCCTGCATTGTCA-------------------------------------------------------------------------- | 22 | 1 | |
| TCAGCATCTGTCTGCTTGCCTG---------------------------------------------------------------------------------- | 22 | 1 | |
| ------------TGCTTGCCTGCATTGTCAT------------------------------------------------------------------------- | 19 | 1 | |
| TCAGCATCTGTCTGCTTGCCTGC--------------------------------------------------------------------------------- | 23 | 1 | |
| rat | TCAGCATCTGTCTGCTTGCCTGCATTGTCATAGAAAAAAGAGCTaagcaaggaaaggggttTTTTAGGGTGGCATTTTGAAGCAAGAAGataaaggattatctg | ||
| ******************************************************************************************************** | |||
| rat | .(((.((((((((.(((((...((.((((((.....((((((((.............))))))))...))))))...))..))))).))))...))))...))) | 0.950 -22.52 |
| rat | chromosome:8:72071065:72071168:-1 | intergenic |
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