other hairpins
novel_lenNOK_multiarm_DicerNOK_5varHIGH (54 loci)
sblock8076 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.36/0.53 | 18/25/0.33 | 0.0 0.0 1.8 | 0.0 0.0 5.8 | 1 1 4 | 0 0 0 | 1 1 2 | 0 0 0 | 10 21 5 | 10 -2 2 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.21 0.25 0.32 | 1 3 4 | 6 | 2 | 4 | 4 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------UGGAGAG----------------------------- | 3 | novel | |
| seed | ----------------------GGCUGAA----------------------------------------------------- | 1 | novel | |
| seed | -----------GCUGGGU---------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------AGCAUUU---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------TTGGAGAGAGCATTTCTG------------------- | 18 | 1 | - | |
| ---------------------------------------------TTGGAGAGAGCATTTCTGCT----------------- | 20 | - | 1 | |
| ---------------------------------------------TTGGAGAGAGCATTTCTGCTATAGA------------ | 25 | 1 | - | |
| ---------------------TGGCTGAATCCTACCAGAGA----------------------------------------- | 20 | - | 1 | |
| ----------------------------------------------------GAGCATTTCTGCTATAGATTGAGAA----- | 25 | - | 1 | |
| ----------TGCTGGGTCAATGGCTGAA----------------------------------------------------- | 19 | - | 1 | |
| rat | cacttggtaaTGCTGGGTCAATGGCTGAATCCTACCAGAGAcctcTTGGAGAGAGCATTTCTGCTATAGATTGAGAAtagtg | |||
| ********************************************************************************** | ||||
| rat | ((((........((.((((.(((((.(((((((.(((((....))).)))).))....))).))))).)))).))...)))) | 0.850 -18.30 | ||
| rat | chromosome:3:76974624:76974705:1 | intergenic |
sblock8224 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.47/0.50 | 18/20/0.44 | 0.0 4.6 0.0 | 0.0 3.8 0.0 | 2 5 2 | 0 0 0 | 2 3 2 | 0 0 0 | 0 7 0 | 19 0 14 | 5arm 3arm 3arm | 2 2 2 | nd nd nd | 0.47 0.21 0.32 | 5 2 3 | 9 | 5 | -16 | -18 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------GCCUCAG---------------------- | 2 | novel | ||||
| seed | -CCCACUG-------------------------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------CAAGUAG------------ | 2 | novel | ||||
| seed | --------------------------------------------------UCAGCAU------------------- | 1 | novel | ||||
| seed | -------------------------------------------UGUUGCC-------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------CAGCAUC------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T5S1 | T5S2 | |||
| TCCCACTGCTGGCTTTTTT--------------------------------------------------------- | 19 | - | - | - | 1 | 1 | |
| --------------------------------------------------------TCAAGTAGGTTGCCGTGACA | 20 | 1 | - | - | 1 | - | |
| -------------------------------------------------CTCAGCATCAAGTAGGTTG-------- | 19 | - | - | 1 | - | - | |
| ----------------------------------------------TGCCTCAGCATCAAGTAG------------ | 18 | - | 1 | - | - | - | |
| --------------------------------------------------TCAGCATCAAGTAGGTTGC------- | 19 | - | - | - | 1 | - | |
| ----------------------------------------------TGCCTCAGCATCAAGTAGGT---------- | 20 | - | - | - | 1 | - | |
| ------------------------------------------CTGTTGCCTCAGCATCAAGT-------------- | 20 | - | - | - | 1 | - | |
| rat | TCCCACTGCTGGCTTTTTTattgagttgtcttcccagggtgaCTGTTGCCTCAGCATCAAGTAGGTTGCCGTGACA | ||||||
| **************************************************************************** | |||||||
| rat | ...(((.((.(((((.....((((((((........((....)).......)))).))))..))))))).)))... | 0.750 -17.16 | |||||
| rat | chromosome:3:141756252:141756327:1 | intergenic |
sblock8742 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.144 | no | no | 0.40/0.60 | 19/25/0.62 | 2.0 0.0 | 0.0 0.0 | 3 5 | 0 0 | 2 1 | 0 0 | 22 26 | 7 8 | 5arm 3arm | 1 1 | nd nd | 0.26 0.25 | 3 2 | 8 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------GAGUCUG-------------------------------------- | 5 | novel | |
| seed | -----------------------GCAUCUU----------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------UGCAGAA----------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------------------------------------------TGAGTCTGTTGCTTTTCTTG-------------------------- | 20 | - | 5 | |
| ----------------------GGCATCTTGCAGAAGCAACCGGCAG------------------------------------------------------------------ | 25 | 2 | - | |
| ----------------------------TTGCAGAAGCAACCGGCAG------------------------------------------------------------------ | 19 | - | 1 | |
| rat | tggaccactgggggagctcgcaGGCATCTTGCAGAAGCAACCGGCAGcttgtatttgcagtgcggccTGAGTCTGTTGCTTTTCTTGcctgaggtaactccacacctctgtct | |||
| ***************************************************************************************************************** | ||||
| rat | .((((....((.((((.((.((((((......(((((((((.(((.((.(((((.....)))))))....))).)))))))))..)))))).))...))))...))...)))) | 0.880 -38.00 | ||
| rat | chromosome:4:164238997:164239109:-1 | intergenic |
sblock9277 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.40/0.60 | 19/26/0.29 | 0.0 1.5 | 0.0 2.8 | 1 6 | 0 0 | 1 1 | 0 0 | 0 15 | 13 0 | 5arm 3arm | 1 3 | nd nd | 0.25 0.31 | 1 3 | 7 | 2 | -17 | -13 |
| reads | miRBase family seed | |||
| seed | --------------------------------------GGGUCAC--------------------------------- | 4 | novel | |
| seed | -GGAGUUG---------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------CACAUUC----------------------------- | 1 | novel | |
| seed | -------------------------------------------ACAUUCA---------------------------- | 1 | miR-181a/181b/181c/181d | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -------------------------------------TGGGTCACATTCAGGAAAA---------------------- | 19 | - | 3 | |
| TGGAGTTGGGCAGGACAGTG---------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------TGGGTCACATTCAGGAAAACTGAGTC--------------- | 26 | - | 1 | |
| ------------------------------------------CACATTCAGGAAAACTGAG----------------- | 19 | - | 1 | |
| -----------------------------------------TCACATTCAGGAAAACTGAG----------------- | 20 | - | 1 | |
| rat | TGGAGTTGGGCAGGACAGTGcttgggtggctcacggaTGGGTCACATTCAGGAAAACTGAGTCcgagaggtacaagtc | |||
| ****************************************************************************** | ||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000047859 ENSRNOG00000024953 LOC678820 | |||
| rat | ..((.(((.((.(((((((.((((.((((((((....))))))))...))))...)))..)))).....)).))).)) | 0.720 -24.80 | ||
| rat | chromosome:5:25427391:25427468:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000041129|ENSRNOG00000024953 ## Opposite_strand|Intronic_coding|ENSRNOT00000047859|ENSRNOG00000024953 ## ENSRNOG00000024953|protein_coding|LOC678820| ## {Repeats: trf 31 34 0 class=trf} |
sblock9420 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.718 | no | no | 0.32/0.42 | 19/25/0.43 | 0.0 0.0 0.0 2.0 | 0.0 0.0 0.0 1.5 | 1 1 3 2 | 0 0 0 0 | 1 1 2 2 | 0 0 0 0 | 0 11 19 25 | 29 23 16 1 | 5arm 5arm 5arm 3arm | 1 1 1 1 | nd nd nd nd | 0.52 0.50 0.26 0.30 | 6 5 2 3 | 7 | 3 | -14 | -12 |
| reads | miRBase family seed | ||||
| seed | --------------------GGGUUAU----------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -GUUUAAA------------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------------------ACACACA----------------------------------------- | 1 | novel | ||
| seed | ------------ACUAUGU------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------ACAAAGA------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------TGGGTTATGACTTGGAGAT------------------------------------------------------------------------------ | 19 | 1 | - | 2 | |
| TGTTTAAAAGGTACTATGTTGGGTT------------------------------------------------------------------------------------------- | 25 | - | - | 1 | |
| -----------------------------------------------------------------------CACAAAGATTGTCTTGTTAG------------------------- | 20 | - | - | 1 | |
| -------------------------------------------------------------------GACACACAAAGATTGTCTTGT---------------------------- | 21 | - | 1 | - | |
| -----------TACTATGTTGGGTTATGACT------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| rat | TGTTTAAAAGGTACTATGTTGGGTTATGACTTGGAGATatcatcactggtttcccttcactttattgGACACACAAAGATTGTCTTGTTAGcattccttacctctctcctctagca | ||||
| ******************************************************************************************************************** | |||||
| rat | .(((....(((......((.(((..(((.((..((((((..(((..((((.(((............))).)).))..)))))))))...))))).))).))......)))..))). | 0.580 -18.20 | |||
| rat | chromosome:5:114553860:114553975:-1 | intergenic |
sblock9875 [novel_lenNOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.52/0.67 | 18/22/0.67 | 0.0 1.5 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 9 16 | 11 7 | 5arm 3arm | 5 6 | nd nd | 0.19 0.23 | 2 3 | 3 | 3 | -2 | -4 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------UACCGUG------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------------------CGUGGUG--------------------------- | 1 | novel | ||
| seed | ----------AAUGUGA-------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------------------------------GTACCGTGGTGATGTGGTCCCC---------------- | 22 | - | - | 1 | |
| --------------------------------------------------------CCGTGGTGATGTGGTCCC----------------- | 18 | - | 1 | - | |
| ---------AAATGTGACCCTCGCCATGGT------------------------------------------------------------- | 21 | 1 | - | - | |
| rat | cagatggtgAAATGTGACCCTCGCCATGGTaaatacatggcttgctgcctgctGTACCGTGGTGATGTGGTCCCCaaggatgtcaatgctg | ||||
| ******************************************************************************************* | |||||
| rat | (((....(((..((.((((.(((((((((((....((.(((.....)))))...)))))))))))...))))..))......)))...))) | 0.580 -29.80 | |||
| rat | chromosome:5:162120629:162120719:1 | intergenic |
novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (54 loci)
block309636 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.371 | no | no | 0.50/0.55 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 23 27 | 1 -5 | 5arm 5arm_loop_3arm | 27 27 | nd nd | 0.33 0.55 | 4 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CUACUCU------------------------------------------------------------ | 1 | novel |
| seed | ------------------------CCACCUA---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---------------------------CCTACTCTGACAACCAGCCA------------------------------------------------ | 20 | 1 | |
| -----------------------ACCACCTACTCTGACAAC------------------------------------------------------ | 18 | 1 | |
| rat | tcatcaagcagacccagactttcACCACCTACTCTGACAACCAGCCAggtgtactcatccaggttttcaaaggtgaaagggccatgaccagtgac | ||
| *********************************************************************************************** | |||
| rat | ((((....((...((...((((((((((((....(((..(((.....)))....)))...)))).......))))))))))...))....)))). | 0.520 -19.51 |
| rat | chromosome:13:55458133:55458227:1 | intergenic |
block730621 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.50/0.55 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 16 | 1 -5 | 5arm 5arm_loop_3arm | 27 27 | nd nd | 0.39 0.55 | 4 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------CUACUCU---------------------------------------------- | 1 | novel |
| seed | -------------CCACCUA-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ------------ACCACCTACTCTGACAAC---------------------------------------- | 18 | 1 | |
| ----------------CCTACTCTGACAACCAGCCA---------------------------------- | 20 | 1 | |
| rat | acccagactttcACCACCTACTCTGACAACCAGCCAggtgtactcatccaggtgtatgaaggtgaaaggg | ||
| ********************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041961 ENSRNOG00000027230 Q5D003_RAT | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000036240 ENSRNOG00000027230 Q5D003_RAT | ||
| rat | .(((..(((((((.(((((....(((..(((.....)))....)))...)))))..)))))))....))) | 0.560 -18.60 |
| rat | chromosome:18:16734423:16734492:1 | Same_strand|Intronic_coding|ENSRNOT00000036240|ENSRNOG00000027230 ## ENSRNOG00000027230|protein_coding|Q5D003_RAT|Putative uncharacterized protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5D003] |
block843832 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.416 | no | no | 0.58/0.58 | 19/26/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 14 | -3 -14 | 5arm_loop 5arm_loop_3arm | 30 30 | nd nd | 0.47 0.50 | 4 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------UGUCGUA-------------------------------- | 1 | novel |
| seed | -----------CCACUGU------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------TCCACTGTCGTAGCACCAC------------------------- | 19 | 1 | |
| --------------CTGTCGTAGCACCACCCGTAGCAACT-------------- | 26 | 1 | |
| rat | tcccaggaatTCCACTGTCGTAGCACCACCCGTAGCAACTaaagtgtttcagga | ||
| ****************************************************** | |||
| rat | (((...(((...((((...((.((((.....)).)).))...)))).))).))) | 0.980 -9.30 |
| rat | chromosome:1:49953745:49953798:-1 | intergenic |
block844391 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.42/0.50 | 19/20/0.40 | 0.7 0.0 | 0.3 0.0 | 3 2 | 0 0 | 2 2 | 0 0 | 18 10 | -15 -3 | 5arm_loop_3arm 3arm_loop | 33 33 | nd nd | 0.47 0.53 | 6 5 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------GUGCUAG------------------------------ | 2 | novel | ||
| seed | ----------------------------CCAGUAA--------------------- | 2 | novel | ||
| seed | ---------------------GCUAGGA---------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ---------------------------ACCAGTAACCTATGGAAGA---------- | 19 | 1 | - | 1 | |
| ------------------TGTGCTAGGACCAGTAACCT------------------ | 20 | - | - | 2 | |
| --------------------TGCTAGGACCAGTAACCTA----------------- | 19 | - | 1 | - | |
| rat | cttgtgataaatgccatgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagc | ||||
| ******************************************************** | |||||
| ------------------------------------------------------------------ | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||
| rat | ((..(((......(((((..((((......))))...)))))......)))..)). | 1.000 -13.30 | |||
| rat | chromosome:1:50181382:50181437:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30454 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.