other hairpins
novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (54 loci)
novel_lenNOK_5varHIGH_bulgeHIGH (52 loci)
block42258 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.806 | no | no | 0.57/0.61 | 18/23/0.50 | 2.5 | 0.0 | 2 | 0 | 2 | 0 | 25 | 7 | 5arm | 1 | 44 | 0.28 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------GAAGACU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------CUGCGAU------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ------------------------------ACTGCGATGGCGTTCCTG--------------------------------------------------------------------- | 18 | 1 | - | |
| -------------------------AGAAGACTGCGATGGCGTTCCTG--------------------------------------------------------------------- | 23 | - | 1 | |
| rat | tgcgcgcgcggattatctctggcctAGAAGACTGCGATGGCGTTCCTGtgtcagcgcgacagctacgcacgggaggtgcggaccggtgggcgagggtcctaaggacgagggtgccat | |||
| ********************************************************************************************************************* | ||||
| ------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000055238 ENSRNOG00000036814 Atp6v0a1 | |||
| ------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000055237 ENSRNOG00000036814 Atp6v0a1 | |||
| ...............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000028047 ENSRNOG00000020658 LOC619440 | |||
| rat | ((.((((.((..(((.((((.(((((.....((((....((.(((((((((.(((......)))..))))))))))))))).....))))).))))...)))...))...)))))). | 0.470 -40.60 | ||
| rat | chromosome:10:90015345:90015461:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000055238|ENSRNOG00000036814 ## Same_strand|Boundary_non-coding|ENSRNOT00000028047|ENSRNOG00000020658 ## ENSRNOG00000036814|protein_coding|Atp6v0a1|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] ## ENSRNOG00000020658|protein_coding|LOC619440|Alanyl-tRNA synthetase domain-containing protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q5XI97] |
block93523 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.749 | no | no | 0.52/0.58 | 19/23/0.33 | 2.0 | 0.7 | 3 | 0 | 2 | 0 | 13 | 8 | 5arm | 1 | nd | 0.22 | 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------CCAAUAG---------------------------------------------------------------------- | 2 | novel | |
| seed | --------------GAGUUCC---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S1 | |||
| -------------------CCCAATAGCAGCAGCAGAG----------------------------------------------------------- | 19 | - | 2 | |
| -------------AGAGTTCCCAATAGCAGCAGCAG------------------------------------------------------------- | 23 | 1 | - | |
| rat | gagatggcagcttAGAGTTCCCAATAGCAGCAGCAGAGcctgtggccccgtgtagccttgtctgctggactgcctgctcaggaagtctcccctcttg | |||
| ************************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------------------- | ENSRNOT00000055387 ENSRNOG00000036886 | |||
| rat | ((((.((......(((.((((....((((((((((((......(((........)))...)))))))......)))))..)))).))).)).)))). | 0.610 -28.30 | ||
| rat | chromosome:10:86594165:86594261:1 | Opposite_strand|Intronic_coding|ENSRNOT00000055387|ENSRNOG00000036886 ## ENSRNOG00000036886|protein_coding|| |
block135343 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.272 | no | no | 0.61/0.67 | 18/19/0.00 | 4.9 0.0 | 5.4 0.0 | 7 1 | 0 0 | 5 1 | 0 0 | 13 28 | 23 18 | 5arm 5arm | 1 1 | nd nd | 0.28 0.44 | 4 4 | 8 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------CCAGCAU----------------------------------------------------------------------------------------- | 2 | miR-338 | |||||
| seed | ----------------GGCUGCC---------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------UGCCAGC------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------UGGGUCU--------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------CUGCCAG-------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------AAGGCUG------------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -----------------------AGCAUCU--------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| --------------------GCCAGCATCTGGGTCTCCT------------------------------------------------------------------------------ | 19 | - | - | 1 | 1 | - | - | |
| ----------------------CAGCATCTGGGTCTCCTGG---------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ---------------AGGCTGCCAGCATCTGGG------------------------------------------------------------------------------------ | 18 | - | - | 1 | - | - | - | |
| -------------GAAGGCTGCCAGCATCTG-------------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ----------------------------CTGGGTCTCCTGGGTTCC----------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ------------------CTGCCAGCATCTGGGTCTC-------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| -----------------GCTGCCAGCATCTGGGTC---------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| rat | gaggctagtcgggGAAGGCTGCCAGCATCTGGGTCTCCTGGGTTCCgcttggaccagggcgctgaaggaggcagtggccggccaacccgcacccatctggtcgctgtcgccgagcct | |||||||
| ********************************************************************************************************************* | ||||||||
| ........................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002645 ENSRNOG00000001928 Il1rap | |||||||
| rat | .((((...((((.((.(((.(((((....(((((....(((((......(((.((.((.(((((.......))))).)))))))))))).))))).))))).))).)).)))))))) | 0.940 -52.70 | ||||||
| rat | chromosome:11:76222414:76222530:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000002645|ENSRNOG00000001928 ## ENSRNOG00000001928|protein_coding|Il1rap|Interleukin-1 receptor accessory protein precursor (IL-1 receptor accessory protein) (IL-1RAcP). [Source:UniProtKB/Swiss-Prot;Acc:Q63621] |
block172357 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.014 | no | no | 0.50/0.63 | 18/23/0.22 | 0.0 0.6 2.0 | 0.0 1.0 4.0 | 1 5 3 | 0 0 0 | 1 1 2 | 0 0 0 | 11 18 28 | 26 16 3 | 5arm 5arm 5arm | 1 3 4 | nd nd nd | 0.53 0.56 0.21 | 8 8 4 | 9 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------AGAGCAU-------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------------CAGGAGA---------------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------AGCAUAG------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------GAGCAUA------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------GGCAGGG--------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------AAGUCAG---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ------------------GAGAGCATAGGCAGGAGA---------------------------------------------------------------------------------- | 18 | 3 | - | |
| -------------------AGAGCATAGGCAGGAGAA--------------------------------------------------------------------------------- | 18 | 1 | - | |
| ----------------------------GCAGGAGAAGTCAGAGAC------------------------------------------------------------------------ | 18 | 1 | - | |
| ----------------------------------GAAGTCAGAGACTGGAGGC----------------------------------------------------------------- | 19 | 1 | - | |
| -----------AGGCAGGGAGAGCATAGGC---------------------------------------------------------------------------------------- | 19 | 1 | - | |
| ----------------------------GCAGGAGAAGTCAGAGACTGGAG------------------------------------------------------------------- | 23 | - | 1 | |
| --------------------GAGCATAGGCAGGAGAAGTC------------------------------------------------------------------------------ | 20 | 1 | - | |
| rat | tccaagtggtgAGGCAGGGAGAGCATAGGCAGGAGAAGTCAGAGACTGGAGGCtgctaaaagcagcttctgagttggtttcccattcttggcaaaacaattcctccattccagaggga | |||
| ********************************************************************************************************************** | ||||
| rat | (((...(((...((.(((((........((..(((((....(((((((((((((((.....))))))))).....))))))...))))).)).......)))))))...)))...))) | 0.480 -39.96 | ||
| rat | chromosome:11:80170186:80170303:1 | intergenic |
block337864 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.288 | no | no | 0.45/0.47 | 19/22/0.50 | 1.5 | 3.0 | 2 | 0 | 2 | 0 | 5 | 14 | 5arm | 3 | nd | 0.21 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------UACCUGA------------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------CAGUACC--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -----GCAGTACCTGAATGAGATC---------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------GTACCTGAATGAGATCAAGGAC---------------------------------------------------------------------------------------- | 22 | 1 | - | |
| rat | ggtgtGCAGTACCTGAATGAGATCAAGGACagtgtggtggctggattccagtgggccactaaggaggagaatatgcgtgctgtgcgatttgatgttcatgatgtgaccctgcatgctg | |||
| ********************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000060950 ENSRNOG00000039734 LOC681149 | |||
| rat | ((((((((((((....(((((((((((.((((((((((.(((((...)))))..)))))...................)))))....)))))).)))))...)))...))))))))). | 0.420 -33.50 | ||
| rat | chromosome:14:11318677:11318794:-1 | Same_strand|Intronic_coding|ENSRNOT00000060950|ENSRNOG00000039734 ## ENSRNOG00000039734|protein_coding|LOC681149| |
block347610 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.605 | no | no | 0.67/0.73 | 19/22/0.67 | 1.5 | 0.8 | 6 | 0 | 4 | 0 | 21 | 9 | 3arm | 1 | nd | 0.24 | 4 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------GCGUUGC---------------------------------- | 3 | novel | |||
| seed | ----------------------------------------------------------------GGCGUUG----------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------UCCCGGC--------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------CCGGCGU------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T3S1 | T3S2 | T4S2 | T5S1 | |||
| ----------------------------------------------------------------GGCGTTGCGGTGAGTGTCC----------------------- | 19 | - | 2 | - | - | |
| -------------------------------------------------------------CCCGGCGTTGCGGTGAGTGTCC----------------------- | 22 | - | - | - | 1 | |
| ---------------------------------------------------------------CGGCGTTGCGGTGAGTGTCC----------------------- | 20 | 1 | - | - | - | |
| -----------------------------------------------------------TTCCCGGCGTTGCGGTGAGTG-------------------------- | 21 | - | 1 | - | - | |
| ----------------------------------------------------------------GGCGTTGCGGTGAGTGTCCAC--------------------- | 21 | - | - | 1 | - | |
| rat | gctcctcccctctctctggtggttgtatcagcgcagcgcgcaccggcttggcctttctgTTCCCGGCGTTGCGGTGAGTGTCCACtctgcagggtgtcaggatgtc | |||||
| ********************************************************************************************************** | ||||||
| rat | ((((((.((((......(((((.....(((.(((((((((((..(((...)))....))).....)))))))).)))....)))))....))))....)))).)). | 0.960 -35.60 | ||||
| rat | chromosome:14:36516019:36516124:-1 | intergenic |
block392465 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.749 | no | no | 0.67/0.79 | 18/24/0.33 | 3.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 12 8 | 18 28 | 3arm 3arm | 1 1 | nd nd | 0.29 0.56 | 4 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------GCGCGCU---------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------------GUCCAGC------------------ | 1 | novel | ||
| seed | -----------------------------------------------------------------------------------------UCGCGUC---------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S1 | |||
| ----------------------------------------------------------------------------------TGCGCGCTCGCGTCCAGCCACCCC------------ | 24 | 1 | - | - | |
| ----------------------------------------------------------------------------------------CTCGCGTCCAGCCACCCC------------ | 18 | - | - | 1 | |
| --------------------------------------------------------------------------------------------CGTCCAGCCACCCCATCA-------- | 18 | - | 1 | - | |
| rat | tccgccccggggagggcccccgcggagcgccgggcggggcagcggctttaagggttggcctccgggacccgggctgctcactTGCGCGCTCGCGTCCAGCCACCCCATCAtggagcgg | ||||
| ********************************************************************************************************************** | |||||
| ...............................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002809 ENSRNOG00000002050 Igfbp7 | ||||
| rat | .((((.((((((..(((...(((.((((((...(((((..(((((((....((((...((....)))))).)))))))..))))))))))))))....)))..)))....))).)))) | 0.580 -58.50 | |||
| rat | chromosome:14:33010108:33010225:1 | Same_strand|Boundary_non-coding|ENSRNOT00000002809|ENSRNOG00000002050 ## ENSRNOG00000002050|protein_coding|Igfbp7|insulin-like growth factor binding protein 7 [Source:RefSeq_peptide;Acc:NP_001013066] |
block433630 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.411 | no | no | 0.68/0.72 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 2 | 0 | 12 | 11 | 3arm | 1 | nd | 0.28 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------GUGCGCG------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------CGCGUUG---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ------------------------------------------------------------------GGTGCGCGTTGACAGCAGC-------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------GCGCGTTGACAGCAGCGG------------ | 18 | 1 | - | |
| rat | tgttgacagcccgcaggctgggacgaccggcgctaggaccccgcgggcggcggcagcgcgcggggcGGTGCGCGTTGACAGCAGCGGcgggacgcggcg | |||
| *************************************************************************************************** | ||||
| rat | .((((....(((((..((((...((((..((((.....(((((((.((.......)).)))))))....)))))))).))))....)))))...)))). | 0.820 -51.80 | ||
| rat | chromosome:15:18815190:18815288:-1 | intergenic ## {Repeats: GC_rich 1 30 -1 class=Low_complexity,GC_rich 1 3 -1 class=Low_complexity} |
block644094 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.079 | no | no | 0.47/0.57 | 19/21/0.50 | 2.0 | 1.0 | 2 | 0 | 2 | 0 | 7 | 2 | 3arm | 1 | nd | 0.24 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------GCCUCUU---------------------- | 1 | novel | |
| seed | -------------------------------------------------CUUUGUG------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ------------------------------------------------TCTTTGTGTGGTGTCCTGA------- | 19 | - | 1 | |
| --------------------------------------------GGCCTCTTTGTGTGGTGTCCT--------- | 21 | 1 | - | |
| rat | tcgctggtgacgcaccgcgcggggagggtgcgcgcgccttcagcGGCCTCTTTGTGTGGTGTCCTGAtagggga | |||
| ************************************************************************** | ||||
| rat | ((.(((.....((((((((((((((((.(((...........))).)))))))))))))))).....))).)). | 0.900 -35.40 | ||
| rat | chromosome:17:12450750:12450823:1 | intergenic |
block860647 [novel_lenNOK_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.397 | no | no | 0.44/0.50 | 18/20/0.50 | 1.5 | 0.5 | 2 | 0 | 2 | 0 | 5 | 12 | 3arm | 1 | nd | 0.28 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------GGAUUCU------------------ | 1 | novel | |
| seed | ----------------------------------------------------------UUCUGGG--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ---------------------------------------------------------ATTCTGGGTTTGACCCTA----- | 18 | - | 1 | |
| ------------------------------------------------------AGGATTCTGGGTTTGACCCT------ | 20 | 1 | - | |
| rat | gctaccagagaccttagggagtcgtgcggaggagctggtggcttagctcagctcAGGATTCTGGGTTTGACCCTAgtgct | |||
| ******************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000028393 ENSRNOG00000020914 Spnb4 | |||
| rat | ((.((.((((((((...((((((.((.((..(((((((....)))))))..)))).))))))))))))....)).)))). | 0.690 -26.00 | ||
| rat | chromosome:1:82509515:82509594:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000057192|ENSRNOG00000020914 ## Same_strand|Intronic_coding|ENSRNOT00000028393|ENSRNOG00000020914 ## ENSRNOG00000020914|protein_coding|Spnb4|Spnb4 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5BJU8] |
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