other hairpins
novel_lenNOK_Multihit_randfoldOK_bulgeHIGH (52 loci)
block843755 [novel_lenNOK_Multihit_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.48 | 19/21/0.67 | 0.7 | 0.0 | 3 | 0 | 1 | 0 | 9 | 11 | 5arm | 25 | nd | 0.29 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------CUCCAAA-------------------------------------------------------------------- | 2 | novel |
| seed | ------------CCAAAGU------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------CCTCCAAAGTTGGAAGAACTG------------------------------------------------------- | 21 | 2 | |
| -----------TCCAAAGTTGGAAGAACTG------------------------------------------------------- | 19 | 1 | |
| rat | gttgcatgaCCTCCAAAGTTGGAAGAACTGcacggtatgagagcctcaactgttgcaggacctccaatgttgtaggaacacaata | ||
| ************************************************************************************* | |||
| rat | ((((.....(((.(((.((((((....(((((((((.((((...))))))))).))))....)))))).))).)))....)))). | 1.000 -27.30 |
| rat | chromosome:1:49950155:49950239:-1 | intergenic |
block844319 [novel_lenNOK_Multihit_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.48 | 19/21/0.67 | 0.7 | 0.0 | 3 | 0 | 1 | 0 | 9 | 11 | 5arm | 25 | nd | 0.29 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------CUCCAAA-------------------------------------------------------------------- | 2 | novel |
| seed | ------------CCAAAGU------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------CCTCCAAAGTTGGAAGAACTG------------------------------------------------------- | 21 | 2 | |
| -----------TCCAAAGTTGGAAGAACTG------------------------------------------------------- | 19 | 1 | |
| rat | gttgcatgaCCTCCAAAGTTGGAAGAACTGcacggtatgagagcctcaactgttgcaggacctccaatgttgtaggaacacaata | ||
| ************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||
| rat | ((((.....(((.(((.((((((....(((((((((.((((...))))))))).))))....)))))).))).)))....)))). | 1.000 -27.30 |
| rat | chromosome:1:50178217:50178301:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
block844575 [novel_lenNOK_Multihit_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.48 | 19/21/0.67 | 0.7 | 0.0 | 3 | 0 | 1 | 0 | 9 | 11 | 5arm | 25 | nd | 0.29 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------CUCCAAA-------------------------------------------------------------------- | 2 | novel |
| seed | ------------CCAAAGU------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------CCTCCAAAGTTGGAAGAACTG------------------------------------------------------- | 21 | 2 | |
| -----------TCCAAAGTTGGAAGAACTG------------------------------------------------------- | 19 | 1 | |
| rat | gttgcatgaCCTCCAAAGTTGGAAGAACTGcacggtatgagagcctcaactgttgcaggacctccaatgttgtaggaacacaata | ||
| ************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||
| rat | ((((.....(((.(((.((((((....(((((((((.((((...))))))))).))))....)))))).))).)))....)))). | 1.000 -27.30 |
| rat | chromosome:1:50291011:50291095:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
block845821 [novel_lenNOK_Multihit_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.48 | 19/21/0.67 | 0.7 | 0.0 | 3 | 0 | 1 | 0 | 9 | 11 | 5arm | 25 | nd | 0.29 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------CUCCAAA-------------------------------------------------------------------- | 2 | novel |
| seed | ------------CCAAAGU------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------CCTCCAAAGTTGGAAGAACTG------------------------------------------------------- | 21 | 2 | |
| -----------TCCAAAGTTGGAAGAACTG------------------------------------------------------- | 19 | 1 | |
| rat | gttgcatgaCCTCCAAAGTTGGAAGAACTGcacggtatgagagcctcaactgttgcaggacctccaatgttgtaggaacacaata | ||
| ************************************************************************************* | |||
| rat | ((((.....(((.(((.((((((....(((((((((.((((...))))))))).))))....)))))).))).)))....)))). | 1.000 -27.30 |
| rat | chromosome:1:50836857:50836941:-1 | intergenic |
novel_lenNOK_multiarm_5varHIGH_loopOverlap (51 loci)
block16151 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.532 | no | no | 0.52/0.84 | 18/22/0.33 | 1.0 1.5 1.6 | 1.5 1.5 3.6 | 2 2 5 | 0 0 0 | 2 2 2 | 0 0 0 | 25 31 40 | -1 -8 -20 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.28 0.42 0.41 | 2 6 8 | 9 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------GGAGCUG---------------------------------------------------------- | 3 | novel | ||||
| seed | ---------------------------------------------CUGAGGU------------------------------------------------------ | 2 | novel | ||||
| seed | -----------------------------------CGGGACG---------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------CACCGCG----------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------GCGCGGG------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------GGCACCG------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S2 | |||
| ----------------------------------------CGGAGCTGAGGTCTTCCT------------------------------------------------ | 18 | - | - | - | 2 | - | |
| --------------------------------------------GCTGAGGTCTTCCTTCTCGAT----------------------------------------- | 21 | - | - | - | 1 | 1 | |
| ----------------------------------------CGGAGCTGAGGTCTTCCTTCTC-------------------------------------------- | 22 | - | - | - | 1 | - | |
| -------------------------TGGCACCGCGCGGGACGG--------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| ---------------------------GCACCGCGCGGGACGGAGC------------------------------------------------------------ | 19 | - | - | 1 | - | - | |
| ----------------------------------GCGGGACGGAGCTGAGGTC----------------------------------------------------- | 19 | 1 | - | - | - | - | |
| -------------------------------CGCGCGGGACGGAGCTGAG-------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| rat | tccacgagttggcattgtcaggcggTGGCACCGCGCGGGACGGAGCTGAGGTCTTCCTTCTCGATagcgtacggcggctgccgagtagagcgatagggtctgtgga | ||||||
| ********************************************************************************************************** | |||||||
| ...................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004885 ENSRNOG00000003645 Hnrpab | ||||||
| rat | (((((((.((.((.(((((.((((((.((..(((.(((((.((((........)))).)))))...)))....)).)))))))).))).))....)).)).))))) | 0.850 -39.70 | |||||
| rat | chromosome:10:37123097:37123202:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000004885|ENSRNOG00000003645 ## ENSRNOG00000003645|protein_coding|Hnrpab|heterogeneous nuclear ribonucleoprotein A/B [Source:RefSeq_peptide;Acc:NP_112620] ## {SimpF: oe = 0.97 1 CpG} |
block68754 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.586 | no | no | 0.61/0.74 | 18/22/0.20 | 0.0 2.0 0.0 | 0.0 1.0 0.0 | 1 3 1 | 0 0 0 | 1 2 1 | 0 0 0 | 37 24 20 | -13 -3 6 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.16 0.22 | 4 2 2 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------UCGCGUG--------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------GCGUGGG------------------------------------- | 1 | novel | |||
| seed | --------------------------------------UGCGUCC---------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------GUGGGUC----------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------UCGACCU------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T3S2 | |||
| ----------------------------------------------CGCGTGGGTCGACCTGGT--------------------------- | 18 | - | 1 | - | - | |
| -------------------------------------GTGCGTCCTCGCGTGGGTC----------------------------------- | 19 | - | - | 1 | - | |
| -----------------------------------------------------GTCGACCTGGTTCCTCAG-------------------- | 18 | - | - | - | 1 | |
| --------------------------------------------CTCGCGTGGGTCGACCTGGTTC------------------------- | 22 | 1 | - | - | - | |
| ------------------------------------------------CGTGGGTCGACCTGGTTCC------------------------ | 19 | 1 | - | - | - | |
| rat | gggcgggtgcgcgggccggagggcgggcggatttggcGTGCGTCCTCGCGTGGGTCGACCTGGTTCCTCAGggccggtgtgttggtggcca | |||||
| ******************************************************************************************* | ||||||
| rat | ((((.((..(((.((((.(((((((((.....(((((.(((((....))))).)))))))))..)))))..)))).)))..)).))..)). | 0.710 -41.30 | ||||
| rat | chromosome:10:35883789:35883879:1 | intergenic |
block112792 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.453 | no | no | 0.60/0.74 | 18/22/0.25 | 1.8 0.0 | 1.2 1.0 | 5 3 | 0 0 | 3 2 | 0 0 | 2 14 | -2 -12 | 5arm_loop 5arm_loop_3arm | 8 9 | nd nd | 0.21 0.32 | 3 4 | 8 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------ACGCGGA---------------------------------------- | 3 | novel | ||||
| seed | ---------------AGCCAGC---------------------------------- | 3 | novel | ||||
| seed | ------UGAACGC------------------------------------------- | 1 | novel | ||||
| seed | ---CAUUGAA---------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T5S1 | |||
| --------AACGCGGAGCCAGCTCTC------------------------------ | 18 | - | 1 | - | 2 | - | |
| --------------GAGCCAGCTCTCGGGGGTC----------------------- | 19 | - | - | 1 | - | 1 | |
| --------------GAGCCAGCTCTCGGGGGTCTCT-------------------- | 22 | - | - | 1 | - | - | |
| -----TTGAACGCGGAGCCAGCTC-------------------------------- | 19 | 1 | - | - | - | - | |
| --TCATTGAACGCGGAGCCAGC---------------------------------- | 20 | 1 | - | - | - | - | |
| rat | gcTCATTGAACGCGGAGCCAGCTCTCGGGGGTCTCTgtgtggtctcatcatcagca | ||||||
| ******************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000013159 ENSRNOG00000009920 LOC307023 | ||||||
| rat | (((...(((((((((((...((((....)))))))))))).......)))..))). | 0.970 -15.81 | |||||
| rat | chromosome:11:17719687:17719742:-1 | Same_strand|Intronic_coding|ENSRNOT00000013159|ENSRNOG00000009920 ## ENSRNOG00000009920|protein_coding|LOC307023| |
block198911 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.113 | no | no | 0.50/0.61 | 18/22/0.20 | 0.0 0.5 1.5 | 0.0 0.0 1.0 | 1 2 2 | 0 0 0 | 1 2 2 | 0 0 0 | 45 22 16 | -21 -1 3 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.64 0.37 0.28 | 7 5 2 | 5 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------UGGGGAU-------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------AGAACAU-------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------CAGAACA--------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------GAGUUUG---------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------------ACAUGGG----------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| ----------------------------------------------------GCAGAACATGGGGATAGCC---------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------------------------------ATGGGGATAGCCGGAGGA---------------- | 18 | - | - | 1 | - | - | |
| -----------------------------------------------------CAGAACATGGGGATAGCC---------------------- | 18 | 1 | - | - | - | - | |
| ---------------------------------------------GGAGTTTGCAGAACATGGGGAT-------------------------- | 22 | - | - | - | 1 | - | |
| --------------------------------------------------------AACATGGGGATAGCCGGAG------------------ | 19 | - | 1 | - | - | - | |
| rat | agcccccaacggcctaaggggcgcgaccctggctccctaagagatGGAGTTTGCAGAACATGGGGATAGCCGGAGGAagcctagccagggcta | ||||||
| ********************************************************************************************* | |||||||
| rat | (((((.....(((.....((((....(((((((((((((.....((.......)).....))))))..))))).))..)))).))).))))). | 0.630 -34.90 | |||||
| rat | chromosome:12:36081533:36081625:-1 | intergenic |
block211642 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.406 | no | no | 0.54/0.74 | 19/26/0.00 | 1.5 0.0 0.0 | 0.2 0.0 0.0 | 4 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 28 18 13 | -16 0 5 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.35 0.26 0.21 | 3 2 2 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------GAACACU------------------------------------------ | 3 | novel | |||
| seed | -----------------------------------UGCAUGG------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------UGUAACC------------------------ | 1 | novel | |||
| seed | ------------------------------------------CCGAGUG----------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T4S1 | T5S1 | |||
| ----------------------------AGAACACTGCATGGCCGAGTGTAACC------------------------ | 26 | - | - | - | 3 | |
| ----------------------------------------------GTGTAACCGCCTGGCCCGC------------- | 19 | 1 | - | - | - | |
| ----------------------------------CTGCATGGCCGAGTGTAAC------------------------- | 19 | - | 1 | - | - | |
| -----------------------------------------GCCGAGTGTAACCGCCTGG------------------ | 19 | - | - | 1 | - | |
| rat | aagtaccactgaagaggggtcactgtggAGAACACTGCATGGCCGAGTGTAACCGCCTGGCCCGCtccgatctgctta | |||||
| ****************************************************************************** | ||||||
| >>>>>>>>>>>>>>>>>....................................................................... | ENSRNOT00000033537 ENSRNOG00000027049 LOC690441 | |||||
| >>>>>>>>>>>>>>>>>....................................................................... | ENSRNOT00000060939 ENSRNOG00000027049 LOC690441 | |||||
| rat | (((((........(((((((((..((((...(((((((...))..)))))..)))).)))))).))).....))))). | 0.870 -22.62 | ||||
| rat | chromosome:12:9741358:9741435:1 | intergenic |
block257091 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.136 | no | no | 0.38/0.67 | 18/24/0.25 | 0.0 0.0 1.5 0.0 0.0 | 0.0 0.0 1.0 0.3 0.0 | 1 1 2 3 1 | 0 0 0 0 0 | 1 1 2 2 1 | 0 0 0 0 0 | 11 22 27 36 41 | 16 10 3 -5 -8 | 5arm 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.58 0.42 0.17 0.35 0.39 | 7 7 2 5 5 | 8 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------CCGGUGC-------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------GACUGUC-------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------GCACUAG--------------------------------------------------------- | 1 | novel | |||
| seed | ------------UCCUGUA--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------UUAGACU----------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------CCCUAUU---------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| ------------------------------------TCCGGTGCACTAGCTCCCA--------------------------------------------------- | 19 | - | - | - | 2 | |
| -----------ATCCTGTATGTACCCTATTAGACT----------------------------------------------------------------------- | 24 | - | - | - | 1 | |
| ----------------------ACCCTATTAGACTGTCCGG----------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ------------------------------------TCCGGTGCACTAGCTCCCAG-------------------------------------------------- | 20 | 1 | - | - | - | |
| ------------------------------AGACTGTCCGGTGCACTA---------------------------------------------------------- | 18 | - | - | - | 1 | |
| ---------------------------ATTAGACTGTCCGGTGCAC------------------------------------------------------------ | 19 | - | 1 | - | - | |
| -----------------------------------------TGCACTAGCTCCCAGGGC----------------------------------------------- | 18 | - | - | 1 | - | |
| rat | ctggcctggttATCCTGTATGTACCCTATTAGACTGTCCGGTGCACTAGCTCCCAGGGCtcctgttctaccggacattcgtgcttcccggctggcccaaagtccgg | |||||
| ********************************************************************************************************** | ||||||
| rat | ((((.(((((((.((.....((((.......((.(((((((((((..((((.....))))..)))...)))))))).)))))).....)).)))))...)).)))) | 0.840 -34.11 | ||||
| rat | chromosome:13:44890910:44891015:-1 | intergenic |
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