other hairpins
novel_lenNOK_multiarm_5varHIGH_loopOverlap (51 loci)
sblock7428 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.445 | no | no | 0.55/0.89 | 18/20/0.17 | 0.0 2.2 0.0 | 0.0 2.0 0.0 | 1 4 1 | 0 0 0 | 1 3 1 | 0 0 0 | 0 26 20 | 28 -17 -1 | 5arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.33 0.53 0.21 | 4 6 3 | 6 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------AAGUUCA------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------CUCCCGA------------------------------------------- | 1 | novel | ||||
| seed | -GGACCGG-------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCGAAGU---------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------AGACGUG------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T5S2 | |||
| -------------------------------------------------GAAGTTCAGACGTGGGCGG-------------------------- | 19 | - | - | 2 | - | - | |
| ----------------------------------------------CCCGAAGTTCAGACGTGGG----------------------------- | 19 | - | - | - | 1 | - | |
| -------------------------------------------------------CAGACGTGGGCGGCGTCCG-------------------- | 19 | - | 1 | - | - | - | |
| TGGACCGGGCGGCGGGGG---------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| -------------------------------------------TCTCCCGAAGTTCAGACGTG------------------------------- | 20 | - | - | - | - | 1 | |
| rat | TGGACCGGGCGGCGGGGGcgtcgcgccgctgggactctgctggTCTCCCGAAGTTCAGACGTGGGCGGCGTCCGgcggtcgtccacgtccggtg | ||||||
| ********************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000062085 ENSRNOG00000040337 | ||||||
| rat | ...((((((((....(((((....((((((.((((.(((((.((((..........))))...))))).))))))))))))))).)))))))). | 0.840 -47.80 | |||||
| rat | chromosome:3:554193:554286:-1 | Same_strand|Intronic_coding|ENSRNOT00000062085|ENSRNOG00000040337 ## ENSRNOG00000040337|protein_coding|| ## {SimpF: oe = 0.86 0 CpG} |
sblock7429 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.445 | no | no | 0.55/0.89 | 18/20/0.17 | 0.0 2.2 0.0 | 0.0 2.0 0.0 | 1 4 1 | 0 0 0 | 1 3 1 | 0 0 0 | 0 26 20 | 28 -17 -1 | 5arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.33 0.53 0.21 | 4 6 3 | 6 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------AAGUUCA------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------CUCCCGA------------------------------------------- | 1 | novel | ||||
| seed | -GGACCGG-------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCGAAGU---------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------AGACGUG------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T5S2 | |||
| -------------------------------------------------GAAGTTCAGACGTGGGCGG-------------------------- | 19 | - | - | 2 | - | - | |
| ----------------------------------------------CCCGAAGTTCAGACGTGGG----------------------------- | 19 | - | - | - | 1 | - | |
| -------------------------------------------------------CAGACGTGGGCGGCGTCCG-------------------- | 19 | - | 1 | - | - | - | |
| TGGACCGGGCGGCGGGGG---------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| -------------------------------------------TCTCCCGAAGTTCAGACGTG------------------------------- | 20 | - | - | - | - | 1 | |
| rat | TGGACCGGGCGGCGGGGGcgtcgcgccgctgggactctgctggTCTCCCGAAGTTCAGACGTGGGCGGCGTCCGgcggtcgtccacgtccggtg | ||||||
| ********************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000062085 ENSRNOG00000040337 | ||||||
| rat | ...((((((((....(((((....((((((.((((.(((((.((((..........))))...))))).))))))))))))))).)))))))). | 0.840 -47.80 | |||||
| rat | chromosome:3:555862:555955:-1 | Same_strand|Intronic_coding|ENSRNOT00000062085|ENSRNOG00000040337 ## ENSRNOG00000040337|protein_coding|| ## {SimpF: oe = 0.86 0 CpG} |
sblock7873 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.437 | no | no | 0.42/0.61 | 18/25/0.33 | 1.0 3.0 0.0 0.0 0.0 | 1.7 2.0 0.0 0.0 0.0 | 3 3 1 1 1 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 0 10 58 20 16 | 35 20 -17 2 7 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 7 7 7 7 7 | nd nd nd nd nd | 0.63 0.54 0.33 0.26 0.28 | 8 9 4 3 4 | 9 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------GUCUAUC-------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -AAGUCAU------------------------------------------------------------------------------------------------ | 2 | novel | |||
| seed | -----------------------------------------------------------------------GUUCAAG-------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------GCGCAGG-------------------------------------- | 1 | novel | |||
| seed | --------------------AACCAAG----------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----UCAUCAU--------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------GCCAAGU------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T3S1 | T5S1 | |||
| CAAGTCATCATGTCTATCC------------------------------------------------------------------------------------- | 19 | - | - | - | 2 | |
| -----------------------------------------------------------------GGCCAAGTTCAAGTTCCCT-------------------- | 19 | - | 1 | - | - | |
| -------------------GAACCAAGCTGCAGAATAAG----------------------------------------------------------------- | 20 | - | - | 1 | - | |
| ----------TGTCTATCCGAACCAAGCTGCAGA---------------------------------------------------------------------- | 24 | - | - | 1 | - | |
| ----------TGTCTATCCGAACCAAGCTGCAGAA--------------------------------------------------------------------- | 25 | - | - | 1 | - | |
| ----------------------------------------------------------TGCGCAGGGCCAAGTTCA---------------------------- | 18 | - | 1 | - | - | |
| ----------------------------------------------------------------------AGTTCAAGTTCCCTGGCT---------------- | 18 | - | - | - | 1 | |
| ---GTCATCATGTCTATCCGAACC-------------------------------------------------------------------------------- | 21 | 1 | - | - | - | |
| rat | CAAGTCATCATGTCTATCCGAACCAAGCTGCAGAATAAGgaacatgtgattgaggctcTGCGCAGGGCCAAGTTCAAGTTCCCTGGCTgccagaagatccacat | |||||
| ******************************************************************************************************** | ||||||
| rat | .........((((..(((.........((((((.....(((((.((.((((..((((((....)))))).)))))).)))))....)))).))..)))..)))) | 0.490 -24.90 | ||||
| rat | chromosome:3:20720474:20720577:1 | intergenic |
sblock8217 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.194 | no | no | 0.32/0.54 | 19/25/0.47 | 1.5 0.0 0.0 0.0 | 4.5 0.3 0.0 1.5 | 2 3 5 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 0 35 36 23 | 15 -12 -11 -3 | 5arm 5arm_loop_3arm 3arm_loop 3arm_loop | 2 2 2 2 | nd nd nd nd | 0.32 0.55 0.53 0.19 | 4 11 10 2 | 15 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------AACUGCU----------------------------------------------- | 6 | novel |
| seed | ------------------------------------AGGCUGU------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------------CCAUAGU--------------------------------------- | 2 | novel |
| seed | ---------------------------------------------ACUGCUU---------------------------------------------- | 1 | novel |
| seed | ----UCUGAUU--------------------------------------------------------------------------------------- | 1 | novel |
| seed | -GAUUCUG------------------------------------------------------------------------------------------ | 1 | novel |
| seed | -----------------------------------------GUUAACU-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------TAACTGCTTCCATAGTCTG------------------------------------ | 19 | 5 | |
| -----------------------------------TAGGCTGTTAACTGCTTCCA------------------------------------------- | 20 | 2 | |
| ---------------------------------------------------TCCATAGTCTGCATGAGGAGGTGG----------------------- | 24 | 1 | |
| -----------------------------------TAGGCTGTTAACTGCTTCC-------------------------------------------- | 19 | 1 | |
| ---TTCTGATTTGATGAGTGTGTTCTTC---------------------------------------------------------------------- | 25 | 1 | |
| ---------------------------------------------------TCCATAGTCTGCATGAGGAGG-------------------------- | 21 | 1 | |
| ----------------------------------------TGTTAACTGCTTCCATAGTCTG------------------------------------ | 22 | 1 | |
| --------------------------------------------AACTGCTTCCATAGTCTGCA---------------------------------- | 20 | 1 | |
| -------------------------------------------TAACTGCTTCCATAGTCTGC----------------------------------- | 20 | 1 | |
| AGATTCTGATTTGATGAGT------------------------------------------------------------------------------- | 19 | 1 | |
| rat | agattctgatttgatgagtgtgttcttctttttgtTAGGCTGTTAACTGCTTCCATAGTCTGcatgaggaggtggttattcaattttccttcccagat | ||
| ************************************************************************************************** | |||
| rat | ....((((....((((((((....(((((((.((.((((((((...........)))))))))).)))))))....))))))....)).....)))). | 0.940 -21.00 |
| rat | chromosome:3:141754779:141754876:1 | intergenic |
sblock8354 [novel_lenNOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.44/0.65 | 18/20/0.60 | 0.0 0.0 1.7 | 0.0 0.0 1.0 | 1 1 3 | 0 0 0 | 1 1 2 | 0 0 0 | 20 30 30 | -2 -11 -17 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 2 2 | nd nd nd | 0.25 0.47 0.60 | 3 7 7 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------ACGGGAA------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------CGGGAAG------------------------------------------ | 1 | novel | ||
| seed | -------------------------------GCUUUGC-------------------------------------------------- | 1 | novel | ||
| seed | ---------------------UGGACCG------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------GCACGGG--------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T3S2 | |||
| --------------------GTGGACCGCGAGCTTTGCAC------------------------------------------------ | 20 | 1 | - | - | |
| ------------------------------AGCTTTGCACGGGAAGCAA--------------------------------------- | 19 | - | 1 | - | |
| -------------------------------------CACGGGAAGCAAATACAA--------------------------------- | 18 | - | - | 1 | |
| --------------------------------------ACGGGAAGCAAATACAAGGT------------------------------ | 20 | - | 1 | - | |
| -----------------------------------TGCACGGGAAGCAAATACAA--------------------------------- | 20 | - | - | 1 | |
| rat | cagaggcggaagtaaacggcGTGGACCGCGAGCTTTGCACGGGAAGCAAATACAAGGTtgggttcaggctggggttggggagccgctg | ||||
| **************************************************************************************** | |||||
| rat | (((.(((.........((((.((((((.(((.((((((.......)))).....)).))))))))).))))..........))).))) | 0.930 -30.11 | |||
| rat | chromosome:4:26638090:26638177:-1 | intergenic |
novel_shortStem_mirtron (51 loci)
block40798 [novel_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 23 | 5arm | 1 | 1 | 0.18 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----UGAGUAG---------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----GTGAGTAGAGCTATGCCCTGCT-------------------------------------------------------------------------------------------- | 22 | 1 | |
| rat | tcaaGTGAGTAGAGCTATGCCCTGCTgtgcgatgggatgtccagtttggagaggggagataactagatgcgggtctcccattgaggtatacagaccagggcagagcatcctaactaga | ||
| ********************************************************************************************************************** | |||
| >>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000011947 ENSRNOG00000008711 Thrap4 | ||
| >>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000011903 ENSRNOG00000008711 Thrap4 | ||
| >>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000045903 ENSRNOG00000008711 Thrap4 | ||
| rat | ((.(((.((..(((((.((((((((((((((((((((..(((.((((((.............))))))..)))..)))))))).....)))))..))))))).))).)))).))).)) | 0.980 -41.62 |
| rat | chromosome:10:87485089:87485206:-1 | Same_strand|Boundary_coding|ENSRNOT00000011947|ENSRNOG00000008711 ## ENSRNOG00000008711|protein_coding|Thrap4|Mediator of RNA polymerase II transcription subunit 24 (Mediator complex subunit 24) (Thyroid hormone receptor-associated protein 4). [Source:UniProtKB/Swiss-Prot;Acc:Q4V8B3] |
block51028 [novel_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 3 | 32 | 3arm | 1 | 1 | 0.20 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------------CCAUCCC--------------- | 2 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| --------------------------------------------------------------------------------------------CCCATCCCCTTTGCCCTTCA--- | 20 | 2 | |
| rat | gctgctagtgccaggaacgggaggtggttagacagaacccaccagtgcttccgtccttcagggcttgaagcttccccttccacccatctgacCCCATCCCCTTTGCCCTTCAgcc | ||
| ******************************************************************************************************************* | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000030435 ENSRNOG00000011007 Ube2o_predicted | ||
| rat | ((((..((.((.(((...((((((.(((((((..............(((((.((((....))))..)))))...............))))))))).))))))).)).)).)))). | 0.830 -37.95 |
| rat | chromosome:10:106652359:106652473:-1 | Same_strand|Intronic_coding|ENSRNOT00000030435|ENSRNOG00000011007 ## Same_strand|Boundary_non-coding|ENSRNOT00000014699|ENSRNOG00000011007 ## ENSRNOG00000011007|protein_coding|Ube2o_predicted| |
block58151 [novel_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.552 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 10 | 3arm | 1 | 1 | 0.26 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UGAGUAG------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------------------------------------GTGAGTAGTAGTCCCTGGGA | 20 | 1 | |
| rat | ccacgtggaaagaaatgcttcttcgtgaagttttttggaacagaagatcaGTGAGTAGTAGTCCCTGGGA | ||
| ********************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++ | ENSRNOT00000004159 ENSRNOG00000003065 RGD1309459 | ||
| rat | ((.((.(((......((((.(((..(((..(((((((...))))))))))..))).)))).))).)))). | 0.890 -13.30 |
| rat | chromosome:10:10650092:10650161:1 | Same_strand|Boundary_coding|ENSRNOT00000004159|ENSRNOG00000003065 ## ENSRNOG00000003065|protein_coding|RGD1309459|Nuclear protein NP60. [Source:UniProtKB/Swiss-Prot;Acc:Q5RKH0] |
block81679 [novel_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.57/0.57 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 10 | 5arm | 1 | 0 | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----UCCUCGU------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----TTCCTCGTGTTCTCCCCTTGCAG---------------------------------------------------------------- | 23 | 1 | |
| rat | caccTTCCTCGTGTTCTCCCCTTGCAGggtttctggataaaaacaatgacctcctcttccggaacctgaaggaggtgagggagacaggtgg | ||
| ******************************************************************************************* | |||
| ++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++ | ENSRNOT00000036666 ENSRNOG00000004072 Myo1c | ||
| rat | (((((..(((...(((.((((((.((((...((((((....................)))))).)))))))).)).))).)))..))))). | 0.990 -31.95 |
| rat | chromosome:10:62999734:62999824:1 | Same_strand|Intronic_coding|ENSRNOT00000036666|ENSRNOG00000004072 ## ENSRNOG00000004072|protein_coding|Myo1c|myosin IC [Source:RefSeq_peptide;Acc:NP_075580] |
block122793 [novel_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.053 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 20 | 5arm | 1 | 2 | 0.24 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -ACCGAAC-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| AACCGAACTATTTTTCCTTGT------------------------------------------------------- | 21 | 1 | |
| rat | AACCGAACTATTTTTCCTTGTaggttatttcagagctgttcgtcaggaacctgtccaatttggagaaataggtggt | ||
| **************************************************************************** | |||
| ++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000049859 ENSRNOG00000001627 RGD1562717_predicted | ||
| ++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047817 ENSRNOG00000001627 RGD1562717_predicted | ||
| ++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002220 ENSRNOG00000001627 RGD1562717_predicted | ||
| ++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002223 ENSRNOG00000001627 RGD1562717_predicted | ||
| rat | .((((..((((((((((..((.((......(((....((((.....))))))).)).))..)))))))))).)))) | 0.910 -20.20 |
| rat | chromosome:11:44854508:44854583:-1 | Same_strand|Intronic_coding|ENSRNOT00000002223|ENSRNOG00000001627 ## ENSRNOG00000001627|protein_coding|RGD1562717_predicted| |
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