other hairpins
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (49 loci)
sblock9432 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.248 | no | no | 0.26/0.45 | 19/23/0.33 | 0.0 2.3 0.0 | 0.0 1.1 0.0 | 1 7 1 | 0 0 0 | 1 3 1 | 0 0 0 | 4 14 0 | -1 -22 7 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.32 0.47 0.47 | 2 5 5 | 9 | 3 | 0 | -6 |
| reads | miRBase family seed | ||||
| seed | ---------------------------CACCAAU------------------------- | 3 | novel | ||
| seed | ----------------------CCAUUCA------------------------------ | 3 | novel | ||
| seed | --------------------------UCACCAA-------------------------- | 1 | novel | ||
| seed | ----------------------------------------GUCUUAU------------ | 1 | novel | ||
| seed | -----GGAAGAA----------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S2 | T5S1 | |||
| --------------------------TCACCAATATTTATGTCTT-------------- | 19 | - | - | 3 | |
| ---------------------TCCATTCACCAATATTTATGTCT--------------- | 23 | 1 | 1 | - | |
| ----GGGAAGAATCATAACTGTC------------------------------------ | 19 | - | - | 1 | |
| -------------------------TTCACCAATATTTATGTCT--------------- | 19 | - | - | 1 | |
| ---------------------TCCATTCACCAATATTTAT------------------- | 19 | - | - | 1 | |
| ---------------------------------------TGTCTTATCCTAGAGGGAAG | 20 | - | - | 1 | |
| rat | actcGGGAAGAATCATAACTGTCCATTCACCAATATTTATGTCTTATCCTAGAGGGAAG | ||||
| *********************************************************** | |||||
| rat | .(((((((.((..(((((.(((..........))).)))))..)).)))).)))..... | 1.000 -10.10 | |||
| rat | chromosome:5:114556751:114556809:-1 | intergenic |
sblock9706 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.585 | no | no | 0.55/0.67 | 18/24/0.40 | 0.0 1.5 | 0.0 3.5 | 1 4 | 0 0 | 1 3 | 0 0 | 26 29 | -1 -3 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.44 | 2 4 | 5 | 3 | 0 | -2 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------CCGCGGC----------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------GGCAGUG------------------------------------------- | 1 | miR-34a/34c/449a | ||
| seed | ------------------------------------------------GCGGCAG--------------------------------------------- | 1 | novel | ||
| seed | ---------------------------UGGUGCU------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S2 | |||
| ---------------------------------------------GCCGCGGCAGTGAGTATG------------------------------------- | 18 | 1 | - | 1 | |
| -----------------------------------------------CGCGGCAGTGAGTATGTGTGTGAC----------------------------- | 24 | - | 1 | - | |
| -------------------------------------------------CGGCAGTGAGTATGTGTGTG------------------------------- | 20 | - | 1 | - | |
| --------------------------TTGGTGCTTCCTGGTCGCA------------------------------------------------------- | 19 | - | 1 | - | |
| rat | gttcctctacgtgtttcggttcctggTTGGTGCTTCCTGGTCGCAGCCGCGGCAGTGAGTATGTGTGTGACggaccccgagctgtctgcggccgggggac | ||||
| **************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000017707 ENSRNOG00000013078 LOC683686 | ||||
| rat | (((((((..((((...((((((..((((.(((((..((.(((((....)))))))..))).........)).))))..))))))..))))...))))))) | 0.400 -36.30 | |||
| rat | chromosome:5:61258378:61258477:1 | Same_strand|Intronic_coding|ENSRNOT00000017707|ENSRNOG00000013078 ## ENSRNOG00000013078|protein_coding|LOC683686|zinc finger, CCHC domain containing 7 (predicted) (Zcchc7_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001106658] |
sblock972 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.214 | no | no | 0.47/0.52 | 18/22/0.50 | 3.0 0.0 | 1.3 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 32 25 | -4 10 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.36 0.42 | 3 5 | 4 | 3 | 10 | 0 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------CACAGAA--------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------CAGACCA---------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------GUCUUGU------------------------------------ | 1 | novel | ||
| seed | -----------------------------------GACCACA-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S1 | T5S1 | |||
| --------------------------------ACAGACCACACAGAATGCAGGT-------------------------------------------------------- | 22 | - | 1 | - | |
| ---------------------------------------ACACAGAATGCAGGTGTC----------------------------------------------------- | 18 | - | - | 1 | |
| ------------------------------------------------------------------GGTCTTGTCTGTTCTTTGG------------------------- | 19 | 1 | - | - | |
| ----------------------------------AGACCACACAGAATGCAGGTG------------------------------------------------------- | 21 | - | - | 1 | |
| rat | gggatggggcttacttgttctagcttttttttACAGACCACACAGAATGCAGGTGTCttgacttcaGGTCTTGTCTGTTCTTTGGcaagtaatatgtgcagtactgttcc | ||||
| ************************************************************************************************************** | |||||
| rat | (((((((..(((((.((((((.(((.......((((((...((.(((..((((...))))..)))..))...)))))).....))).)).)))).))).))..))))))) | 0.430 -27.50 | |||
| rat | chromosome:1:208425565:208425674:-1 | intergenic |
sblock976 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.45/0.47 | 19/24/0.60 | 0.0 0.0 2.7 | 0.0 0.0 1.0 | 1 1 3 | 0 0 0 | 1 1 2 | 0 0 0 | 16 31 12 | 0 -18 2 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.32 0.41 0.50 | 3 4 5 | 5 | 4 | 2 | 5 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------UCUUAAC------------------------------- | 2 | novel | |||
| seed | -----------------CAGAAGA-------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------UGGCAAG----------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------CGAUCUG----------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S2 | |||
| -----------------------------------------GTCTTAACCCGATCTGAGGGAAAA--------------- | 24 | 2 | - | - | - | |
| -------------------------------ATGGCAAGTTGTCTTAACCCGA--------------------------- | 22 | - | 1 | - | - | |
| ----------------CCAGAAGAATGGTAGATGG--------------------------------------------- | 19 | - | - | 1 | - | |
| -------------------------------------------------CCGATCTGAGGGAAAATGA------------ | 19 | - | - | - | 1 | |
| rat | ggcagactgccaaggcCCAGAAGAATGGTAGATGGCAAGTTGTCTTAACCCGATCTGAGGGAAAATGAatggtagagcca | |||||
| ******************************************************************************** | ||||||
| rat | (((...((((((...(((...(((.(((.((((((....))))))....))).)))..)))........)))))).))). | 0.690 -22.90 | ||||
| rat | chromosome:1:208428435:208428514:-1 | intergenic |
sblock9842 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.345 | no | no | 0.50/0.68 | 18/25/0.25 | 0.0 4.5 0.0 | 0.0 2.5 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 10 23 18 | 16 -16 4 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.50 0.38 0.50 | 5 3 5 | 4 | 2 | -12 | -12 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------CAGUAUA---------------------------- | 1 | novel | |
| seed | -----------CGCUGAA---------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------AGCCAGG--------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------CGGCCCU------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| -----------------------------------CAGCCAGGGGCGGCCCTGCAGTATA---------------------------- | 25 | 1 | - | |
| ----------ACGCTGAAGGGCAGGAAG------------------------------------------------------------ | 18 | 1 | - | |
| --------------------------------------------GCGGCCCTGCAGTATATCCAC----------------------- | 21 | 1 | - | |
| ----------------------------------------------------GCAGTATATCCACCAAGC------------------ | 18 | - | 1 | |
| rat | ctgcgaaaccACGCTGAAGGGCAGGAAGtggaagaCAGCCAGGGGCGGCCCTGCAGTATATCCACCAAGCgccttttctctttctcag | |||
| **************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------- | ENSRNOT00000056107 ENSRNOG00000018194 Srrm1 | |||
| rat | (((.((((.......(((((((.....(((((..((.((.((((....)))))).))...))))).....)))))))...)))).))) | 0.580 -26.30 | ||
| rat | chromosome:5:154145902:154145989:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056105|ENSRNOG00000018194 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000056107|ENSRNOG00000018194 ## ENSRNOG00000018194|protein_coding|Srrm1|serine/arginine repetitive matrix 1 Gene [Source:MGI (curated);Acc:Srrm1-003] |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (49 loci)
sblock10060 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.556 | no | no | 0.67/0.80 | 18/21/0.43 | 1.0 2.0 | 1.5 0.8 | 2 5 | 0 0 | 2 4 | 0 0 | 6 7 | -4 -19 | 5arm_loop 3arm_loop | 1 2 | nd nd | 0.37 0.37 | 2 4 | 7 | 5 | 0 | -4 |
| reads | miRBase family seed | ||||||
| seed | -----------------------CGGAGCA----------------------- | 2 | novel | ||||
| seed | ----------------------------CAGGAGC------------------ | 1 | novel | ||||
| seed | ---------GCGCGAG------------------------------------- | 1 | novel | ||||
| seed | -------------------------GAGCAGG--------------------- | 1 | novel | ||||
| seed | -------CAGCGCG--------------------------------------- | 1 | novel | ||||
| seed | --------------------------AGCAGGA-------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | |||
| ----------------------CCGGAGCAGGAGCGCTGAGAC---------- | 21 | 2 | - | - | - | - | |
| ---------------------------GCAGGAGCGCTGAGACGCG------- | 19 | - | - | - | 1 | - | |
| ------ACAGCGCGAGCCGCAGCCG---------------------------- | 19 | - | - | - | - | 1 | |
| --------AGCGCGAGCCGCAGCCGGAG------------------------- | 20 | - | - | - | 1 | - | |
| -------------------------GAGCAGGAGCGCTGAGAC---------- | 18 | - | - | 1 | - | - | |
| ------------------------GGAGCAGGAGCGCTGAGA----------- | 18 | - | 1 | - | - | - | |
| rat | ccggggACAGCGCGAGCCGCAGCCGGAGCAGGAGCGCTGAGACGCGcctccgg | ||||||
| ***************************************************** | |||||||
| rat | ((((((...(((((((.(((..((......)).)))))....))))))))))) | 0.770 -22.40 | |||||
| rat | chromosome:6:111010148:111010200:-1 | intergenic ## {SimpF: oe = 0.70 -1 CpG} |
sblock10078 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.871 | no | no | 0.37/0.57 | 19/26/0.33 | 3.0 0.0 0.0 0.0 | 1.0 0.0 3.5 0.0 | 2 1 2 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 9 24 8 2 | -6 -15 1 13 | 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.39 0.47 0.42 0.40 | 5 5 4 4 | 6 | 3 | 2 | 0 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------GAGAGAC-------------------------- | 2 | novel | ||
| seed | -----------------------------------------------GAGGUAA-------------- | 1 | novel | ||
| seed | ----------------GGGUGGA--------------------------------------------- | 1 | miR-363* | ||
| seed | -------------------------CAAAGAC------------------------------------ | 1 | novel | ||
| seed | ----------CCCCUUG--------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| ----------------------------------TGAGAGACTGGCTGAGGTAAAGAACA-------- | 26 | - | - | 1 | |
| ---------------TGGGTGGAGTCAAAGACAT---------------------------------- | 19 | - | 1 | - | |
| ----------------------------------TGAGAGACTGGCTGAGGTA--------------- | 19 | 1 | - | - | |
| ----------------------------------------------TGAGGTAAAGAACATAGCTG-- | 20 | - | - | 1 | |
| ---------TCCCCTTGGGTGGAGTCAAAGAC------------------------------------ | 23 | - | - | 1 | |
| ------------------------TCAAAGACATTGAGAGACT------------------------- | 19 | - | - | 1 | |
| rat | tgacaggtaTCCCCTTGGGTGGAGTCAAAGACATTGAGAGACTGGCTGAGGTAAAGAACATAGCTGca | ||||
| ******************************************************************** | |||||
| rat | ((.(((.((((.((((((.(((..((((.....))))....))).))))))....))...)).))))) | 0.500 -10.30 | |||
| rat | chromosome:6:122555850:122555917:-1 | intergenic |
sblock10581 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.054 | no | no | 0.56/0.72 | 18/19/0.00 | 0.0 2.0 0.5 | 0.0 2.2 0.5 | 1 5 2 | 0 0 0 | 1 2 2 | 0 0 0 | 36 35 28 | -3 -6 5 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.61 0.37 0.39 | 7 5 4 | 8 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------CGCUGCA---------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------CAGGCGC-------------------------------------------------- | 2 | novel | ||
| seed | -------------------------------------CAGAAAC------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------------------------GACUGAG-------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------GGACUGA--------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------GGCGCUG------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S2 | |||
| ----------------------------------------------------CCAGGCGCTGCAGGACTG---------------------------------------- | 18 | 2 | - | - | |
| ------------------------------------CCAGAAACAACCAGCACC-------------------------------------------------------- | 18 | 1 | - | - | |
| ------------------------------------------------------AGGCGCTGCAGGACTGAG-------------------------------------- | 18 | - | 1 | - | |
| ---------------------------------------------------------------AGGACTGAGACCACCCCC----------------------------- | 18 | 1 | - | - | |
| ----------------------------------------------------------------GGACTGAGACCACCCCCC---------------------------- | 18 | - | - | 1 | |
| --------------------------------------------------------GCGCTGCAGGACTGAGACC----------------------------------- | 19 | - | 1 | - | |
| --------------------------------------------------------GCGCTGCAGGACTGAGAC------------------------------------ | 18 | 1 | - | - | |
| rat | gacagctggggagggggtggccctgagcaatgtggtCCAGAAACAACCAGCACCAGGCGCTGCAGGACTGAGACCACCCCCCagtcccccacccctgccgctgcctgtct | ||||
| ************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000060648 ENSRNOG00000013220 NP_001101537.1 | ||||
| rat | (((((..((((.((((((((..(((......(((((((((.......((((.......)))).....))).))))))....)))....)))))))).)).))..))))). | 0.910 -45.20 | |||
| rat | chromosome:7:11202647:11202756:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000018075|ENSRNOG00000013220 ## Same_strand|Intronic_non-coding|ENSRNOT00000060648|ENSRNOG00000013220 ## ENSRNOG00000013220|protein_coding|NP_001101537.1|histocompatibility (minor) HA-1 [Source:RefSeq_peptide;Acc:NP_001101537] |
sblock10828 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.381 | no | no | 0.58/0.70 | 19/21/0.33 | 0.0 1.5 0.0 | 0.0 1.5 0.0 | 1 4 1 | 0 0 0 | 1 2 1 | 0 0 0 | 19 31 25 | -5 -16 -4 | 5arm_loop 3arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.48 0.58 0.50 | 6 8 4 | 6 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------CCAAAAG------------------------------------------ | 2 | novel | |
| seed | ---------------------------------GGACCAA--------------------------------------------- | 2 | novel | |
| seed | --------------------CAGCGCG---------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------AGCCCAG------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------ACCAAAAGCCCAGGTCGCC------------------------------- | 19 | 1 | 1 | |
| --------------------------------AGGACCAAAAGCCCAGGTC---------------------------------- | 19 | 2 | - | |
| ----------------------------------------AAGCCCAGGTCGCCCGCATC------------------------- | 20 | 1 | - | |
| -------------------ACAGCGCGGCGAGAGGACCAA--------------------------------------------- | 21 | 1 | - | |
| rat | gcgcaaggggcggagaggcACAGCGCGGCGAGAGGACCAAAAGCCCAGGTCGCCCGCATCcagtgccgcaggacaccaaaagcgc | |||
| ************************************************************************************* | ||||
| ..........................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000007721 ENSRNOG00000005299 Kif5a | |||
| rat | ((((...((.......(((((.(((.(((((..((.........))...)))))))).....)))))........))....)))) | 0.860 -28.86 | ||
| rat | chromosome:7:67220719:67220803:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000007721|ENSRNOG00000005299 ## ENSRNOG00000005299|protein_coding|Kif5a|Kinesin heavy chain isoform 5A (Neuronal kinesin heavy chain) (NKHC) (Kinesin heavy chain neuron-specific 1). [Source:UniProtKB/Swiss-Prot;Acc:Q6QLM7] |
sblock10903 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.50/0.58 | 19/26/0.50 | 4.0 0.0 0.0 | 1.7 2.5 0.0 | 3 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 13 49 29 | 13 -18 4 | 5arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.32 0.52 0.45 | 4 6 6 | 6 | 1 | -10 | -14 |
| reads | miRBase family seed | ||
| seed | --------------------ACUUCCU---------------------------------------------------------------------------------------- | 2 | novel |
| seed | --------------------------------------------------CUCAGUC---------------------------------------------------------- | 2 | novel |
| seed | --------------GGACUUA---------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------UGGGGAA----------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------TGGACTTACTTCCTGTGGCACCCAGG---------------------------------------------------------------------------- | 26 | 1 | |
| -------------------TACTTCCTGTGGCACCCAG----------------------------------------------------------------------------- | 19 | 1 | |
| -------------------------------------------------TCTCAGTCACACCACTCTTGGGGAA----------------------------------------- | 25 | 1 | |
| ------------------------------------------------------------------TTGGGGAAAACAGACCTGGA----------------------------- | 20 | 1 | |
| -------------------------------------------------TCTCAGTCACACCACTCTTG---------------------------------------------- | 20 | 1 | |
| -------------------TACTTCCTGTGGCACCCAGGCAAC------------------------------------------------------------------------ | 24 | 1 | |
| rat | ctgcaccagttgcTGGACTTACTTCCTGTGGCACCCAGGCAACgttcccTCTCAGTCACACCACTCTTGGGGAAAACAGACCTGGAaatgcatctggaaatgagcagtgactcag | ||
| ******************************************************************************************************************* | |||
| rat | (((....(((..(((..((((.((((....(((.(((((.....((((((...(((......)))...))))))......)))))...)))....)))).)))))))..)))))) | 1.000 -36.30 |
| rat | chromosome:7:96051105:96051219:-1 | intergenic |
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