other hairpins
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (49 loci)
sblock9594 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.531 | no | no | 0.58/0.68 | 18/19/0.00 | 0.0 1.5 0.0 | 0.0 1.5 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 2 9 21 | 12 2 -6 | 5arm 5arm 3arm_loop | 1 1 1 | nd nd nd | 0.42 0.37 0.44 | 3 4 5 | 4 | 3 | 0 | -8 |
| reads | miRBase family seed | ||||
| seed | ---CCGAGGG---------------------------------------------------------------- | 1 | novel | ||
| seed | ----------AGCGGAG--------------------------------------------------------- | 1 | novel | ||
| seed | -------------GGAGCUU------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------GGAAUCG------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T2S2 | |||
| ------------CGGAGCTTCCTAGGACTCT------------------------------------------- | 19 | 1 | - | - | |
| -----------------------------------TGGAATCGGCGGTCCCTG--------------------- | 18 | - | 1 | - | |
| ---------GAGCGGAGCTTCCTAGGAC---------------------------------------------- | 19 | 1 | - | - | |
| --ACCGAGGGAGCGGAGCTTC----------------------------------------------------- | 19 | - | - | 1 | |
| rat | ggACCGAGGGAGCGGAGCTTCCTAGGACTCTtgttTGGAATCGGCGGTCCCTGagctattttcccgattgtttg | ||||
| ************************************************************************** | |||||
| rat | ((((...(((((...(((((....(((((.(((........))).)))))..)))))...)))))....)))). | 0.520 -21.20 | |||
| rat | chromosome:5:160005322:160005395:-1 | intergenic |
sblock9750 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.42/0.63 | 19/25/0.25 | 0.0 0.0 3.5 | 0.0 0.0 4.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 10 30 0 | 5 -15 7 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.37 0.32 0.54 | 4 5 5 | 4 | 3 | 2 | 4 |
| reads | miRBase family seed | ||||
| seed | -------------------------------CAGAUGC---------------------------------------- | 1 | novel | ||
| seed | -----------UUGGUGU------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------GCUAUGU----------------- | 1 | novel | ||
| seed | -----------------------------------------------CCCACUU------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S1 | |||
| ------------------------------TCAGATGCCCTGGGAGTCC----------------------------- | 19 | - | 1 | - | |
| ----------TTTGGTGTTTTCTGGCACT------------------------------------------------- | 19 | 1 | - | - | |
| -----------------------------------------------------TGCTATGTCCATGTCAGATCCATGT | 25 | - | - | 1 | |
| ----------------------------------------------TCCCACTTGCTATGTCCATGTCAG-------- | 24 | - | - | 1 | |
| rat | tgtggttgccTTTGGTGTTTTCTGGCACTcTCAGATGCCCTGGGAGTCCCACTTGCTATGTCCATGTCAGATCCATGT | ||||
| ****************************************************************************** | |||||
| rat | .((((((.....(((.((....(((.((((((((.....)))))))).)))...)).....))).....)).)))).. | 0.880 -21.40 | |||
| rat | chromosome:5:79250894:79250971:1 | intergenic |
sblock9751 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.937 | no | no | 0.56/0.78 | 18/25/0.33 | 3.0 0.0 | 0.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 33 34 | -2 0 | 5arm_loop 3arm | 1 1 | nd nd | 0.44 0.44 | 4 5 | 3 | 2 | 2 | 0 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------GGCGAGC-------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------AAUCUCG------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------GAGUUGA------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| --------------------------------------------------------------GGGCGAGCGGACTGACGC---------------------------------- | 18 | 1 | - | |
| ---------------------------------GGAGTTGAATCTCGAGCTGAGTCCC-------------------------------------------------------- | 25 | - | 1 | |
| ---------------------------------------GAATCTCGAGCTGAGTCCCG------------------------------------------------------- | 20 | - | 1 | |
| rat | ggcgcggtagcagctgcaatccgagtcgagtccGGAGTTGAATCTCGAGCTGAGTCCCGagcGGGCGAGCGGACTGACGCgacccgggcggccgtctagtgggctcaccatgcc | |||
| ****************************************************************************************************************** | ||||
| rat | ((((.((((((.((((.....((.(((..((((((.((((..((....(((..((((.....)))).))).....))..)))))))))))))))..))))..))).))).)))) | 0.550 -43.30 | ||
| rat | chromosome:5:79281932:79282045:1 | intergenic |
sblock9841 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.231 | no | no | 0.42/0.50 | 18/19/0.00 | 0.0 1.5 0.0 | 0.0 1.5 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 16 21 34 | -3 -11 -11 | 5arm_loop 5arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.32 0.47 0.78 | 4 9 10 | 4 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | -----------------CCUUUUU-------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------UAGUCCC------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------UUCUAGU--------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------UUGUCAC-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| ----------------------------------CTTGTCACTGTGGGAAAC---------------------------------- | 18 | - | 1 | - | |
| ------------------------CTAGTCCCTTCTTGTCACT------------------------------------------- | 19 | - | - | 1 | |
| ---------------------TTTCTAGTCCCTTCTTGTC---------------------------------------------- | 19 | 1 | - | - | |
| ----------------ACCTTTTTCTAGTCCCTTC--------------------------------------------------- | 19 | 1 | - | - | |
| rat | ctgcgggtgcccagatACCTTTTTCTAGTCCCTTCTTGTCACTGTGGGAAACgctagggttgagcatgtctgggatggaaccgagg | ||||
| ************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056125 ENSRNOG00000037180 | ||||
| rat | ((.(((...((((((((.(((.((((((((((.............)))....)))))))..)))..))))))))......))))). | 1.000 -27.02 | |||
| rat | chromosome:5:153690331:153690416:1 | Same_strand|Intronic_coding|ENSRNOT00000056125|ENSRNOG00000037180 ## ENSRNOG00000037180|protein_coding|| |
novel_5varHIGH_loopOverlap (48 loci)
block4969 [novel_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.65/0.70 | 19/23/0.75 | 2.5 | 0.0 | 4 | 0 | 2 | 0 | 33 | -21 | 3arm_loop | 1 | nd | 0.26 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------CUGCAAG--------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------CCACUGC------------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------UGCAAGC-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ---------------------------------------------------------ACTGCAAGCAGCGGAGCCAC--------------------------------- | 20 | 1 | 1 | |
| ----------------------------------------------------------CTGCAAGCAGCGGAGCCAC--------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------GCCACTGCAAGCAGCGGAGCCAC--------------------------------- | 23 | 1 | - | |
| rat | gcaaagggaaggctctcttgggtgtgtgcttcaggcttttgcattttcatgattGCCACTGCAAGCAGCGGAGCCACtctggcgcgctccctttcgagccgacccgggcc | |||
| ************************************************************************************************************** | ||||
| rat | ((...(((..(((((....(((.(((((((...(((.(((((.......((.((((....)))).)))))))))).....))))))).)))....)))))..)))..)). | 0.460 -46.51 | ||
| rat | chromosome:10:11143437:11143546:-1 | intergenic |
block126542 [novel_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.106 | no | no | 0.59/0.60 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 40 | -19 | 3arm_loop | 1 | nd | 0.23 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------UCCCAGU--------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------CAGUCCU------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| -------------------------------------------------------CTCCCAGTCCTGCCTTTCTC--------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------------------------CCAGTCCTGCCTTTCTCTCCTC---------------------------------------- | 22 | 1 | - | |
| rat | cggggccggggccgccggggcacaccgaggcgctctgaggcggagggctgcgggaCTCCCAGTCCTGCCTTTCTCTCCTCctgagtgtggcggttccccagcgggacggggaacaaccgg | |||
| ************************************************************************************************************************ | ||||
| rat | (((..(((...((((.((((...((((..((((((.((((.((((((..(((((((.....)))))))..))))))))))..))))))..)))).)))).))))..))).......))). | 0.710 -63.50 | ||
| rat | chromosome:11:55843284:55843403:-1 | intergenic ## {SimpF: oe = 0.89 0 CpG} |
block137095 [novel_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.153 | no | no | 0.35/0.50 | 18/22/0.80 | 4.8 | 7.0 | 5 | 0 | 2 | 0 | 18 | -7 | 5arm_loop_3arm | 1 | nd | 0.15 | 2 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------CCCGAAG-------------------------------------------- | 1 | novel | |
| seed | -------------------AAGUACC------------------------------------------------- | 1 | novel | |
| seed | ---------------------GUACCCG----------------------------------------------- | 1 | novel | |
| seed | ----------------------------AAGGAGC---------------------------------------- | 1 | novel | |
| seed | ---------------------------GAAGGAG----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| -----------------------ACCCGAAGGAGCTTTCTTAAA------------------------------- | 21 | - | 1 | |
| --------------------AGTACCCGAAGGAGCTTTCT----------------------------------- | 20 | - | 1 | |
| ---------------------------GAAGGAGCTTTCTTAAACAA---------------------------- | 20 | 1 | - | |
| ------------------AAAGTACCCGAAGGAGCT--------------------------------------- | 18 | 1 | - | |
| --------------------------CGAAGGAGCTTTCTTAAACAAG--------------------------- | 22 | 1 | - | |
| rat | tcaatctacccataaataAAAGTACCCGAAGGAGCTTTCTTAAACAAGaaggttctgagccgagtgtggttgtga | |||
| *************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002464 ENSRNOG00000038370 Ahsg | |||
| rat | ..........(((((......((((.((..(((((((((((....)))))))))))....)).))))..))))). | 0.780 -16.00 | ||
| rat | chromosome:11:80330614:80330688:-1 | Same_strand|Intronic_coding|ENSRNOT00000002464|ENSRNOG00000038370 ## Same_strand|Boundary_non-coding|ENSRNOT00000058421|ENSRNOG00000038370 ## ENSRNOG00000038370|protein_coding|Ahsg|Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Glycoprotein PP63) (59 kDa bone sialic acid-containing protein) (BSP). [Source:UniProtKB/Swiss-Prot;Acc:P24090] |
block360206 [novel_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.821 | no | no | 0.45/0.61 | 18/24/0.83 | 1.5 0.0 | 2.0 3.0 | 4 2 | 0 0 | 2 2 | 0 0 | 24 13 | -5 6 | 3arm_loop 3arm | 7 7 | nd nd | 0.29 0.33 | 2 3 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------CCAAGAA----------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------AGCUGGU---------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------------UGGUAUC------------------------------------- | 2 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S2 | T4S1 | |||
| -----------------------------------------------------CTGGTATCTCCAAGAACGGGC------------------------ | 21 | - | - | 2 | |
| --------------------------------------------------AAGCTGGTATCTCCAAGAAC---------------------------- | 20 | 2 | - | - | |
| -------------------------------------------------------------TCCAAGAACGGGCAGACCCATGAG------------- | 24 | - | 1 | - | |
| -------------------------------------------------------------TCCAAGAACGGGCAGACC------------------- | 18 | - | - | 1 | |
| rat | tcaggctgactgtgctgtcctgattgttgctgctggtgttggtgaatttgAAGCTGGTATCTCCAAGAACGGGCAGACCCATGAGcatgctcttctgg | ||||
| ************************************************************************************************** | |||||
| rat | .((((..((..(((((........((...(((((.((.((((.(((((.......))).)).))))..)).)))))...))..)))))..)).)))). | 0.420 -23.00 | |||
| rat | chromosome:14:67223875:67223972:-1 | intergenic |
block361972 [novel_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.143 | no | no | 0.62/0.65 | 20/24/1.00 | 3.0 | 1.0 | 2 | 0 | 1 | 0 | 16 | -3 | 3arm | 1 | nd | 0.05 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------GCCAGCC---------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------CCUGUGC---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------------------CCCTGTGCTCTCTTCCTGCC---------------- | 20 | 1 | |
| ----------------------------------------------------------AGCCAGCCCTGTGCTCTCTTCCTG------------------ | 24 | 1 | |
| rat | gggaaaggaagcagataaaaggcaagtgaaagaaaggaggaggggcaggctctgacccAGCCAGCCCTGTGCTCTCTTCCTGCCtagcctgggccagtct | ||
| **************************************************************************************************** | |||
| ..........................................................................................................>>>> | ENSRNOT00000004121 ENSRNOG00000003069 Cd38 | ||
| rat | .(((..((...(((.....((((...........(((((((((((((((..(((.......))).))))).))))))))))))))...)))..))..))) | 0.810 -33.10 |
| rat | chromosome:14:72360331:72360430:-1 | intergenic |
block560756 [novel_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.186 | no | no | 0.50/0.54 | 20/24/1.00 | 2.7 | 3.3 | 3 | 0 | 3 | 0 | 14 | -8 | 5arm_loop_3arm | 5 | nd | 0.29 | 3 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------CGUCACC------------------------------------------------------- | 1 | novel | ||
| seed | --------------------UCACCAU----------------------------------------------------- | 1 | novel | ||
| seed | ---------------AGCCGUC---------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T3S2 | |||
| -------------------GTCACCATGATCATCTACCGGGAC------------------------------------- | 24 | - | - | 1 | |
| --------------CAGCCGTCACCATGATCATCT--------------------------------------------- | 21 | - | 1 | - | |
| -----------------CCGTCACCATGATCATCTAC------------------------------------------- | 20 | 1 | - | - | |
| rat | agtgccactgtcccCAGCCGTCACCATGATCATCTACCGGGACttcatcagccttgacgagctgttctctgacatctaca | ||||
| ******************************************************************************** | |||||
| ..............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048912 ENSRNOG00000030299 LOC685718 | ||||
| rat | .(((....((((..(((((((((...((((..(((....)))....))))....))))).))))......))))..))). | 0.980 -17.00 | |||
| rat | chromosome:16:12912175:12912254:1 | Same_strand|Boundary_non-coding|ENSRNOT00000048912|ENSRNOG00000030299 ## ENSRNOG00000030299|protein_coding|LOC685718| |
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