other hairpins
novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (45 loci)
block881482 [novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.554 | no | no | 0.29/0.50 | 19/24/0.83 | 2.2 | 2.5 | 6 | 0 | 2 | 0 | 15 | -19 | 3arm | 1 | nd | 0.33 | 4 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------ACAUAUG------------------------------------- | 3 | novel | |
| seed | -------------------------------------------GUAUGCU------------------------------- | 2 | novel | |
| seed | --------------------------------------CAUAUGU------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------TACATATGTATGCTTTTCTCT------------------------ | 21 | 1 | 1 | |
| ------------------------------------TACATATGTATGCTTTTCTCTG----------------------- | 22 | - | 1 | |
| ------------------------------------------TGTATGCTTTTCTCTGCCCCCAAC--------------- | 24 | - | 1 | |
| -------------------------------------ACATATGTATGCTTTTCTCTG----------------------- | 21 | - | 1 | |
| ------------------------------------------TGTATGCTTTTCTCTGCCC-------------------- | 19 | - | 1 | |
| rat | agtggtttcctatcaaggttccagaagtacaggcccTACATATGTATGCTTTTCTCTGCCCCCAACtcttgcaaccccatt | |||
| ********************************************************************************* | ||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||
| rat | (((((........(((((((.(((.((...((((..(((....))).))))..))))).....))).)))).....))))) | 0.580 -11.02 | ||
| rat | chromosome:1:129019528:129019608:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1413054 [novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.42/0.50 | 22/24/1.00 | 2.3 | 1.7 | 3 | 0 | 1 | 0 | 9 | -19 | 3arm_loop | 2 | nd | 0.42 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------GUGACUG------------------------------ | 2 | miR-134 |
| seed | --------------------------------------CUCACUA----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------TGTGACTGCTCACTATACCTTACA-------------- | 24 | 2 | |
| -------------------------------------GCTCACTATACCTTACAGGACC--------- | 22 | 1 | |
| rat | cttggattcttaaattctttctggctgtgcTGTGACTGCTCACTATACCTTACAGGACCactccaaga | ||
| ******************************************************************** | |||
| rat | ((((((............(((((...(((..((((....))))..)))....)))))....)))))). | 0.660 -13.49 |
| rat | chromosome:3:140484913:140484980:-1 | intergenic |
block1413630 [novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.334 | no | no | 0.42/0.50 | 22/24/1.00 | 2.3 | 1.7 | 3 | 0 | 1 | 0 | 11 | -19 | 3arm_loop | 2 | nd | 0.32 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------GUGACUG-------------------------------- | 2 | miR-134 |
| seed | ---------------------------------------------CUCACUA------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------TGTGACTGCTCACTATACCTTACA---------------- | 24 | 2 | |
| --------------------------------------------GCTCACTATACCTTACAGGACC----------- | 22 | 1 | |
| rat | gtctgaccttggattcttaaattctttctggctgtgcTGTGACTGCTCACTATACCTTACAGGACCactccaagact | ||
| ***************************************************************************** | |||
| rat | ((((.....(((.............(((((...(((..((((....))))..)))....)))))))).....)))). | 0.450 -13.81 |
| rat | chromosome:3:141083780:141083856:-1 | intergenic |
block881748 [novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.112 | no | no | 0.37/0.45 | 19/22/0.86 | 2.1 | 2.7 | 7 | 0 | 1 | 0 | 14 | -4 | 5arm_loop | 1 | nd | 0.32 | 4 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------GGCUAAA------------------------------------------------------------- | 4 | novel |
| seed | ---------------UCUUCUG------------------------------------------------------------------- | 2 | novel |
| seed | ------------------UCUGGCU---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TGGCTAAAGTGAATGTGTGACC----------------------------------------------- | 22 | 3 | |
| --------------GTCTTCTGGCTAAAGTGAATGT----------------------------------------------------- | 22 | 2 | |
| --------------------TGGCTAAAGTGAATGTGTGAC------------------------------------------------ | 21 | 1 | |
| -----------------TTCTGGCTAAAGTGAATGT----------------------------------------------------- | 19 | 1 | |
| rat | ctttgctgaagtcaGTCTTCTGGCTAAAGTGAATGTGTGACCggcaatattcaaatcagcgtttaaggtactcggtaacttcagtgaag | ||
| ***************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | (((..(((((((.((((((...(((....(((((((((.....))).))))))....))).....))).))).....)))))))..))) | 0.430 -22.20 |
| rat | chromosome:1:129029056:129029144:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1469343 [novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.40/0.48 | 20/21/1.00 | 2.5 | 2.0 | 2 | 0 | 1 | 0 | 18 | -3 | 3arm | 1 | nd | 0.43 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------GCCCUCG----------------------------------- | 1 | novel |
| seed | ------------------------------------------------CGGAAAU------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------TGCCCTCGGAAATGAAAAGGA---------------------- | 21 | 1 | |
| -----------------------------------------------TCGGAAATGAAAAGGAGAAG------------------ | 20 | 1 | |
| rat | atttctctgtagattgcctatgcagtttttaggcactggggaTGCCCTCGGAAATGAAAAGGAGAAGtaggttctgctggtgaaa | ||
| ************************************************************************************* | |||
| rat | .((((.(((((((..((((((....((((((....((((((....))))))...))))))......))))))))))).)).)))) | 0.910 -24.00 |
| rat | chromosome:3:76937334:76937418:1 | intergenic |
block1575934 [novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.618 | no | no | 0.35/0.38 | 19/24/0.80 | 4.8 | 4.0 | 5 | 0 | 3 | 0 | 12 | -11 | 5arm_loop | 1 | nd | 0.43 | 5 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------CUUCACC--------------------------------------------------------- | 4 | miR-412 | ||
| seed | -------------AAGAAUC--------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| ------------TAAGAATCTTCACCATGTCCAAA------------------------------------------------ | 23 | 1 | - | - | |
| ------------------TCTTCACCATGTCCAAATTTCTTG----------------------------------------- | 24 | - | 1 | - | |
| ------------------TCTTCACCATGTCCAAATT---------------------------------------------- | 19 | - | 1 | - | |
| ------------------TCTTCACCATGTCCAAATTTCT------------------------------------------- | 22 | - | 1 | - | |
| ------------------TCTTCACCATGTCCAAATTTCTT------------------------------------------ | 23 | - | - | 1 | |
| rat | cttgtgttctggTAAGAATCTTCACCATGTCCAAATTTCTTGctgtagatatggcagaaagttcacagatgtatgtcctcaag | ||||
| *********************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057494 ENSRNOG00000037844 | ||||
| rat | .......((((....(((..(((.(((((((................)))))))..)))..))).)))).............. | 0.660 -14.29 | |||
| rat | chromosome:4:120125708:120125790:-1 | Same_strand|Intronic_coding|ENSRNOT00000057494|ENSRNOG00000037844 ## ENSRNOG00000037844|protein_coding|| |
block1600635 [novel_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.540 | no | no | 0.43/0.50 | 20/23/1.00 | 3.0 | 1.5 | 2 | 0 | 2 | 0 | 6 | -1 | 5arm_loop | 1 | nd | 0.40 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------AGGAAUC---------------------------------------------------------- | 1 | novel | |
| seed | -------------CAGUUCC---------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S1 | |||
| ------------TCAGTTCCCTTTGGAAGGCA---------------------------------------- | 20 | - | 1 | |
| ------TAGGAATCAGTTCCCTTTGGAAG------------------------------------------- | 23 | 1 | - | |
| rat | aaccttTAGGAATCAGTTCCCTTTGGAAGGCAgtgagtggcacacatctggggaaatgtgtatagaaagagt | |||
| ************************************************************************ | ||||
| rat | .((((((......((.((((((.((....((........))...))...)))))).)).......)))).)) | 0.900 -13.72 | ||
| rat | chromosome:4:164245679:164245750:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap (44 loci)
block1944694 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.975 | no | no | 0.37/0.68 | 18/24/0.75 | 4.7 4.5 2.7 2.5 | 3.1 2.8 2.4 3.1 | 12 4 12 8 | 0 0 0 0 | 5 3 5 6 | 0 0 0 0 | 2 20 19 5 | -7 -17 -2 12 | 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 2 2 | nd nd nd nd | 0.05 0.45 0.43 0.44 | 1 6 7 6 | 36 | 10 | -6 | -14 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------CCCGAGA--------------------------------------- | 4 | novel | |||||||||
| seed | --------------------------------------------------UGACAGA----------------------- | 3 | novel | |||||||||
| seed | ----CUCACGU--------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------------CCGAGAG-------------------------------------- | 3 | novel | |||||||||
| seed | ---GCUCACG---------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | --------------------------------------AGAGAAA----------------------------------- | 2 | novel | |||||||||
| seed | -----------------------------------------------------CAGAAUG-------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------UGUGACA------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------AAACUUU------------------------------- | 2 | novel | |||||||||
| seed | ------------GCGUUCU------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------GACCUUG---------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------UCUACGA--------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------CUACGAC-------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------ACAGAAU--------------------- | 1 | novel | |||||||||
| seed | ------CACGUUG------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------GAGAAAC---------------------------------- | 1 | novel | |||||||||
| seed | -----------------------CCUUGGC-------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------UCGCCCG------------------------------------------ | 1 | novel | |||||||||
| seed | ---------------------------GGCUUCG---------------------------------------------- | 1 | novel | |||||||||
| seed | ---------GUUGCGU---------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------UGCGUUC-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --AGCTCACGTTGCGTTCTACGACC------------------------------------------------------- | 23 | - | - | 3 | - | - | - | - | - | - | - | |
| ---------------------------------GCCCGAGAGAAACTTTGTGACA------------------------- | 22 | - | - | 2 | - | - | - | - | - | - | - | |
| -------------------------------------------------GTGACAGAATGCTCCACC------------- | 18 | - | - | - | - | 1 | 1 | - | - | - | - | |
| ---------------------------------GCCCGAGAGAAACTTTGT----------------------------- | 18 | - | - | 1 | - | - | 1 | - | - | - | - | |
| ---GCTCACGTTGCGTTCTACGAC-------------------------------------------------------- | 21 | - | - | - | - | 2 | - | - | - | - | - | |
| -----------------------------------------GAAACTTTGTGACAGAATGC------------------- | 20 | - | - | - | - | - | - | - | - | - | 2 | |
| ----------------------------------CCCGAGAGAAACTTTGTGAC-------------------------- | 20 | - | - | 2 | - | - | - | - | - | - | - | |
| -----------------------------------------------TTGTGACAGAATGCTCCACC------------- | 20 | - | - | - | 2 | - | - | - | - | - | - | |
| -----TCACGTTGCGTTCTACGACC------------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------TTCGCCCGAGAGAAACTT-------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------ACCTTGGCTTCGCCCGAGAGA------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| -------------------------------------GAGAGAAACTTTGTGACAGA----------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------TTGCGTTCTACGACCTTGGC-------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------CCCGAGAGAAACTTTGTGACAGA----------------------- | 23 | - | - | - | - | - | 1 | - | - | - | - | |
| -----------TGCGTTCTACGACCTTGGCT------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------------AGAGAAACTTTGTGACAGA----------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------GAGAGAAACTTTGTGACAG------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------TTCTACGACCTTGGCTTCGCC-------------------------------------------- | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------ACAGAATGCTCCACCGACTTCCC----- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------CGACCTTGGCTTCGCCCGAGAG-------------------------------------- | 22 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------GACAGAATGCTCCACCGACTTCCC----- | 24 | - | - | - | - | 1 | - | - | - | - | - | |
| ---GCTCACGTTGCGTTCTACGACC------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| --------CGTTGCGTTCTACGACCTTG---------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------ACAGAATGCTCCACCGAC---------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------GTGACAGAATGCTCCACCGACTTC------- | 24 | - | - | 1 | - | - | - | - | - | - | - | |
| ----------------TCTACGACCTTGGCTTCGC--------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | - | - | |
| --------------------------TGGCTTCGCCCGAGAGAAAC---------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | gtAGCTCACGTTGCGTTCTACGACCTTGGCTTCGCCCGAGAGAAACTTTGTGACAGAATGCTCCACCGACTTCCCgctgt | |||||||||||
| ******************************************************************************** | ||||||||||||
| rat | .((((....((((((((((((((.(((((......))))).......))))...)))))))......))).....)))). | 0.450 -12.20 | ||||||||||
| rat | chromosome:6:75046189:75046268:-1 | intergenic |
block1067095 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.359 | no | no | 0.45/0.60 | 19/25/0.82 | 0.0 0.0 3.9 0.4 0.3 | 2.0 0.0 3.6 1.0 1.8 | 3 1 9 5 13 | 0 0 0 0 0 | 2 1 4 3 3 | 0 0 0 0 0 | 10 18 28 31 19 | 13 3 -14 -20 1 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.25 0.48 0.59 0.63 0.43 | 2 6 8 8 4 | 33 | 7 | 0 | 12 |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------GGACAUG----------------------------------- | 12 | novel | ||||||
| seed | ----------------------------------GACCCAA--------------------------------------------------------- | 5 | novel | ||||||
| seed | ----------------------------------------------AGACCCA--------------------------------------------- | 4 | novel | ||||||
| seed | ----------------------------------------------------------ACAUGGU--------------------------------- | 3 | novel | ||||||
| seed | -----------GGCAUUC-------------------------------------------------------------------------------- | 3 | novel | ||||||
| seed | -----------------------------UCAAUGA-------------------------------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------CCAACCU------------------------------------------------------ | 1 | novel | ||||||
| seed | ------------------------------------------------ACCCAAC------------------------------------------- | 1 | novel | ||||||
| seed | -------------------GUGGCCA------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | -------------------------------AAUGACC------------------------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------TGGACATGGTGCTTAGCTGACACT------------------- | 24 | 2 | - | - | - | - | 4 | - | |
| -------------------------------------------------------TGGACATGGTGCTTAGCTGAC---------------------- | 21 | - | - | - | - | - | 5 | - | |
| ---------------------------------------------------------GACATGGTGCTTAGCTGACACT------------------- | 22 | - | 2 | - | - | - | 1 | - | |
| ---------------------------------------------GAGACCCAACTGGACATGG---------------------------------- | 19 | - | - | 1 | - | - | - | 1 | |
| ---------------------------------TGACCCAACCTAGAGACCC---------------------------------------------- | 19 | - | - | - | - | 1 | 1 | - | |
| ---------------------------------------------GAGACCCAACTGGACATGGTG-------------------------------- | 21 | - | - | - | - | - | 2 | - | |
| ---------------------------------TGACCCAACCTAGAGACCCA--------------------------------------------- | 20 | - | - | - | - | - | 1 | 1 | |
| ----------TGGCATTCTGTGGCCAGCTTCAA----------------------------------------------------------------- | 23 | - | - | - | 1 | - | 1 | - | |
| ----------------------------TTCAATGACCCAACCTAGAGACCC---------------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| ------------------------------------CCCAACCTAGAGACCCAACTGGAC-------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| ------------------------------CAATGACCCAACCTAGAGACCCAAC------------------------------------------- | 25 | - | - | - | - | 1 | - | - | |
| -----------------------------------------------GACCCAACTGGACATGGTGC------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------TGGACATGGTGCTTAGCTGACAC-------------------- | 23 | - | - | - | - | - | 1 | - | |
| ------------------TGTGGCCAGCTTCAATGACCCAACC------------------------------------------------------- | 25 | - | - | - | - | - | 1 | - | |
| ----------TGGCATTCTGTGGCCAGCTT-------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ---------------------------------TGACCCAACCTAGAGACCCAAC------------------------------------------- | 22 | - | - | - | - | - | 1 | - | |
| ----------------------------TTCAATGACCCAACCTAGAGAC------------------------------------------------ | 22 | - | 1 | - | - | - | - | - | |
| rat | ggagaacaggtggcattctgtggccagcttcaatgacccaacctaGAGACCCAACTGGACATGGTGCTTAGCTGACACTtggaaagctgactgggcca | ||||||||
| ************************************************************************************************** | |||||||||
| rat | ((....(((..(((.(((((((..(((((......(((....((((........))))....)))....))))).)))..)))).)))..)))..)). | 0.990 -27.60 | |||||||
| rat | chromosome:20:13195676:13195773:-1 | intergenic |
block1067096 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.397 | no | no | 0.28/0.57 | 18/25/0.70 | 0.0 0.0 5.5 | 0.0 0.0 3.0 | 9 1 4 | 0 0 0 | 2 1 2 | 0 0 0 | 31 59 25 | 9 -16 -2 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.35 0.20 0.05 | 5 3 1 | 27 | 3 | 0 | 7 |
| reads | miRBase family seed | ||||
| seed | --------------------------------CAUUAUU--------------------------------------------------------------------------------- | 10 | novel | ||
| seed | --------------------------------------------GAUCACC--------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------------------AGGUUGA-------------------------------------------------------------------------- | 3 | novel | ||
| seed | -------------------------------------------------------------------------GGGACAA---------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------CACCUCA------------------------------------------------------------------ | 2 | novel | ||
| seed | --------------------------------------UAGGUUG--------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------GUUGAUC------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------------GGCUCUA------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------------------------------AUGGGAC------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------GGCAUGG----------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------------------TCATTATTAGGTTGATCACCTCA------------------------------------------------------------------ | 23 | - | - | 9 | |
| -------------------------------------TTAGGTTGATCACCTCATGGGA------------------------------------------------------------- | 22 | - | - | 2 | |
| -------------------------------------------TGATCACCTCATGGGATGGCA-------------------------------------------------------- | 21 | - | 1 | 1 | |
| ----------------------------------------------TCACCTCATGGGATGGCATGGCTCT------------------------------------------------- | 25 | - | - | 2 | |
| -------------------------------TCATTATTAGGTTGATCA----------------------------------------------------------------------- | 18 | - | - | 1 | |
| -----------------------------------------------------------TGGCATGGCTCTATGGGACA----------------------------------------- | 20 | - | - | 1 | |
| ------------------------------------------------------------------------TGGGACAATGGTGGGAGAA----------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------------------------TGGCTCTATGGGACAATGGTGGGA-------------------------------- | 24 | 1 | - | - | |
| --------------------------------------TAGGTTGATCACCTCATGGGAT------------------------------------------------------------ | 22 | - | - | 1 | |
| ----------------------------------------GGTTGATCACCTCATGGGATGGC--------------------------------------------------------- | 23 | - | - | 1 | |
| ------------------------------------------------------------------------TGGGACAATGGTGGGAGAACAGG------------------------- | 23 | - | - | 1 | |
| --------------------------------------TAGGTTGATCACCTCATG---------------------------------------------------------------- | 18 | - | - | 1 | |
| -------------------------------------------TGATCACCTCATGGGATGG---------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------TAGGTTGATCACCTCATGG--------------------------------------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------------------------------TATGGGACAATGGTGGGAGA------------------------------ | 20 | - | - | 1 | |
| ----------------------------------------GGTTGATCACCTCATGGGA------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | acagtgaccatgggcacgggtgggaccgttcTCATTATTAGGTTGATCACCTCAtgggatggcatggctctatgggacaatggtgggagaacaggtggcattctgtggccagcttcaatg | ||||
| ************************************************************************************************************************ | |||||
| rat | .((.(((...(((.((((((((..(((((((((.(((((..((((.....(((((((...(((...)))))))))).))))))))))))))).)))..))).))))).)))...))).)) | 0.500 -36.90 | |||
| rat | chromosome:20:13195739:13195858:-1 | intergenic |
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