other hairpins
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap (44 loci)
sblock9458 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.153 | no | no | 0.35/0.50 | 18/23/0.73 | 1.0 3.1 1.0 0.0 0.0 | 1.8 2.7 1.5 0.0 0.0 | 4 9 2 4 4 | 0 0 0 0 0 | 2 2 1 1 3 | 0 0 0 0 0 | 1 11 29 15 7 | 10 -4 -14 -4 5 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.38 0.35 0.42 0.20 0.21 | 6 5 8 3 4 | 30 | 4 | 0 | 1 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------AGGAGGU------------------ | 7 | novel | |||
| seed | -------------------AGACCUU------------------------------------------------- | 5 | novel | |||
| seed | ------------UCUAAGG-------------------------------------------------------- | 5 | novel | |||
| seed | -----------------------------------------AAACGUU--------------------------- | 4 | novel | |||
| seed | --GCAGGCU------------------------------------------------------------------ | 3 | novel | |||
| seed | ------------------------------GGGAUGG-------------------------------------- | 1 | novel | |||
| seed | ---------------AAGGAGA----------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------GAUGGAC------------------------------------ | 1 | novel | |||
| seed | ------GCUUUUU-------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------ACCUUAA----------------------------------------------- | 1 | novel | |||
| seed | -------------CUAAGGA------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -------------------------------------------------TAGGAGGTTCTACATGAGG------- | 19 | - | 1 | 4 | - | |
| -----------TTCTAAGGAGACCTTAACTGGGA----------------------------------------- | 23 | - | - | 4 | 1 | |
| ------------------GAGACCTTAACTGGGATGGACT----------------------------------- | 22 | - | - | 5 | - | |
| ----------------------------------------TAAACGTTTTAGGAGGTTCT--------------- | 20 | - | - | 4 | - | |
| -TGCAGGCTTTTTCTAAGGAG------------------------------------------------------ | 20 | 1 | - | 1 | - | |
| -------------------------------------------------TAGGAGGTTCTACATGAG-------- | 18 | 1 | - | - | - | |
| -------------------------------GGATGGACTTAAACGTTTT------------------------- | 19 | - | - | 1 | - | |
| -------------------------------------------------TAGGAGGTTCTACATGAGGC------ | 20 | 1 | - | - | - | |
| --------------------GACCTTAACTGGGATGGACT----------------------------------- | 20 | - | - | 1 | - | |
| --------------TAAGGAGACCTTAACTGGGA----------------------------------------- | 20 | - | - | 1 | - | |
| -----GGCTTTTTCTAAGGAGACCTT------------------------------------------------- | 21 | - | - | 1 | - | |
| -----------------------------TGGGATGGACTTAAACGT---------------------------- | 18 | - | - | 1 | - | |
| -TGCAGGCTTTTTCTAAGGAGAC---------------------------------------------------- | 22 | - | - | 1 | - | |
| ------------TCTAAGGAGACCTTAACTGGGA----------------------------------------- | 22 | - | - | 1 | - | |
| rat | ctgcaggctttTTCTAAGGAGACCTTAACTGGGATGGACTTAAACGTTTTAGGAGGTTCTACATGAGGcaaacag | |||||
| *************************************************************************** | ||||||
| rat | (((...(((((......(((.(((((..((((((((........))))))))))))))))....)))))...))) | 0.990 -18.70 | ||||
| rat | chromosome:5:114564928:114565002:-1 | intergenic |
novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH (44 loci)
block63923 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.357 | no | no | 0.50/0.53 | 18/21/0.02 | 0.0 | 0.0 | 48 | 0 | 10 | 0 | 1 | 23 | 5arm | 1 | nd | 0.33 | 4 | 94 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --GCAGCAU---------------------------------------------------------------------------- | 94 | miR-103/107 | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -AGCAGCATTGATACTCCG------------------------------------------------------------------ | 18 | 17 | 31 | 1 | 4 | 3 | 8 | 1 | 6 | 9 | 5 | |
| -AGCAGCATTGATACTCCGG----------------------------------------------------------------- | 19 | 2 | - | 1 | - | 1 | 2 | - | - | - | 1 | |
| -AGCAGCATTGATACTCCGGAG--------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| -AGCAGCATTGATACTCCGGA---------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | aAGCAGCATTGATACTCCGgagaaaaattacagtcatcaaggttatccccccaagaagcaactctctttttttattaatatgctt | |||||||||||
| ************************************************************************************* | ||||||||||||
| rat | (((((..(((((((....(((((..........((.....((.....)).....))......))))).....))))))).))))) | 0.570 -10.59 | ||||||||||
| rat | chromosome:10:22050318:22050402:1 | intergenic |
block96551 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.615 | no | no | 0.63/0.67 | 18/20/0.01 | 0.0 | 0.0 | 74 | 0 | 10 | 0 | 2 | 17 | 3arm | 3 | nd | 0.50 | 4 | 96 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------------CUUCUGG------------ | 96 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------GCTTCTGGGGCCCAGGAA-- | 18 | 8 | 4 | 12 | 3 | 25 | 11 | 4 | 9 | 9 | 5 | |
| ----------------------------------------------------------------------GCTTCTGGGGCCCAGGAAA- | 19 | 1 | - | 1 | - | 2 | 1 | - | - | - | - | |
| ----------------------------------------------------------------------GCTTCTGGGGCCCAGGAAAC | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | gtgctcttaaccactgagccatctctccagcccgttgcatggaatcttaattggcaatcactctagagtgGCTTCTGGGGCCCAGGAAac | |||||||||||
| ****************************************************************************************** | ||||||||||||
| rat | ....((((..((...((((((.((((..((...(((((...............)))))..))..))))))))))...))....))))... | 0.690 -20.66 | ||||||||||
| rat | chromosome:10:91360798:91360887:1 | intergenic |
block165644 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.507 | no | no | 0.44/0.52 | 18/21/0.06 | 0.0 | 0.0 | 169 | 0 | 10 | 0 | 0 | 32 | 5arm | 1 | nd | 0.47 | 5 | 253 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -GGCUCAG--------------------------------------------------------------------------------------------- | 253 | miR-24 | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| TGGCTCAGTTCATAGTTCC---------------------------------------------------------------------------------- | 19 | 23 | 31 | 5 | 7 | 16 | 6 | 21 | 28 | 36 | 14 | |
| TGGCTCAGTTCATAGTTC----------------------------------------------------------------------------------- | 18 | 5 | 5 | 2 | 3 | 7 | 4 | 9 | 6 | 9 | 2 | |
| TGGCTCAGTTCATAGTTCCC--------------------------------------------------------------------------------- | 20 | 3 | 1 | - | - | 2 | 1 | 3 | 1 | 2 | - | |
| TGGCTCAGTTCATAGTTCCCC-------------------------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | TGGCTCAGTTCATAGTTCCccgattaggatggtgcgaacatgctgggaatttagtaaatccatgtgtcagtcacttttctcatctctatgaccagactcca | |||||||||||
| ***************************************************************************************************** | ||||||||||||
| rat | .((.((...((((((......(((.((((.(((((..((((....(((.((....)).)))..))))..)).))).)))).))).))))))...))..)). | 0.960 -18.30 | ||||||||||
| rat | chromosome:11:64787258:64787358:1 | intergenic |
block259271 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.326 | no | no | 0.39/0.47 | 18/20/0.00 | 0.0 | 0.0 | 271 | 0 | 10 | 0 | 3 | 9 | 5arm | 1 | nd | 0.50 | 4 | 577 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ----AGCACCA------------------------------------------------------ | 506 | miR-29a/29b/29c | |||||||||
| seed | ---UAGCACC------------------------------------------------------- | 69 | novel | |||||||||
| seed | -----GCACCAA----------------------------------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---TAGCACCAAGACTTTAGT-------------------------------------------- | 18 | 133 | 91 | 39 | 9 | 29 | 13 | 38 | 32 | 47 | 25 | |
| --CTAGCACCAAGACTTTAG--------------------------------------------- | 18 | 25 | 14 | 3 | - | 1 | 3 | 1 | 4 | 10 | 3 | |
| ---TAGCACCAAGACTTTAGTG------------------------------------------- | 19 | 12 | 14 | 2 | - | - | 2 | 2 | 8 | 7 | 2 | |
| --CTAGCACCAAGACTTTAGT-------------------------------------------- | 19 | 3 | 1 | - | - | - | - | - | - | 1 | - | |
| ----AGCACCAAGACTTTAGTGC------------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ---TAGCACCAAGACTTTAGTGC------------------------------------------ | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ----AGCACCAAGACTTTAGTG------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | accTAGCACCAAGACTTTAGTgcggaggtgaaatgaatccgcttccatctggttctcgggggggg | |||||||||||
| ***************************************************************** | ||||||||||||
| --------------------------------------------------------------------------- | ENSRNOT00000011991 ENSRNOG00000008937 Csrp1 | |||||||||||
| rat | .(((....((.(((..((((...(((((((.........)))))))..)))).))).))..))). | 0.940 -19.00 | ||||||||||
| rat | chromosome:13:48751670:48751734:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000011991|ENSRNOG00000008937 ## ENSRNOG00000008937|protein_coding|Csrp1|Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1) (CRP1) (CRP). [Source:UniProtKB/Swiss-Prot;Acc:P47875] |
block316914 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.282 | no | no | 0.58/0.63 | 18/19/0.00 | 0.0 | 0.0 | 56 | 0 | 9 | 0 | 1 | 14 | 5arm | 1 | nd | 0.50 | 4 | 84 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | --GGGACCU------------------------------------------------------------------- | 79 | novel | ||||||||
| seed | ---GGACCUC------------------------------------------------------------------ | 4 | novel | ||||||||
| seed | -GGGGACC-------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -GGGGACCTCAGATCAGAC--------------------------------------------------------- | 18 | 2 | 4 | 6 | 20 | 11 | 1 | 3 | 3 | 25 | |
| -GGGGACCTCAGATCAGACC-------------------------------------------------------- | 19 | - | - | - | 3 | 1 | - | - | - | - | |
| --GGGACCTCAGATCAGACC-------------------------------------------------------- | 18 | 1 | 1 | 1 | - | - | - | - | - | 1 | |
| AGGGGACCTCAGATCAGAC--------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | |
| rat | aGGGGACCTCAGATCAGACctgcatcagagatcaacagtccaggatctctgggatgtaaatgggtggaaatcactc | ||||||||||
| **************************************************************************** | |||||||||||
| rat | .(((((..((...(((....(((((((((((((..........)))))))..))))))..)))...))..)).))) | 0.540 -18.70 | |||||||||
| rat | chromosome:13:74551303:74551378:1 | intergenic |
block375861 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.359 | no | no | 0.26/0.28 | 18/19/0.00 | 0.0 | 0.0 | 38 | 0 | 4 | 0 | 2 | 29 | 3arm | 1 | nd | 0.39 | 4 | 51 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------------------------------UCACUUU------------ | 39 | novel | |||
| seed | ---------------------------------------------------------------------------------------------UUCACUU------------- | 12 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S1 | T5S1 | |||
| ---------------------------------------------------------------------------------------------TTCACTTTTGGTCTAAAA-- | 18 | 1 | 9 | 21 | 8 | |
| --------------------------------------------------------------------------------------------ATTCACTTTTGGTCTAAAA-- | 19 | 1 | 6 | 2 | 3 | |
| rat | cctgatgactgtaaagaacaatatgtttaaaggctaatttgggtctttctaccggctggacaagagcgttggaggcagaaattggctttgggaTTCACTTTTGGTCTAAAAgg | |||||
| ***************************************************************************************************************** | ||||||
| rat | (((...(((((.((((........(((..(((((((((((..((((((..((..(((.......))))).))))))..)))))))))))..)))...)))))))))....))) | 0.630 -26.80 | ||||
| rat | chromosome:14:104978786:104978898:-1 | intergenic |
block384777 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.065 | no | no | 0.28/0.35 | 18/20/0.04 | 0.0 | 0.2 | 184 | 0 | 5 | 0 | 1 | 5 | 3arm | 1 | nd | 0.37 | 4 | 219 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------GGAAUGA------------ | 219 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T2S2 | T4S1 | T4S2 | T5S2 | |||
| --------------------------------------TGGAATGATTTCTTTTAC-- | 18 | - | 1 | 59 | 89 | - | |
| --------------------------------------TGGAATGATTTCTTTTACC- | 19 | 1 | - | 24 | 36 | - | |
| --------------------------------------TGGAATGATTTCTTTTACCC | 20 | - | - | 3 | 5 | 1 | |
| rat | gggagctggggagtacttaacctccaagacagtcttggTGGAATGATTTCTTTTACCc | ||||||
| ********************************************************** | |||||||
| rat | (((....(((((((......((.(((((.....))))).))....)))))))...))) | 0.960 -16.70 | |||||
| rat | chromosome:14:12778428:12778485:1 | intergenic |
block421484 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.106 | no | no | 0.50/0.53 | 18/19/0.00 | 0.0 | 0.0 | 106 | 0 | 10 | 0 | 2 | 19 | 5arm | 1 | nd | 0.50 | 4 | 130 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ---AGCUCAG-------------------------------------------------------------------- | 130 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --AAGCTCAGGAGGAATAGC---------------------------------------------------------- | 18 | 7 | 13 | 19 | 16 | 10 | 15 | 8 | 8 | 10 | 4 | |
| --AAGCTCAGGAGGAATAGCG--------------------------------------------------------- | 19 | 3 | - | - | 5 | 2 | 2 | 2 | 2 | 3 | 1 | |
| rat | gaAAGCTCAGGAGGAATAGCgttccccagtgcacaaggaacaaatcctccactcacagtaagcgcctcatgcttctca | |||||||||||
| ****************************************************************************** | ||||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000012286 ENSRNOG00000009267 NP_001100710.1 | |||||||||||
| rat | ((((((....((((....((.......((((....((((.....)))).))))........)).))))..)))).)). | 0.450 -18.36 | ||||||||||
| rat | chromosome:14:103520522:103520599:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000012286|ENSRNOG00000009267 ## ENSRNOG00000009267|protein_coding|NP_001100710.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 [Source:RefSeq_peptide;Acc:NP_001100710] |
block432616 [novel_lenNOK_cloningHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.061 | no | no | 0.37/0.40 | 18/21/0.06 | 0.0 | 0.4 | 181 | 0 | 3 | 0 | 3 | 1 | 3arm | 1 | nd | 0.37 | 4 | 194 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------AAGGCAU-------------- | 194 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T4S1 | T4S2 | |||
| -----------------------------------TAAGGCATAAAGCCTGTA---- | 18 | 1 | 48 | 60 | |
| -----------------------------------TAAGGCATAAAGCCTGTAT--- | 19 | - | 21 | 52 | |
| -----------------------------------TAAGGCATAAAGCCTGTATG-- | 20 | - | 6 | 5 | |
| -----------------------------------TAAGGCATAAAGCCTGTATGA- | 21 | - | - | 1 | |
| rat | gtcatttttaaggcacactgctatgtatgcatatgTAAGGCATAAAGCCTGTATgac | ||||
| ********************************************************* | |||||
| rat | (((((.....((((....((((...(((......))).))))....))))..))))) | 0.430 -12.90 | |||
| rat | chromosome:15:16172183:16172239:-1 | intergenic |
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